Wall clock time and date at job start Tue Mar 9 2021 12:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86308 * 109.46843 * 2 1 4 4 C 1.50697 * 109.47473 * 240.00299 * 2 1 3 5 5 C 1.38239 * 119.95157 * 119.99754 * 4 2 1 6 6 C 1.38168 * 120.05754 * 179.97438 * 5 4 2 7 7 C 1.38710 * 119.94467 * 359.97438 * 6 5 4 8 8 O 1.35900 * 120.05190 * 179.97438 * 7 6 5 9 9 C 1.42895 * 117.00269 * 0.02562 * 8 7 6 10 10 C 1.50704 * 109.47257 * 180.02562 * 9 8 7 11 11 O 1.21286 * 119.99587 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00209 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99971 * 180.02562 * 12 10 9 14 14 H 1.08996 * 112.84637 * 336.19675 * 13 12 10 15 15 C 1.53786 * 113.69036 * 107.46656 * 13 12 10 16 16 C 1.53783 * 87.07879 * 89.12433 * 15 13 12 17 17 H 1.08995 * 113.69233 * 270.87078 * 16 15 13 18 18 C 1.53006 * 113.61172 * 139.97819 * 16 15 13 19 19 N 1.46500 * 109.46998 * 87.50262 * 18 16 15 20 20 C 1.36880 * 126.39557 * 269.71875 * 19 18 16 21 21 C 1.34675 * 106.81686 * 179.84115 * 20 19 18 22 22 N 1.34124 * 108.01967 * 0.41664 * 21 20 19 23 23 C 1.30500 * 109.25726 * 359.73481 * 22 21 20 24 24 C 1.53781 * 87.08349 * 25.43091 * 16 15 13 25 25 C 1.38754 * 119.88516 * 0.25260 * 7 6 5 26 26 N 1.48012 * 120.02120 * 179.72727 * 25 7 6 27 27 O 1.21803 * 119.99383 * 180.02562 * 26 25 7 28 28 O 1.21788 * 120.00162 * 359.97438 * 26 25 7 29 29 C 1.38116 * 119.94590 * 359.51287 * 25 7 6 30 30 H 0.96709 * 114.00010 * 60.00391 * 1 2 3 31 31 H 1.08997 * 109.47001 * 119.99631 * 2 1 3 32 32 H 1.48502 * 109.99686 * 298.67667 * 3 2 1 33 33 H 1.48491 * 110.00269 * 59.99683 * 3 2 1 34 34 H 1.08005 * 119.96748 * 359.97438 * 5 4 2 35 35 H 1.07998 * 120.02405 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47629 * 59.99888 * 9 8 7 37 37 H 1.08999 * 109.46767 * 299.99769 * 9 8 7 38 38 H 0.97000 * 119.99725 * 0.02562 * 12 10 9 39 39 H 1.08996 * 113.60998 * 334.58008 * 15 13 12 40 40 H 1.08996 * 113.60935 * 203.67599 * 15 13 12 41 41 H 1.08993 * 109.46955 * 207.50488 * 18 16 15 42 42 H 1.09000 * 109.47050 * 327.50316 * 18 16 15 43 43 H 1.08003 * 126.59616 * 359.97438 * 20 19 18 44 44 H 1.07997 * 125.98908 * 180.11484 * 21 20 19 45 45 H 1.08001 * 125.65303 * 180.02562 * 23 22 21 46 46 H 1.09007 * 113.61545 * 89.11497 * 24 16 15 47 47 H 1.08996 * 113.61597 * 219.93192 * 24 16 15 48 48 H 1.08000 * 119.96865 * 180.23271 * 29 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.7260 -0.0374 -2.1397 6 6 3.1883 -0.6867 -3.2683 7 6 2.8548 -2.0150 -3.4884 8 8 3.3079 -2.6556 -4.5980 9 6 4.1239 -1.9003 -5.4955 10 6 4.5284 -2.7689 -6.6587 11 8 4.1551 -3.9216 -6.7133 12 7 5.3050 -2.2650 -7.6381 13 6 5.6978 -3.1093 -8.7691 14 1 5.6732 -4.1728 -8.5318 15 6 4.9818 -2.7545 -10.0830 16 6 6.1311 -1.7685 -10.3513 17 1 5.9578 -0.7725 -9.9440 18 6 6.5877 -1.7422 -11.8114 19 7 5.7754 -0.7799 -12.5598 20 6 4.6054 -1.0440 -13.2195 21 6 4.1947 0.1170 -13.7645 22 7 5.0942 1.0622 -13.4540 23 6 6.0438 0.5323 -12.7325 24 6 7.0015 -2.6598 -9.4497 25 6 2.0532 -2.6868 -2.5766 26 7 1.6905 -4.1024 -2.8115 27 8 0.9863 -4.6915 -2.0110 28 8 2.0954 -4.6779 -3.8056 29 6 1.5976 -2.0347 -1.4475 30 1 -0.3934 0.4417 -0.7651 31 1 1.7923 -0.5138 0.8900 32 1 1.5878 2.4585 -1.2243 33 1 1.5613 2.4680 1.2084 34 1 2.9857 0.9967 -1.9676 35 1 3.8095 -0.1606 -3.9781 36 1 5.0155 -1.5544 -4.9725 37 1 3.5617 -1.0414 -5.8622 38 1 5.6039 -1.3432 -7.5941 39 1 4.0163 -2.2702 -9.9371 40 1 4.9395 -3.5797 -10.7938 41 1 7.6360 -1.4475 -11.8590 42 1 6.4691 -2.7343 -12.2471 43 1 4.1064 -1.9994 -13.2878 44 1 3.3006 0.2606 -14.3529 45 1 6.9020 1.0564 -12.3385 46 1 7.5114 -3.4593 -9.9874 47 1 7.6674 -2.0993 -8.7936 48 1 0.9767 -2.5583 -0.7357 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_4549638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:18 Heat of formation + Delta-G solvation = 29.332744 kcal Electronic energy + Delta-G solvation = -35012.668498 eV Core-core repulsion = 30040.981540 eV Total energy + Delta-G solvation = -4971.686957 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.151 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.31130 -42.92706 -41.84244 -41.16883 -39.92665 -39.09195 -37.63791 -37.48119 -35.40434 -33.99393 -33.46700 -32.27370 -30.46155 -30.08852 -28.48776 -27.83635 -26.72249 -26.58462 -24.53251 -23.85758 -22.87506 -22.24463 -22.00983 -21.77440 -20.59535 -20.32066 -19.79427 -19.17134 -18.65943 -18.65562 -18.31645 -18.11852 -17.62007 -17.30407 -16.89252 -16.49098 -16.36277 -16.20480 -15.88933 -15.72574 -15.61530 -15.19057 -14.95961 -14.87478 -14.77099 -14.57729 -14.20167 -14.06020 -13.95368 -13.73305 -13.65193 -13.43983 -13.23777 -12.75601 -12.72114 -12.40686 -12.39386 -12.32988 -12.28994 -12.22382 -11.82964 -11.69784 -11.33681 -11.08021 -10.89543 -10.85428 -10.76596 -10.45469 -10.16652 -9.81786 -9.42940 -4.92825 -1.32811 -0.25978 0.14266 0.33817 1.17421 1.18310 1.25711 1.40317 1.59958 1.95382 2.01025 2.03826 2.25255 2.28420 3.09680 3.22131 3.33289 3.39952 3.43238 3.49416 3.57501 3.70089 3.72624 3.75261 3.79603 3.89458 3.91801 3.99024 4.07015 4.20045 4.27702 4.29181 4.37995 4.53957 4.54520 4.60810 4.62384 4.70535 4.77299 4.81148 4.82555 4.83732 4.99147 5.02232 5.06024 5.15266 5.17699 5.37381 5.53218 5.73917 5.83882 6.35920 6.39701 6.40811 6.43569 7.11732 7.18754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.091 4.091 3 Si 0.790 3.210 4 C -0.147 4.147 5 C -0.004 4.004 6 C -0.189 4.189 7 C 0.193 3.807 8 O -0.292 6.292 9 C 0.025 3.975 10 C 0.510 3.490 11 O -0.564 6.564 12 N -0.692 5.692 13 C 0.110 3.890 14 H 0.080 0.920 15 C -0.149 4.149 16 C -0.113 4.113 17 H 0.102 0.898 18 C 0.108 3.892 19 N -0.451 5.451 20 C -0.048 4.048 21 C -0.067 4.067 22 N -0.546 5.546 23 C 0.177 3.823 24 C -0.115 4.115 25 C -0.104 4.104 26 N 0.034 4.966 27 O -0.203 6.203 28 O -0.173 6.173 29 C -0.003 4.003 30 H 0.389 0.611 31 H 0.128 0.872 32 H -0.262 1.262 33 H -0.309 1.309 34 H 0.189 0.811 35 H 0.206 0.794 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.422 0.578 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.120 0.880 42 H 0.104 0.896 43 H 0.191 0.809 44 H 0.168 0.832 45 H 0.232 0.768 46 H 0.112 0.888 47 H 0.098 0.902 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.910 9.784 0.271 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.198 4.198 3 Si 0.692 3.308 4 C -0.149 4.149 5 C -0.022 4.022 6 C -0.207 4.207 7 C 0.144 3.856 8 O -0.202 6.202 9 C -0.052 4.052 10 C 0.295 3.705 11 O -0.441 6.441 12 N -0.346 5.346 13 C 0.004 3.996 14 H 0.098 0.902 15 C -0.188 4.188 16 C -0.132 4.132 17 H 0.120 0.880 18 C -0.013 4.013 19 N -0.133 5.133 20 C -0.182 4.182 21 C -0.214 4.214 22 N -0.265 5.265 23 C -0.106 4.106 24 C -0.154 4.154 25 C -0.189 4.189 26 N 0.544 4.456 27 O -0.411 6.411 28 O -0.387 6.387 29 C -0.022 4.022 30 H 0.238 0.762 31 H 0.146 0.854 32 H -0.188 1.188 33 H -0.238 1.238 34 H 0.205 0.795 35 H 0.223 0.777 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.260 0.740 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.138 0.862 42 H 0.122 0.878 43 H 0.208 0.792 44 H 0.185 0.815 45 H 0.248 0.752 46 H 0.131 0.869 47 H 0.116 0.884 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.689 10.586 0.649 15.058 hybrid contribution -1.804 -1.637 -0.312 2.456 sum 8.885 8.949 0.337 12.616 Atomic orbital electron populations 1.86635 1.18517 1.80450 1.50326 1.25518 0.83592 1.13066 0.97586 0.94187 0.89239 0.69926 0.77401 1.20380 1.02096 0.92531 0.99861 1.21718 0.89370 1.01284 0.89778 1.21804 1.06175 0.90399 1.02337 1.18965 0.89648 0.92079 0.84958 1.86467 1.63705 1.39718 1.30303 1.23117 0.98274 0.94356 0.89485 1.20515 0.78444 0.87634 0.83866 1.90855 1.54732 1.20242 1.78319 1.45296 1.51506 1.16439 1.21351 1.21872 0.97164 0.95403 0.85147 0.90179 1.23536 0.98020 0.99784 0.97419 1.22941 0.96766 0.99444 0.94028 0.88003 1.22242 0.95829 0.92813 0.90378 1.45741 1.18982 1.09893 1.38705 1.23023 0.90999 1.01743 1.02434 1.22571 1.01786 0.90126 1.06903 1.70242 1.05055 1.34052 1.17147 1.25560 1.01583 0.82155 1.01289 1.23267 0.94903 0.99920 0.97298 1.20864 1.13338 0.81604 1.03139 1.43905 0.98252 1.03987 0.99456 1.94506 1.35833 1.68375 1.42337 1.94673 1.56477 1.69282 1.18279 1.20849 0.94136 0.94782 0.92451 0.76157 0.85445 1.18759 1.23791 0.79458 0.77711 0.83437 0.84242 0.74014 0.92698 0.88546 0.86179 0.87806 0.79217 0.81511 0.75209 0.86929 0.88385 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.89 12.77 -148.98 -1.90 -1.01 16 2 C -0.09 0.61 2.82 71.23 0.20 0.81 16 3 Si 0.79 -8.20 29.78 68.60 2.04 -6.16 16 4 C -0.15 0.93 5.39 -19.85 -0.11 0.82 16 5 C 0.00 0.05 8.66 22.25 0.19 0.24 16 6 C -0.19 2.19 9.04 22.37 0.20 2.39 16 7 C 0.19 -0.04 6.67 22.51 0.15 0.11 16 8 O -0.29 -1.04 7.68 -63.41 -0.49 -1.53 16 9 C 0.02 -0.21 5.22 71.24 0.37 0.16 16 10 C 0.51 -0.28 7.91 87.66 0.69 0.41 16 11 O -0.56 -7.61 16.10 15.99 0.26 -7.35 16 12 N -0.69 5.94 5.27 -440.03 -2.32 3.62 16 13 C 0.11 -0.73 4.32 45.52 0.20 -0.54 16 14 H 0.08 -0.01 7.46 -2.39 -0.02 -0.02 16 15 C -0.15 1.09 7.43 31.12 0.23 1.32 16 16 C -0.11 1.43 3.84 -10.26 -0.04 1.39 16 17 H 0.10 -1.31 8.14 -2.39 -0.02 -1.33 16 18 C 0.11 -1.31 5.99 86.38 0.52 -0.79 16 19 N -0.45 1.98 2.75 -529.05 -1.46 0.53 16 20 C -0.05 0.03 11.58 83.09 0.96 1.00 16 21 C -0.07 -0.33 11.87 83.53 0.99 0.66 16 22 N -0.55 -4.15 11.25 -200.31 -2.25 -6.40 16 23 C 0.18 -0.13 12.56 180.26 2.26 2.13 16 24 C -0.12 1.60 7.39 31.12 0.23 1.83 16 25 C -0.10 -0.67 6.87 36.47 0.25 -0.42 16 26 N 0.03 0.56 4.45 -46.24 -0.21 0.35 16 27 O -0.20 -3.74 18.45 18.88 0.35 -3.39 16 28 O -0.17 -3.67 17.24 25.62 0.44 -3.23 16 29 C 0.00 0.00 9.12 22.25 0.20 0.20 16 30 H 0.39 -3.06 8.70 -74.05 -0.64 -3.70 16 31 H 0.13 -0.94 7.96 -2.39 -0.02 -0.96 16 32 H -0.26 2.37 7.11 99.48 0.71 3.08 16 33 H -0.31 0.06 7.11 99.48 0.71 0.77 16 34 H 0.19 -3.73 4.87 -2.91 -0.01 -3.74 16 35 H 0.21 -4.45 6.30 -2.91 -0.02 -4.47 16 36 H 0.15 -2.63 7.66 -2.39 -0.02 -2.65 16 37 H 0.14 -2.30 7.66 -2.39 -0.02 -2.32 16 38 H 0.42 -7.08 8.70 -92.71 -0.81 -7.89 16 39 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.10 -0.73 7.90 -2.39 -0.02 -0.75 16 41 H 0.12 -1.91 8.14 -2.39 -0.02 -1.93 16 42 H 0.10 -1.35 7.84 -2.39 -0.02 -1.37 16 43 H 0.19 -1.06 8.06 -2.91 -0.02 -1.08 16 44 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 45 H 0.23 -1.97 8.06 -2.91 -0.02 -1.99 16 46 H 0.11 -1.71 8.10 -2.38 -0.02 -1.72 16 47 H 0.10 -1.60 8.14 -2.39 -0.02 -1.62 16 48 H 0.15 0.51 7.61 -2.91 -0.02 0.49 16 Total: 0.00 -47.38 414.15 1.61 -45.77 By element: Atomic # 1 Polarization: -32.56 SS G_CDS: -0.37 Total: -32.93 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 7.51 Total: 11.73 kcal Atomic # 7 Polarization: 4.33 SS G_CDS: -6.23 Total: -1.90 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -1.34 Total: -16.50 kcal Atomic # 14 Polarization: -8.20 SS G_CDS: 2.04 Total: -6.16 kcal Total: -47.38 1.61 -45.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_4549638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.100 kcal (2) G-P(sol) polarization free energy of solvation -47.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds