Wall clock time and date at job start Tue Mar 9 2021 12:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36002 * 116.99695 * 2 1 4 4 C 1.39150 * 120.07135 * 179.97438 * 3 2 1 5 5 O 1.35996 * 120.07700 * 0.02562 * 4 3 2 6 6 C 1.42899 * 117.00323 * 179.72282 * 5 4 3 7 7 C 1.50700 * 109.47143 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27800 * 7 6 5 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 6 11 11 H 1.09001 * 112.85727 * 336.19659 * 10 9 7 12 12 C 1.53787 * 113.61668 * 107.50061 * 10 9 7 13 13 C 1.53786 * 87.08169 * 89.11277 * 12 10 9 14 14 H 1.09000 * 113.61405 * 270.88740 * 13 12 10 15 15 C 1.52990 * 113.61433 * 139.98283 * 13 12 10 16 16 N 1.46500 * 109.47249 * 87.50516 * 15 13 12 17 17 C 1.36882 * 126.39686 * 269.71645 * 16 15 13 18 18 C 1.34672 * 106.82014 * 179.84174 * 17 16 15 19 19 N 1.34127 * 108.01559 * 0.41725 * 18 17 16 20 20 C 1.30498 * 109.25695 * 359.73840 * 19 18 17 21 21 C 1.53784 * 113.61535 * 204.99648 * 10 9 7 22 22 C 1.38562 * 119.85396 * 179.73127 * 4 3 2 23 23 C 1.38250 * 119.99637 * 0.27483 * 22 4 3 24 24 C 1.38247 * 120.14852 * 0.02562 * 23 22 4 25 25 C 1.50694 * 119.92821 * 179.97438 * 24 23 22 26 26 O 1.42905 * 109.47192 * 244.99803 * 25 24 23 27 27 Si 1.86301 * 109.47119 * 4.99728 * 25 24 23 28 28 C 1.38249 * 120.14422 * 359.97438 * 24 23 22 29 29 H 1.09002 * 109.47278 * 59.99837 * 1 2 3 30 30 H 1.09001 * 109.46450 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47320 * 299.99285 * 1 2 3 32 32 H 1.09009 * 109.46798 * 59.99577 * 6 5 4 33 33 H 1.08998 * 109.46844 * 300.00081 * 6 5 4 34 34 H 0.97000 * 119.99894 * 359.71837 * 9 7 6 35 35 H 1.09001 * 113.61644 * 203.66224 * 12 10 9 36 36 H 1.09007 * 113.61035 * 334.56829 * 12 10 9 37 37 H 1.09004 * 109.47241 * 207.50486 * 15 13 12 38 38 H 1.09004 * 109.47544 * 327.50703 * 15 13 12 39 39 H 1.08004 * 126.59415 * 359.97438 * 17 16 15 40 40 H 1.08003 * 125.99032 * 180.11554 * 18 17 16 41 41 H 1.08006 * 125.64755 * 180.02562 * 20 19 18 42 42 H 1.09005 * 113.60893 * 25.43122 * 21 10 9 43 43 H 1.08995 * 113.61535 * 156.33378 * 21 10 9 44 44 H 1.07996 * 120.00583 * 180.25605 * 22 4 3 45 45 H 1.07999 * 119.92172 * 180.02562 * 23 22 4 46 46 H 1.08995 * 109.47777 * 124.99906 * 25 24 23 47 47 H 0.96696 * 114.00185 * 180.02562 * 26 25 24 48 48 H 1.48503 * 109.99806 * 178.68299 * 27 25 24 49 49 H 1.48502 * 109.99918 * 299.99841 * 27 25 24 50 50 H 1.08000 * 119.99571 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4359 1.2865 0.0005 5 8 4.1796 0.1479 0.0005 6 6 5.6003 0.3009 -0.0051 7 6 6.2519 -1.0579 -0.0035 8 8 5.5671 -2.0589 0.0023 9 7 7.5958 -1.1608 -0.0025 10 6 8.2292 -2.4817 0.0051 11 1 7.5835 -3.2586 0.4145 12 6 8.8782 -2.8615 -1.3365 13 6 10.1587 -2.1855 -0.8186 14 1 10.2149 -1.1217 -1.0493 15 6 11.4393 -2.9414 -1.1785 16 7 11.9102 -2.5050 -2.4953 17 6 11.5747 -3.0572 -3.7019 18 6 12.2242 -2.3517 -4.6475 19 7 12.9441 -1.4006 -4.0342 20 6 12.7610 -1.4864 -2.7450 21 6 9.6469 -2.4818 0.6010 22 6 4.0602 2.5234 -0.0051 23 6 3.3027 3.6800 -0.0055 24 6 1.9222 3.6058 0.0003 25 6 1.1014 4.8696 0.0004 26 8 0.3693 4.9620 1.2242 27 14 2.2300 6.3431 -0.1609 28 6 1.2931 2.3748 0.0059 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 5.9098 0.8529 0.8825 33 1 5.9032 0.8485 -0.8975 34 1 8.1435 -0.3602 -0.0068 35 1 8.9807 -3.9367 -1.4831 36 1 8.4344 -2.3565 -2.1946 37 1 12.2056 -2.7342 -0.4315 38 1 11.2349 -4.0118 -1.2022 39 1 10.9142 -3.8961 -3.8647 40 1 12.1777 -2.5249 -5.7126 41 1 13.2143 -0.8481 -2.0010 42 1 9.8236 -1.6703 1.3071 43 1 9.9595 -3.4531 0.9841 44 1 5.1384 2.5842 -0.0089 45 1 3.7906 4.6435 -0.0103 46 1 0.4058 4.8512 -0.8385 47 1 -0.1828 5.7528 1.2934 48 1 1.4304 7.5940 -0.1940 49 1 3.1833 6.3796 0.9771 50 1 0.2145 2.3196 0.0100 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:43 Heat of formation + Delta-G solvation = -6.306174 kcal Electronic energy + Delta-G solvation = -32892.845786 eV Core-core repulsion = 28276.410033 eV Total energy + Delta-G solvation = -4616.435752 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.91838 -41.85970 -41.26510 -39.92513 -39.08470 -38.76043 -37.14009 -35.39934 -33.96224 -32.16411 -31.49151 -30.42152 -29.86068 -28.58988 -28.29097 -26.72123 -26.18266 -24.35398 -23.53189 -22.53568 -22.21945 -21.87481 -21.74397 -20.36061 -19.74795 -18.67638 -18.51909 -18.24334 -18.15978 -17.56899 -17.52683 -16.98269 -16.66530 -16.43315 -16.15269 -16.00570 -15.81380 -15.67405 -15.51353 -15.28529 -14.92550 -14.86503 -14.63673 -14.40096 -14.17651 -14.09016 -14.01874 -13.79158 -13.54498 -13.51568 -13.42918 -12.81120 -12.74771 -12.59720 -12.33288 -12.24187 -12.19045 -11.95403 -11.70855 -11.69648 -11.34047 -11.05996 -10.88580 -10.50356 -10.44970 -10.17209 -9.80180 -9.41696 -8.93809 -4.90236 0.14518 0.25315 1.19251 1.30843 1.39470 1.43817 1.62712 1.96150 1.96162 2.26431 2.29007 2.49704 2.53772 3.36583 3.39517 3.48247 3.49819 3.69183 3.72609 3.79319 3.86943 3.87584 3.92722 4.01936 4.05843 4.09367 4.15823 4.20275 4.24922 4.29118 4.29909 4.32034 4.46789 4.53336 4.60754 4.61887 4.64897 4.70013 4.76580 4.81830 4.83635 4.97468 4.99130 5.01838 5.08749 5.14793 5.37002 5.38374 5.52035 5.56796 5.85295 5.94097 6.36094 6.37001 6.50802 6.58391 7.09557 7.19766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.078 3.922 4 C 0.084 3.916 5 O -0.313 6.313 6 C 0.033 3.967 7 C 0.515 3.485 8 O -0.571 6.571 9 N -0.693 5.693 10 C 0.108 3.892 11 H 0.081 0.919 12 C -0.147 4.147 13 C -0.114 4.114 14 H 0.099 0.901 15 C 0.110 3.890 16 N -0.452 5.452 17 C -0.048 4.048 18 C -0.067 4.067 19 N -0.546 5.546 20 C 0.176 3.824 21 C -0.116 4.116 22 C -0.159 4.159 23 C -0.113 4.113 24 C -0.080 4.080 25 C -0.088 4.088 26 O -0.560 6.560 27 Si 0.772 3.228 28 C -0.152 4.152 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.420 0.580 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.192 0.808 40 H 0.169 0.831 41 H 0.230 0.770 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.176 0.824 45 H 0.155 0.845 46 H 0.093 0.907 47 H 0.395 0.605 48 H -0.289 1.289 49 H -0.291 1.291 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.606 3.609 1.715 4.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.032 3.968 4 C 0.039 3.961 5 O -0.226 6.226 6 C -0.044 4.044 7 C 0.301 3.699 8 O -0.449 6.449 9 N -0.347 5.347 10 C 0.003 3.997 11 H 0.099 0.901 12 C -0.186 4.186 13 C -0.133 4.133 14 H 0.118 0.882 15 C -0.012 4.012 16 N -0.133 5.133 17 C -0.182 4.182 18 C -0.214 4.214 19 N -0.265 5.265 20 C -0.107 4.107 21 C -0.155 4.155 22 C -0.178 4.178 23 C -0.131 4.131 24 C -0.081 4.081 25 C -0.196 4.196 26 O -0.370 6.370 27 Si 0.676 3.324 28 C -0.171 4.171 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.258 0.742 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.124 0.876 39 H 0.209 0.791 40 H 0.186 0.814 41 H 0.246 0.754 42 H 0.113 0.887 43 H 0.133 0.867 44 H 0.193 0.807 45 H 0.172 0.828 46 H 0.111 0.889 47 H 0.245 0.755 48 H -0.216 1.216 49 H -0.218 1.218 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.144 3.185 1.936 4.876 hybrid contribution -1.835 -0.063 0.847 2.022 sum 1.309 3.122 2.782 4.382 Atomic orbital electron populations 1.23296 0.76780 1.05271 1.02105 1.86190 1.23053 1.26460 1.89086 1.18632 0.89886 0.85617 1.02640 1.18555 0.88227 0.86463 1.02848 1.86217 1.18155 1.28948 1.89329 1.22777 0.79448 0.95232 1.06968 1.20541 0.83060 0.90771 0.75504 1.90773 1.64088 1.40130 1.49892 1.45340 1.04973 1.09795 1.74583 1.21903 0.94742 0.85025 0.98042 0.90056 1.23537 0.96261 1.01883 0.96901 1.22935 0.92648 1.00532 0.97163 0.88248 1.22228 0.97248 1.00770 0.80911 1.45738 1.34577 1.25193 1.07827 1.23039 1.06509 1.03918 0.84687 1.22585 1.01243 0.96923 1.00604 1.70242 1.25121 1.24794 1.06309 1.25539 0.96538 0.94062 0.94568 1.23278 0.91503 1.05150 0.95536 1.21344 1.02208 0.89279 1.04934 1.20995 0.92446 0.99105 1.00558 1.19255 0.93831 0.93406 1.01599 1.25078 1.01278 1.04000 0.89227 1.86552 1.63158 1.48786 1.38487 0.94045 0.78800 0.72495 0.87010 1.21031 1.00614 0.90504 1.04922 0.91391 0.86975 0.92099 0.85601 0.85512 0.74174 0.88245 0.92654 0.86256 0.87605 0.79086 0.81401 0.75352 0.88699 0.86689 0.80655 0.82818 0.88903 0.75484 1.21616 1.21818 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.33 -3.96 10.28 -79.71 -0.82 -4.78 16 3 C 0.08 0.73 6.70 22.57 0.15 0.88 16 4 C 0.08 0.59 6.70 22.57 0.15 0.74 16 5 O -0.31 -2.93 9.45 -67.09 -0.63 -3.56 16 6 C 0.03 -0.06 5.22 71.24 0.37 0.31 16 7 C 0.51 1.74 7.91 87.66 0.69 2.44 16 8 O -0.57 -9.01 16.10 16.00 0.26 -8.75 16 9 N -0.69 3.52 5.26 -440.02 -2.32 1.21 16 10 C 0.11 -0.50 4.32 45.52 0.20 -0.31 16 11 H 0.08 0.11 7.46 -2.39 -0.02 0.09 16 12 C -0.15 0.88 7.43 31.12 0.23 1.11 16 13 C -0.11 1.25 3.84 -10.27 -0.04 1.21 16 14 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 15 C 0.11 -1.19 5.99 86.38 0.52 -0.68 16 16 N -0.45 1.50 2.75 -529.07 -1.46 0.05 16 17 C -0.05 0.00 11.58 83.09 0.96 0.96 16 18 C -0.07 -0.38 11.87 83.52 0.99 0.61 16 19 N -0.55 -4.68 11.25 -200.31 -2.25 -6.93 16 20 C 0.18 0.09 12.56 180.26 2.26 2.35 16 21 C -0.12 1.39 7.39 31.12 0.23 1.62 16 22 C -0.16 0.09 9.04 22.35 0.20 0.29 16 23 C -0.11 0.04 8.66 22.27 0.19 0.23 16 24 C -0.08 -0.22 5.38 -19.86 -0.11 -0.32 16 25 C -0.09 0.09 2.79 71.23 0.20 0.29 16 26 O -0.56 -1.09 12.81 -148.98 -1.91 -2.99 16 27 Si 0.77 -2.82 29.84 68.60 2.05 -0.78 16 28 C -0.15 -0.84 8.67 22.35 0.19 -0.65 16 29 H 0.07 -0.02 7.68 -2.39 -0.02 -0.04 16 30 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.06 0.08 7.65 -2.39 -0.02 0.06 16 32 H 0.13 -1.09 7.66 -2.38 -0.02 -1.11 16 33 H 0.13 -1.11 7.66 -2.39 -0.02 -1.13 16 34 H 0.42 -5.26 8.70 -92.71 -0.81 -6.07 16 35 H 0.10 -0.69 7.90 -2.39 -0.02 -0.71 16 36 H 0.05 -0.08 8.14 -2.38 -0.02 -0.10 16 37 H 0.12 -1.75 8.14 -2.39 -0.02 -1.77 16 38 H 0.11 -1.31 7.84 -2.38 -0.02 -1.33 16 39 H 0.19 -0.99 8.06 -2.91 -0.02 -1.01 16 40 H 0.17 0.57 8.06 -2.91 -0.02 0.54 16 41 H 0.23 -1.61 8.06 -2.91 -0.02 -1.64 16 42 H 0.09 -1.31 8.14 -2.38 -0.02 -1.33 16 43 H 0.11 -1.59 8.10 -2.39 -0.02 -1.61 16 44 H 0.18 -1.59 6.30 -2.91 -0.02 -1.61 16 45 H 0.15 -0.83 4.85 -2.91 -0.01 -0.84 16 46 H 0.09 -0.44 7.96 -2.39 -0.02 -0.45 16 47 H 0.39 -2.45 8.74 -74.06 -0.65 -3.09 16 48 H -0.29 -0.25 7.11 99.48 0.71 0.46 16 49 H -0.29 -0.72 7.05 99.48 0.70 -0.01 16 50 H 0.14 0.45 6.30 -2.91 -0.02 0.43 16 Total: 0.00 -38.63 417.47 1.00 -37.63 By element: Atomic # 1 Polarization: -22.93 SS G_CDS: -0.43 Total: -23.36 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 8.51 Total: 12.26 kcal Atomic # 7 Polarization: 0.35 SS G_CDS: -6.02 Total: -5.68 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -3.10 Total: -20.08 kcal Atomic # 14 Polarization: -2.82 SS G_CDS: 2.05 Total: -0.78 kcal Total: -38.63 1.00 -37.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.326 kcal (2) G-P(sol) polarization free energy of solvation -38.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds