Wall clock time and date at job start Tue Mar 9 2021 12:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86301 * 109.47015 * 2 1 4 4 C 1.50704 * 109.46818 * 240.00115 * 2 1 3 5 5 C 1.38242 * 119.96854 * 120.02010 * 4 2 1 6 6 C 1.38287 * 120.10848 * 179.97438 * 5 4 2 7 7 C 1.38125 * 120.05670 * 359.68389 * 6 5 4 8 8 C 1.38754 * 119.94174 * 0.59426 * 7 6 5 9 9 O 1.35900 * 120.05449 * 179.69868 * 8 7 6 10 10 C 1.42898 * 117.00172 * 359.72484 * 9 8 7 11 11 C 1.53001 * 109.47145 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99985 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00161 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00271 * 180.02562 * 15 13 12 17 17 H 1.09001 * 112.84617 * 23.80039 * 16 15 13 18 18 C 1.53784 * 113.61657 * 154.99545 * 16 15 13 19 19 C 1.53781 * 87.07783 * 89.11457 * 18 16 15 20 20 H 1.09000 * 113.61726 * 270.87987 * 19 18 16 21 21 C 1.53005 * 113.61158 * 140.06544 * 19 18 16 22 22 N 1.46500 * 109.46988 * 174.99857 * 21 19 18 23 23 C 1.36888 * 126.39870 * 269.71639 * 22 21 19 24 24 C 1.34675 * 106.81550 * 179.84199 * 23 22 21 25 25 N 1.34128 * 108.02081 * 0.42100 * 24 23 22 26 26 C 1.30497 * 109.25822 * 359.73427 * 25 24 23 27 27 C 1.53780 * 113.61487 * 252.49468 * 16 15 13 28 28 C 1.38166 * 119.97102 * 299.99990 * 4 2 1 29 29 H 0.96696 * 113.99637 * 300.00084 * 1 2 3 30 30 H 1.08994 * 109.46933 * 120.00375 * 2 1 3 31 31 H 1.48496 * 109.99906 * 300.00267 * 3 2 1 32 32 H 1.48496 * 110.00003 * 61.32259 * 3 2 1 33 33 H 1.07997 * 119.94747 * 359.97438 * 5 4 2 34 34 H 1.08007 * 119.97248 * 179.97438 * 6 5 4 35 35 H 1.07997 * 120.02908 * 180.31390 * 7 6 5 36 36 H 1.09001 * 109.46621 * 59.99888 * 10 9 8 37 37 H 1.09002 * 109.47259 * 300.00149 * 10 9 8 38 38 H 1.09001 * 109.46652 * 60.00333 * 11 10 9 39 39 H 1.08992 * 109.47514 * 300.00423 * 11 10 9 40 40 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 41 41 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 42 42 H 0.97005 * 119.99463 * 359.97438 * 15 13 12 43 43 H 1.08995 * 113.61727 * 203.65966 * 18 16 15 44 44 H 1.08996 * 113.61451 * 334.48761 * 18 16 15 45 45 H 1.08995 * 109.47098 * 294.99909 * 21 19 18 46 46 H 1.08998 * 109.47184 * 55.00048 * 21 19 18 47 47 H 1.07994 * 126.59127 * 359.97438 * 23 22 21 48 48 H 1.07998 * 125.98901 * 180.11258 * 24 23 22 49 49 H 1.08005 * 125.65225 * 180.02562 * 26 25 24 50 50 H 1.09001 * 113.61356 * 25.42688 * 27 16 15 51 51 H 1.08995 * 113.61962 * 156.32865 * 27 16 15 52 52 H 1.07998 * 120.03195 * 0.04658 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7264 -0.0381 -2.1399 6 6 3.1893 -0.6873 -3.2697 7 6 2.8635 -2.0115 -3.4890 8 6 2.0609 -2.6869 -2.5807 9 8 1.7340 -3.9880 -2.7973 10 6 2.2465 -4.5969 -3.9841 11 6 1.7768 -6.0513 -4.0550 12 6 2.3251 -6.7029 -5.3260 13 6 1.8620 -8.1353 -5.3961 14 8 1.1627 -8.5902 -4.5159 15 7 2.2258 -8.9111 -6.4365 16 6 1.7751 -10.3033 -6.5049 17 1 0.8644 -10.4819 -5.9332 18 6 1.7243 -10.8648 -7.9357 19 6 3.1879 -11.2925 -7.7354 20 1 3.9094 -10.5271 -8.0210 21 6 3.5118 -12.6652 -8.3286 22 7 4.9465 -12.9292 -8.1936 23 6 5.9195 -12.6140 -9.1034 24 6 7.0898 -13.0285 -8.5816 25 7 6.8371 -13.5901 -7.3901 26 6 5.5554 -13.5342 -7.1511 27 6 2.8895 -11.3259 -6.2272 28 6 1.5971 -2.0332 -1.4486 29 1 -0.3932 0.4417 0.7650 30 1 1.7923 -0.5139 0.8899 31 1 1.5614 2.4679 -1.2084 32 1 1.5880 2.4585 1.2242 33 1 2.9864 0.9959 -1.9677 34 1 3.8100 -0.1598 -3.9790 35 1 3.2295 -2.5196 -4.3690 36 1 3.3360 -4.5677 -3.9659 37 1 1.8831 -4.0544 -4.8569 38 1 0.6874 -6.0807 -4.0729 39 1 2.1406 -6.5935 -3.1823 40 1 1.9610 -6.1605 -6.1986 41 1 3.4146 -6.6735 -5.3085 42 1 2.7854 -8.5472 -7.1403 43 1 1.0367 -11.7025 -8.0519 44 1 1.5925 -10.0996 -8.7006 45 1 2.9496 -13.4326 -7.7967 46 1 3.2374 -12.6792 -9.3833 47 1 5.7765 -12.1248 -10.0555 48 1 8.0609 -12.9309 -9.0441 49 1 5.0632 -13.9093 -6.2659 50 1 3.6997 -10.9328 -5.6131 51 1 2.5204 -12.2896 -5.8763 52 1 0.9756 -2.5579 -0.7381 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:57 Heat of formation + Delta-G solvation = 10.311801 kcal Electronic energy + Delta-G solvation = -31470.444861 eV Core-core repulsion = 27017.874291 eV Total energy + Delta-G solvation = -4452.570570 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.188 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.93894 -41.39897 -41.18753 -39.64192 -39.09556 -37.49025 -35.37441 -34.93338 -33.79371 -32.59106 -31.26212 -30.38317 -29.15852 -28.05140 -26.82326 -26.71663 -24.44327 -23.67766 -23.36101 -22.24082 -21.82696 -21.79074 -21.48733 -20.29130 -18.96470 -18.61173 -18.50265 -18.06989 -17.48618 -17.29603 -17.07611 -16.93047 -16.53138 -16.27618 -15.87200 -15.71306 -15.64250 -15.28894 -15.04388 -14.90793 -14.68041 -14.60012 -14.54119 -14.22702 -14.19953 -13.92161 -13.68770 -13.51779 -13.42790 -13.28023 -13.22482 -12.78818 -12.69004 -12.43253 -12.32021 -12.23619 -11.97195 -11.72451 -11.67119 -11.61656 -11.35460 -11.01801 -10.89494 -10.58731 -10.47114 -10.09640 -9.89116 -9.43069 -9.24891 -4.92524 0.20946 0.40515 1.17017 1.27547 1.55334 1.60954 1.88686 1.93769 1.95886 2.24407 2.34959 2.64023 3.35548 3.38754 3.48551 3.58467 3.71397 3.74839 3.79034 3.84892 3.86738 3.89631 3.97184 4.08977 4.11152 4.13204 4.16061 4.26284 4.26728 4.33504 4.34271 4.38937 4.50523 4.52557 4.59757 4.62435 4.67551 4.71751 4.75357 4.80223 4.85345 4.97969 4.98114 4.98493 5.01374 5.13001 5.18284 5.27351 5.37031 5.37916 5.46579 5.57886 5.73295 5.85036 6.32474 6.41953 6.48203 6.55264 7.17974 7.20716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.096 4.096 3 Si 0.779 3.221 4 C -0.048 4.048 5 C -0.162 4.162 6 C -0.072 4.072 7 C -0.206 4.206 8 C 0.116 3.884 9 O -0.339 6.339 10 C 0.057 3.943 11 C -0.101 4.101 12 C -0.128 4.128 13 C 0.510 3.490 14 O -0.588 6.588 15 N -0.703 5.703 16 C 0.107 3.893 17 H 0.081 0.919 18 C -0.118 4.118 19 C -0.114 4.114 20 H 0.096 0.904 21 C 0.110 3.890 22 N -0.451 5.451 23 C -0.046 4.046 24 C -0.067 4.067 25 N -0.547 5.547 26 C 0.173 3.827 27 C -0.148 4.148 28 C -0.153 4.153 29 H 0.395 0.605 30 H 0.092 0.908 31 H -0.295 1.295 32 H -0.286 1.286 33 H 0.146 0.854 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.417 0.583 43 H 0.114 0.886 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.114 0.886 47 H 0.203 0.797 48 H 0.172 0.828 49 H 0.219 0.781 50 H 0.053 0.947 51 H 0.100 0.900 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.007 2.912 -7.259 8.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.203 4.203 3 Si 0.683 3.317 4 C -0.049 4.049 5 C -0.180 4.180 6 C -0.090 4.090 7 C -0.225 4.225 8 C 0.070 3.930 9 O -0.253 6.253 10 C -0.017 4.017 11 C -0.140 4.140 12 C -0.167 4.167 13 C 0.299 3.701 14 O -0.468 6.468 15 N -0.355 5.355 16 C 0.001 3.999 17 H 0.099 0.901 18 C -0.156 4.156 19 C -0.133 4.133 20 H 0.114 0.886 21 C -0.012 4.012 22 N -0.133 5.133 23 C -0.180 4.180 24 C -0.214 4.214 25 N -0.266 5.266 26 C -0.110 4.110 27 C -0.187 4.187 28 C -0.172 4.172 29 H 0.245 0.755 30 H 0.109 0.891 31 H -0.223 1.223 32 H -0.213 1.213 33 H 0.164 0.836 34 H 0.179 0.821 35 H 0.173 0.827 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.254 0.746 43 H 0.132 0.868 44 H 0.109 0.891 45 H 0.128 0.872 46 H 0.133 0.867 47 H 0.220 0.780 48 H 0.189 0.811 49 H 0.236 0.764 50 H 0.072 0.928 51 H 0.119 0.881 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.706 2.634 -6.575 7.286 hybrid contribution -1.538 0.032 0.072 1.540 sum 0.168 2.666 -6.503 7.031 Atomic orbital electron populations 1.86553 1.18626 1.80867 1.50984 1.25219 0.84096 1.12725 0.98304 0.93974 0.90148 0.71067 0.76502 1.19294 0.96948 0.92797 0.95827 1.21146 1.00873 1.00685 0.95266 1.21302 0.97496 0.93551 0.96620 1.21607 1.02690 0.96816 1.01361 1.19181 0.95232 0.83617 0.94925 1.86047 1.71696 1.22787 1.44771 1.23000 0.99743 0.93106 0.85854 1.21148 1.01569 0.92966 0.98286 1.21536 1.04534 0.90640 0.99992 1.21180 0.78923 0.89174 0.80858 1.90737 1.39799 1.76204 1.40061 1.45604 1.53323 1.11407 1.25124 1.21861 0.97746 0.81037 0.99238 0.90094 1.23266 0.95376 1.02005 0.95002 1.22906 0.98020 0.96744 0.95589 0.88616 1.22229 0.76181 0.97827 1.04916 1.45754 1.09004 1.43172 1.15373 1.23167 0.88172 1.08055 0.98610 1.22642 0.99654 1.05186 0.93892 1.70243 1.15676 1.22616 1.18102 1.25352 0.88849 1.01394 0.95369 1.23541 0.98441 1.00279 0.96438 1.20320 1.03921 0.95000 0.97939 0.75467 0.89058 1.22275 1.21287 0.83635 0.82068 0.82674 0.89703 0.89912 0.92197 0.92205 0.85310 0.85598 0.74587 0.86812 0.89055 0.87160 0.86743 0.78049 0.81086 0.76428 0.92785 0.88117 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.97 12.74 -148.98 -1.90 -4.87 16 2 C -0.10 -0.20 2.81 71.24 0.20 0.00 16 3 Si 0.78 -1.00 29.79 68.60 2.04 1.05 16 4 C -0.05 -0.26 5.42 -19.88 -0.11 -0.36 16 5 C -0.16 -0.23 8.67 22.28 0.19 -0.04 16 6 C -0.07 0.06 10.04 22.25 0.22 0.29 16 7 C -0.21 -0.16 9.04 22.37 0.20 0.05 16 8 C 0.12 0.76 6.69 22.51 0.15 0.91 16 9 O -0.34 -2.42 10.14 -92.43 -0.94 -3.36 16 10 C 0.06 -0.10 4.74 71.98 0.34 0.24 16 11 C -0.10 -0.04 4.87 30.59 0.15 0.11 16 12 C -0.13 0.85 5.70 29.85 0.17 1.02 16 13 C 0.51 0.31 7.83 87.66 0.69 0.99 16 14 O -0.59 -6.90 15.58 -3.02 -0.05 -6.95 16 15 N -0.70 3.87 5.26 -440.04 -2.32 1.55 16 16 C 0.11 -0.51 4.32 45.52 0.20 -0.31 16 17 H 0.08 0.08 7.47 -2.39 -0.02 0.06 16 18 C -0.12 1.35 7.39 31.12 0.23 1.58 16 19 C -0.11 1.18 3.84 -10.27 -0.04 1.14 16 20 H 0.10 -0.91 8.14 -2.39 -0.02 -0.92 16 21 C 0.11 -1.14 5.99 86.38 0.52 -0.63 16 22 N -0.45 1.32 2.75 -529.05 -1.46 -0.13 16 23 C -0.05 0.06 11.58 83.09 0.96 1.02 16 24 C -0.07 -0.34 11.87 83.52 0.99 0.65 16 25 N -0.55 -5.24 11.25 -200.30 -2.25 -7.50 16 26 C 0.17 0.41 12.56 180.26 2.26 2.68 16 27 C -0.15 0.86 7.43 31.12 0.23 1.09 16 28 C -0.15 -1.31 9.55 22.37 0.21 -1.10 16 29 H 0.39 -1.28 8.74 -74.06 -0.65 -1.93 16 30 H 0.09 -0.11 7.96 -2.39 -0.02 -0.13 16 31 H -0.30 -1.60 7.11 99.48 0.71 -0.90 16 32 H -0.29 -0.75 7.11 99.48 0.71 -0.04 16 33 H 0.15 -0.44 4.87 -2.91 -0.01 -0.46 16 34 H 0.16 -1.19 8.06 -2.91 -0.02 -1.21 16 35 H 0.16 -0.82 6.30 -2.91 -0.02 -0.84 16 36 H 0.08 -0.50 7.65 -2.39 -0.02 -0.51 16 37 H 0.08 -0.46 7.67 -2.39 -0.02 -0.48 16 38 H 0.06 0.30 8.10 -2.39 -0.02 0.28 16 39 H 0.06 0.30 8.10 -2.39 -0.02 0.28 16 40 H 0.13 -1.59 8.14 -2.39 -0.02 -1.60 16 41 H 0.13 -1.47 8.14 -2.39 -0.02 -1.49 16 42 H 0.42 -4.96 8.70 -92.70 -0.81 -5.76 16 43 H 0.11 -1.53 8.10 -2.39 -0.02 -1.54 16 44 H 0.09 -1.18 8.14 -2.39 -0.02 -1.20 16 45 H 0.11 -1.38 7.85 -2.39 -0.02 -1.40 16 46 H 0.11 -1.56 8.14 -2.39 -0.02 -1.58 16 47 H 0.20 -1.69 8.06 -2.91 -0.02 -1.71 16 48 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 49 H 0.22 -0.70 8.06 -2.91 -0.02 -0.73 16 50 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 51 H 0.10 -0.72 7.90 -2.39 -0.02 -0.74 16 52 H 0.12 1.20 8.06 -2.91 -0.02 1.18 16 Total: 0.00 -34.41 430.63 0.44 -33.97 By element: Atomic # 1 Polarization: -22.63 SS G_CDS: -0.48 Total: -23.10 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 7.78 Total: 9.34 kcal Atomic # 7 Polarization: -0.05 SS G_CDS: -6.02 Total: -6.07 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -2.88 Total: -15.18 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: 2.04 Total: 1.05 kcal Total: -34.41 0.44 -33.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.284 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds