Wall clock time and date at job start Tue Mar 9 2021 12:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.46712 * 2 1 4 4 C 1.50701 * 109.47271 * 240.00200 * 2 1 3 5 5 C 1.35447 * 125.56601 * 119.97019 * 4 2 1 6 6 C 1.39827 * 107.86656 * 180.02562 * 5 4 2 7 7 C 1.37874 * 107.08798 * 0.02562 * 6 5 4 8 8 C 1.46676 * 126.23694 * 179.97438 * 7 6 5 9 9 O 1.21698 * 119.99723 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99879 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.84605 * 25.05396 * 11 10 8 13 13 C 1.53782 * 113.61445 * 156.25077 * 11 10 8 14 14 C 1.53784 * 87.07767 * 89.11728 * 13 11 10 15 15 H 1.09003 * 113.61268 * 270.87846 * 14 13 11 16 16 C 1.52999 * 113.61090 * 140.06819 * 14 13 11 17 17 N 1.46500 * 109.46783 * 174.99664 * 16 14 13 18 18 C 1.36889 * 126.39634 * 269.70848 * 17 16 14 19 19 C 1.34671 * 106.81611 * 179.84475 * 18 17 16 20 20 N 1.34130 * 108.02112 * 0.42510 * 19 18 17 21 21 C 1.30503 * 109.25660 * 359.72835 * 20 19 18 22 22 C 1.53785 * 113.61303 * 253.85863 * 11 10 8 23 23 N 1.35536 * 125.56131 * 300.31991 * 4 2 1 24 24 H 0.96702 * 114.00437 * 299.99571 * 1 2 3 25 25 H 1.08994 * 109.47453 * 119.99722 * 2 1 3 26 26 H 1.48508 * 109.99874 * 299.99834 * 3 2 1 27 27 H 1.48496 * 110.00174 * 61.31748 * 3 2 1 28 28 H 1.08005 * 126.06489 * 0.07404 * 5 4 2 29 29 H 1.08010 * 126.46097 * 179.97438 * 6 5 4 30 30 H 0.97005 * 120.00161 * 359.71988 * 10 8 7 31 31 H 1.09004 * 113.61155 * 203.66071 * 13 11 10 32 32 H 1.08997 * 113.61383 * 334.48295 * 13 11 10 33 33 H 1.08997 * 109.47124 * 294.99252 * 16 14 13 34 34 H 1.08999 * 109.47368 * 54.99640 * 16 14 13 35 35 H 1.07998 * 126.59031 * 359.97438 * 18 17 16 36 36 H 1.07995 * 125.99037 * 180.11630 * 19 18 17 37 37 H 1.08002 * 125.65240 * 179.97438 * 21 20 19 38 38 H 1.09003 * 113.61400 * 25.43327 * 22 11 10 39 39 H 1.08998 * 113.61245 * 156.33176 * 22 11 10 40 40 H 0.96993 * 125.67846 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7129 -0.1634 -2.1920 6 6 2.9562 -1.1454 -3.1572 7 6 2.3012 -2.2873 -2.7473 8 6 2.2771 -3.5734 -3.4523 9 8 2.8755 -3.7020 -4.5041 10 7 1.5922 -4.6125 -2.9351 11 6 1.5685 -5.8972 -3.6390 12 1 2.4344 -6.0418 -4.2851 13 6 1.2770 -7.0968 -2.7219 14 6 -0.2141 -6.8522 -3.0076 15 1 -0.6839 -6.1576 -2.3112 16 6 -1.0205 -8.1384 -3.1984 17 7 -2.4401 -7.8075 -3.3450 18 6 -3.3596 -7.7090 -2.3358 19 6 -4.5341 -7.3842 -2.9091 20 7 -4.3392 -7.2962 -4.2333 21 6 -3.0872 -7.5485 -4.5017 22 6 0.2275 -6.1966 -4.3297 23 7 1.6693 -1.9990 -1.5589 24 1 -0.3934 0.4416 0.7651 25 1 1.7923 -0.5137 0.8899 26 1 1.5613 2.4679 -1.2086 27 1 1.5877 2.4586 1.2242 28 1 3.0831 0.8511 -2.2097 29 1 3.5455 -1.0309 -4.0551 30 1 1.1186 -4.5112 -2.0947 31 1 1.6466 -8.0449 -3.1125 32 1 1.5569 -6.9294 -1.6819 33 1 -0.6736 -8.6554 -4.0931 34 1 -0.8856 -8.7840 -2.3305 35 1 -3.1777 -7.8605 -1.2821 36 1 -5.4701 -7.2275 -2.3937 37 1 -2.6424 -7.5503 -5.4858 38 1 -0.3405 -5.3024 -4.5865 39 1 0.3108 -6.8990 -5.1590 40 1 1.1279 -2.6157 -1.0419 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:54 Heat of formation + Delta-G solvation = 74.113810 kcal Electronic energy + Delta-G solvation = -23925.056350 eV Core-core repulsion = 20323.347722 eV Total energy + Delta-G solvation = -3601.708629 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.97860 -42.56094 -41.06579 -39.35355 -37.84246 -35.48423 -34.05614 -32.17677 -31.51924 -30.41231 -28.93799 -26.94144 -26.74619 -24.45435 -23.23854 -22.27609 -21.86222 -21.64555 -21.21158 -20.33933 -19.73618 -18.64949 -18.37918 -17.29070 -16.90255 -16.58614 -16.31505 -16.05504 -15.76393 -15.37426 -15.10618 -15.06128 -14.88819 -14.75728 -14.63222 -14.24426 -14.10148 -13.90389 -13.63591 -13.56073 -13.45723 -12.84128 -12.76934 -12.39674 -12.04928 -11.80346 -11.41000 -11.38160 -10.93137 -10.67833 -10.52742 -10.27810 -10.11363 -9.46960 -9.30070 -4.85465 0.23862 1.13198 1.19006 1.50723 1.64068 1.86747 1.90678 1.97807 2.14482 2.20670 2.21328 3.22251 3.32627 3.43131 3.63670 3.70591 3.76705 3.78158 3.86220 4.05151 4.09489 4.18486 4.21113 4.25497 4.42344 4.48375 4.58263 4.64330 4.72223 4.75905 4.77583 4.90304 4.93281 4.95558 5.06884 5.08338 5.32828 5.45041 5.57320 5.74895 5.81043 6.21448 6.29296 6.38654 6.50349 6.97057 7.14331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.066 4.066 3 Si 0.789 3.211 4 C 0.069 3.931 5 C -0.208 4.208 6 C -0.116 4.116 7 C -0.067 4.067 8 C 0.592 3.408 9 O -0.567 6.567 10 N -0.701 5.701 11 C 0.109 3.891 12 H 0.091 0.909 13 C -0.115 4.115 14 C -0.116 4.116 15 H 0.089 0.911 16 C 0.110 3.890 17 N -0.452 5.452 18 C -0.047 4.047 19 C -0.068 4.068 20 N -0.548 5.548 21 C 0.174 3.826 22 C -0.148 4.148 23 N -0.513 5.513 24 H 0.401 0.599 25 H 0.108 0.892 26 H -0.302 1.302 27 H -0.279 1.279 28 H 0.167 0.833 29 H 0.149 0.851 30 H 0.407 0.593 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.202 0.798 36 H 0.171 0.829 37 H 0.221 0.779 38 H 0.049 0.951 39 H 0.108 0.892 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.453 -2.482 8.784 10.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.174 4.174 3 Si 0.692 3.308 4 C -0.050 4.050 5 C -0.232 4.232 6 C -0.143 4.143 7 C -0.181 4.181 8 C 0.381 3.619 9 O -0.446 6.446 10 N -0.352 5.352 11 C 0.004 3.996 12 H 0.110 0.890 13 C -0.153 4.153 14 C -0.135 4.135 15 H 0.107 0.893 16 C -0.011 4.011 17 N -0.134 5.134 18 C -0.181 4.181 19 C -0.215 4.215 20 N -0.267 5.267 21 C -0.109 4.109 22 C -0.187 4.187 23 N -0.111 5.111 24 H 0.253 0.747 25 H 0.126 0.874 26 H -0.229 1.229 27 H -0.206 1.206 28 H 0.185 0.815 29 H 0.167 0.833 30 H 0.243 0.757 31 H 0.140 0.860 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.219 0.781 36 H 0.189 0.811 37 H 0.237 0.763 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 4.205 -2.089 7.006 8.434 hybrid contribution -1.326 -0.302 1.300 1.881 sum 2.879 -2.391 8.306 9.111 Atomic orbital electron populations 1.86522 1.18166 1.81013 1.51641 1.24762 0.84329 1.12207 0.96137 0.93454 0.90230 0.70448 0.76629 1.20244 1.01697 0.84610 0.98420 1.20902 1.05983 1.01139 0.95146 1.21494 1.00988 0.91297 1.00490 1.20310 1.09211 0.96480 0.92081 1.17180 0.78222 0.82649 0.83879 1.90844 1.46363 1.83485 1.23927 1.45443 1.52445 1.11028 1.26269 1.21956 0.98959 0.82821 0.95888 0.89045 1.23278 0.93075 0.98090 1.00871 1.22964 0.95787 0.96742 0.98040 0.89252 1.22238 0.75084 0.97337 1.06405 1.45762 1.10295 1.50570 1.06724 1.23159 0.89538 1.09355 0.96035 1.22641 0.99731 1.08762 0.90331 1.70243 1.17384 1.21847 1.17202 1.25377 0.88480 1.03860 0.93176 1.23617 0.96190 1.01060 0.97840 1.41844 1.39382 1.11522 1.18307 0.74695 0.87407 1.22926 1.20577 0.81549 0.83332 0.75687 0.85986 0.89137 0.86776 0.86609 0.78081 0.81141 0.76295 0.93241 0.87337 0.73389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.28 12.86 -148.98 -1.92 -0.64 16 2 C -0.07 0.32 3.07 71.24 0.22 0.53 16 3 Si 0.79 -3.87 30.54 68.60 2.10 -1.77 16 4 C 0.07 0.00 6.51 41.34 0.27 0.27 16 5 C -0.21 -0.39 9.32 22.01 0.21 -0.19 16 6 C -0.12 -0.66 10.65 22.57 0.24 -0.42 16 7 C -0.07 -0.30 7.06 40.35 0.28 -0.02 16 8 C 0.59 3.68 7.79 86.45 0.67 4.35 16 9 O -0.57 -8.24 16.50 -4.34 -0.07 -8.32 16 10 N -0.70 1.32 5.26 -443.98 -2.34 -1.01 16 11 C 0.11 -0.40 4.30 45.52 0.20 -0.21 16 12 H 0.09 0.05 7.49 -2.39 -0.02 0.04 16 13 C -0.11 1.28 7.38 31.12 0.23 1.51 16 14 C -0.12 1.09 3.85 -10.18 -0.04 1.05 16 15 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 16 C 0.11 -1.11 5.99 86.38 0.52 -0.59 16 17 N -0.45 0.94 2.75 -529.06 -1.46 -0.51 16 18 C -0.05 0.01 11.58 83.09 0.96 0.98 16 19 C -0.07 -0.42 11.87 83.52 0.99 0.57 16 20 N -0.55 -5.83 11.25 -200.31 -2.25 -8.09 16 21 C 0.17 0.57 12.56 180.26 2.26 2.84 16 22 C -0.15 0.71 7.45 31.21 0.23 0.94 16 23 N -0.51 0.42 5.99 -171.93 -1.03 -0.61 16 24 H 0.40 -4.12 8.74 -74.06 -0.65 -4.76 16 25 H 0.11 -1.10 7.96 -2.39 -0.02 -1.12 16 26 H -0.30 -1.18 7.11 99.48 0.71 -0.47 16 27 H -0.28 0.42 7.11 99.48 0.71 1.13 16 28 H 0.17 -0.39 6.17 -2.91 -0.02 -0.41 16 29 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 30 H 0.41 -3.01 7.83 -92.70 -0.73 -3.74 16 31 H 0.12 -1.73 8.10 -2.38 -0.02 -1.75 16 32 H 0.09 -1.13 8.14 -2.39 -0.02 -1.15 16 33 H 0.11 -1.45 7.85 -2.39 -0.02 -1.47 16 34 H 0.12 -1.55 8.14 -2.39 -0.02 -1.57 16 35 H 0.20 -1.48 8.06 -2.91 -0.02 -1.51 16 36 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 37 H 0.22 -0.56 8.06 -2.91 -0.02 -0.58 16 38 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.11 -0.78 7.91 -2.39 -0.02 -0.80 16 40 H 0.43 -2.74 8.19 -92.71 -0.76 -3.50 16 Total: 0.00 -29.55 343.79 -0.72 -30.27 By element: Atomic # 1 Polarization: -19.95 SS G_CDS: -1.00 Total: -20.95 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 7.25 Total: 11.62 kcal Atomic # 7 Polarization: -3.15 SS G_CDS: -7.08 Total: -10.22 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -1.99 Total: -8.95 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.10 Total: -1.77 kcal Total: -29.55 -0.72 -30.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.388 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds