Wall clock time and date at job start Tue Mar 9 2021 13:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.46944 * 2 1 4 4 C 1.50703 * 109.47136 * 240.00068 * 2 1 3 5 5 C 1.36451 * 120.29252 * 240.02025 * 4 2 1 6 6 C 1.40098 * 119.24910 * 179.69472 * 5 4 2 7 7 C 1.40853 * 132.85881 * 179.65755 * 6 5 4 8 8 C 1.46561 * 126.58236 * 0.66453 * 7 6 5 9 9 O 1.21717 * 120.00207 * 359.71130 * 8 7 6 10 10 N 1.34782 * 119.99929 * 179.71503 * 8 7 6 11 11 C 1.46497 * 119.99971 * 180.02562 * 10 8 7 12 12 H 1.09008 * 112.85053 * 23.80037 * 11 10 8 13 13 C 1.53785 * 113.61695 * 154.99884 * 11 10 8 14 14 C 1.53787 * 87.07938 * 139.97956 * 13 11 10 15 15 H 1.08995 * 113.61179 * 89.20413 * 14 13 11 16 16 C 1.50700 * 113.61219 * 220.01573 * 14 13 11 17 17 N 1.30499 * 125.65228 * 265.04525 * 16 14 13 18 18 C 1.34129 * 109.25449 * 179.97438 * 17 16 14 19 19 C 1.34671 * 108.02244 * 359.73194 * 18 17 16 20 20 N 1.35049 * 125.64575 * 85.00433 * 16 14 13 21 21 C 1.53772 * 87.08165 * 334.56688 * 14 13 11 22 22 C 1.40563 * 106.83662 * 180.40268 * 7 6 5 23 23 N 1.30740 * 108.74406 * 0.24103 * 22 7 6 24 24 N 1.36576 * 120.23212 * 0.53255 * 6 5 4 25 25 C 1.36244 * 120.07861 * 359.48902 * 24 6 5 26 26 C 1.35184 * 120.70754 * 0.24348 * 25 24 6 27 27 H 0.96701 * 114.00101 * 299.99530 * 1 2 3 28 28 H 1.09002 * 109.47545 * 120.00000 * 2 1 3 29 29 H 1.48499 * 110.00113 * 299.99892 * 3 2 1 30 30 H 1.48498 * 110.00018 * 61.31943 * 3 2 1 31 31 H 1.07994 * 120.37527 * 359.97438 * 5 4 2 32 32 H 0.97003 * 119.99863 * 359.97438 * 10 8 7 33 33 H 1.08993 * 113.61340 * 25.43140 * 13 11 10 34 34 H 1.09000 * 113.69158 * 254.54080 * 13 11 10 35 35 H 1.07998 * 125.98600 * 180.02562 * 18 17 16 36 36 H 1.07996 * 126.59545 * 180.28631 * 19 18 17 37 37 H 0.97001 * 126.39625 * 0.03039 * 20 16 14 38 38 H 1.09008 * 113.61454 * 139.98282 * 21 14 13 39 39 H 1.08996 * 113.61683 * 270.88492 * 21 14 13 40 40 H 1.07997 * 125.62469 * 180.21859 * 22 7 6 41 41 H 1.08001 * 119.64727 * 180.27257 * 25 24 6 42 42 H 1.08000 * 119.84250 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7158 -1.8206 -1.1122 6 6 3.1654 -2.4676 -2.2707 7 6 3.9727 -3.6023 -2.4823 8 6 4.5729 -4.4520 -1.4500 9 8 4.3945 -4.1980 -0.2730 10 7 5.3225 -5.5148 -1.8039 11 6 5.9219 -6.3646 -0.7720 12 1 5.3908 -6.3147 0.1786 13 6 6.2058 -7.8002 -1.2445 14 6 7.5226 -7.7159 -0.4546 15 1 7.4307 -8.0369 0.5829 16 6 8.6924 -8.3502 -1.1619 17 7 9.1178 -9.5711 -0.9841 18 6 10.1752 -9.7912 -1.7794 19 6 10.4105 -8.6659 -2.4808 20 7 9.4737 -7.7496 -2.0853 21 6 7.4442 -6.1913 -0.6391 22 6 4.0872 -3.7668 -3.8735 23 7 3.4148 -2.8147 -4.4659 24 7 2.8296 -1.9838 -3.5029 25 6 2.0462 -0.8743 -3.6106 26 6 1.5965 -0.2369 -2.5065 27 1 -0.3933 0.4416 0.7651 28 1 1.7924 -0.5138 0.8900 29 1 1.5614 2.4679 -1.2085 30 1 1.5878 2.4586 1.2242 31 1 2.9834 -2.1988 -0.1367 32 1 5.4644 -5.7175 -2.7418 33 1 6.3476 -7.8853 -2.3218 34 1 5.5065 -8.5374 -0.8501 35 1 10.7363 -10.7114 -1.8488 36 1 11.1899 -8.5147 -3.2129 37 1 9.3851 -6.8400 -2.4104 38 1 7.7441 -5.6285 0.2450 39 1 7.9245 -5.8365 -1.5509 40 1 4.6397 -4.5501 -4.3710 41 1 1.7812 -0.5002 -4.5885 42 1 0.9760 0.6412 -2.6081 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_11618758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:35 Heat of formation + Delta-G solvation = 129.743902 kcal Electronic energy + Delta-G solvation = -27980.454677 eV Core-core repulsion = 23931.054018 eV Total energy + Delta-G solvation = -4049.400659 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.31435 -43.05665 -40.84597 -39.34333 -38.92773 -37.38261 -34.64167 -34.19058 -33.42161 -32.18177 -30.84197 -30.04430 -27.44126 -26.75306 -26.13150 -24.83639 -23.69434 -22.98708 -22.50623 -21.62225 -21.31836 -20.63368 -19.20466 -18.95772 -18.50318 -17.92607 -17.51622 -17.06950 -16.92699 -16.69124 -16.40878 -15.90963 -15.71468 -15.61950 -15.55333 -15.21539 -14.86214 -14.58911 -14.43550 -14.13631 -14.02706 -13.93654 -13.49369 -13.40421 -13.29475 -13.03223 -12.68951 -12.43546 -12.11509 -11.98547 -11.93599 -11.64712 -11.60557 -11.01058 -10.98694 -10.91643 -10.84598 -10.25347 -10.04506 -9.31615 -8.79653 -4.90533 -0.58504 -0.12900 1.00836 1.03348 1.12715 1.21546 1.60786 1.86873 2.05358 2.12921 2.17950 2.33083 2.48601 3.01365 3.16471 3.37124 3.44318 3.50561 3.63339 3.68225 3.70932 3.83362 3.87435 3.95921 4.05002 4.21026 4.28914 4.34350 4.38501 4.54548 4.57685 4.62619 4.64206 4.71341 4.77430 4.84895 4.92813 5.03256 5.11232 5.12613 5.16147 5.25115 5.29207 5.59359 5.64501 5.81965 6.28989 6.52413 6.52743 6.62961 7.17284 7.32206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.087 4.087 3 Si 0.764 3.236 4 C -0.020 4.020 5 C -0.111 4.111 6 C 0.151 3.849 7 C -0.337 4.337 8 C 0.602 3.398 9 O -0.586 6.586 10 N -0.704 5.704 11 C 0.131 3.869 12 H 0.107 0.893 13 C -0.122 4.122 14 C -0.024 4.024 15 H 0.118 0.882 16 C 0.214 3.786 17 N -0.534 5.534 18 C -0.065 4.065 19 C -0.042 4.042 20 N -0.555 5.555 21 C -0.138 4.138 22 C 0.131 3.869 23 N -0.341 5.341 24 N -0.273 5.273 25 C 0.112 3.888 26 C -0.147 4.147 27 H 0.400 0.600 28 H 0.095 0.905 29 H -0.275 1.275 30 H -0.276 1.276 31 H 0.158 0.842 32 H 0.413 0.587 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.176 0.824 36 H 0.210 0.790 37 H 0.432 0.568 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.236 0.764 41 H 0.202 0.798 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 4.939 -2.992 6.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.194 4.194 3 Si 0.665 3.335 4 C -0.026 4.026 5 C -0.130 4.130 6 C 0.030 3.970 7 C -0.352 4.352 8 C 0.392 3.608 9 O -0.468 6.468 10 N -0.354 5.354 11 C 0.025 3.975 12 H 0.125 0.875 13 C -0.161 4.161 14 C -0.045 4.045 15 H 0.136 0.864 16 C -0.051 4.051 17 N -0.254 5.254 18 C -0.211 4.211 19 C -0.177 4.177 20 N -0.160 5.160 21 C -0.177 4.177 22 C -0.050 4.050 23 N -0.161 5.161 24 N -0.037 5.037 25 C -0.014 4.014 26 C -0.168 4.168 27 H 0.252 0.748 28 H 0.113 0.887 29 H -0.201 1.201 30 H -0.202 1.202 31 H 0.176 0.824 32 H 0.250 0.750 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.193 0.807 36 H 0.226 0.774 37 H 0.273 0.727 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.252 0.748 41 H 0.219 0.781 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.242 5.415 -3.425 6.527 hybrid contribution -0.426 0.043 0.220 0.481 sum 0.816 5.459 -3.205 6.382 Atomic orbital electron populations 1.86525 1.17377 1.80942 1.51370 1.24944 0.84868 1.12312 0.97283 0.93532 0.90682 0.70971 0.78318 1.19598 0.94319 0.93522 0.95161 1.20653 0.99849 0.94677 0.97835 1.19554 0.96073 0.94735 0.86642 1.19700 1.16961 1.04262 0.94255 1.16977 0.77083 0.79963 0.86795 1.90757 1.63127 1.72917 1.19997 1.45505 1.51698 1.27659 1.10550 1.22336 0.92750 0.89416 0.92951 0.87507 1.23373 0.95448 0.95981 1.01337 1.20785 0.88972 0.95036 0.99688 0.86361 1.23131 0.97378 0.89680 0.94884 1.70181 1.13708 1.15867 1.25682 1.22740 0.98546 1.00697 0.99161 1.23270 0.98501 0.90353 1.05561 1.43245 1.24828 1.15265 1.32681 1.23532 0.96481 0.93951 1.03784 1.24623 0.93407 0.95683 0.91270 1.77575 1.19685 1.07267 1.11608 1.46278 1.32504 1.19356 1.05574 1.22096 0.91474 0.84615 1.03194 1.21034 1.02729 1.02962 0.90067 0.74823 0.88658 1.20095 1.20163 0.82410 0.74969 0.88358 0.89708 0.80680 0.77372 0.72728 0.89991 0.88367 0.74832 0.78113 0.80739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.61 12.76 -148.98 -1.90 -1.29 16 2 C -0.09 0.25 2.81 71.24 0.20 0.45 16 3 Si 0.76 -3.91 31.97 68.60 2.19 -1.71 16 4 C -0.02 -0.01 4.53 -19.81 -0.09 -0.10 16 5 C -0.11 -0.45 9.35 22.30 0.21 -0.24 16 6 C 0.15 0.92 6.76 39.50 0.27 1.18 16 7 C -0.34 -1.41 6.17 -19.90 -0.12 -1.53 16 8 C 0.60 2.85 7.78 86.41 0.67 3.53 16 9 O -0.59 -6.96 15.30 -4.40 -0.07 -7.03 16 10 N -0.70 2.11 5.35 -444.08 -2.37 -0.26 16 11 C 0.13 -0.37 4.24 45.52 0.19 -0.18 16 12 H 0.11 0.13 7.46 -2.38 -0.02 0.12 16 13 C -0.12 0.53 7.38 31.12 0.23 0.76 16 14 C -0.02 0.05 4.29 -11.01 -0.05 0.00 16 15 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 16 C 0.21 0.52 7.36 138.13 1.02 1.54 16 17 N -0.53 -4.89 11.25 -188.13 -2.12 -7.01 16 18 C -0.06 -0.31 11.87 83.52 0.99 0.68 16 19 C -0.04 0.06 12.04 83.09 1.00 1.06 16 20 N -0.56 1.63 5.94 -186.27 -1.11 0.52 16 21 C -0.14 0.69 7.35 31.12 0.23 0.92 16 22 C 0.13 -0.02 11.44 85.42 0.98 0.95 16 23 N -0.34 -1.58 12.57 -56.61 -0.71 -2.29 16 24 N -0.27 -1.24 3.86 -187.27 -0.72 -1.96 16 25 C 0.11 -0.07 11.17 83.30 0.93 0.86 16 26 C -0.15 0.21 8.67 22.03 0.19 0.40 16 27 H 0.40 -3.59 8.74 -74.06 -0.65 -4.24 16 28 H 0.10 -0.50 7.71 -2.39 -0.02 -0.52 16 29 H -0.28 0.14 7.07 99.48 0.70 0.85 16 30 H -0.28 0.28 7.11 99.48 0.71 0.99 16 31 H 0.16 0.75 7.01 -2.91 -0.02 0.73 16 32 H 0.41 -3.84 7.65 -92.71 -0.71 -4.55 16 33 H 0.10 -0.62 8.07 -2.39 -0.02 -0.64 16 34 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 36 H 0.21 -1.84 8.06 -2.91 -0.02 -1.86 16 37 H 0.43 -4.05 7.53 -92.71 -0.70 -4.75 16 38 H 0.08 -0.29 8.14 -2.38 -0.02 -0.31 16 39 H 0.10 -0.86 6.64 -2.39 -0.02 -0.88 16 40 H 0.24 -2.41 7.46 -2.91 -0.02 -2.43 16 41 H 0.20 -1.36 8.06 -2.91 -0.02 -1.38 16 42 H 0.18 -0.86 7.52 -2.91 -0.02 -0.88 16 Total: 0.00 -29.77 360.77 -0.87 -30.64 By element: Atomic # 1 Polarization: -18.98 SS G_CDS: -0.91 Total: -19.89 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 6.85 Total: 10.28 kcal Atomic # 7 Polarization: -3.97 SS G_CDS: -7.03 Total: -11.00 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -1.97 Total: -8.31 kcal Atomic # 14 Polarization: -3.91 SS G_CDS: 2.19 Total: -1.71 kcal Total: -29.77 -0.87 -30.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_11618758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.381 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds