Wall clock time and date at job start Tue Mar 9 2021 13:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34814 * 125.90329 * 2 1 4 4 C 1.40989 * 107.48651 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.25426 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.47497 * 104.97031 * 5 4 3 7 7 Si 1.86295 * 109.47252 * 344.96544 * 5 4 3 8 8 C 1.34811 * 107.48568 * 359.72833 * 4 3 2 9 9 C 1.50702 * 125.90357 * 180.26089 * 8 4 3 10 10 N 1.36652 * 108.19245 * 0.42932 * 8 4 3 11 11 C 1.39672 * 125.67751 * 179.82978 * 10 8 4 12 12 C 1.40203 * 120.15267 * 89.72135 * 11 10 8 13 13 C 1.47578 * 120.19505 * 359.97438 * 12 11 10 14 14 O 1.21583 * 119.99836 * 0.02562 * 13 12 11 15 15 N 1.34769 * 119.99838 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99936 * 180.02562 * 15 13 12 17 17 H 1.09002 * 112.90595 * 23.74640 * 16 15 13 18 18 C 1.53781 * 113.61665 * 155.00203 * 16 15 13 19 19 C 1.53785 * 87.08106 * 139.97956 * 18 16 15 20 20 H 1.08998 * 113.61092 * 89.20258 * 19 18 16 21 21 C 1.50700 * 113.61325 * 220.01486 * 19 18 16 22 22 N 1.30499 * 125.65228 * 263.51495 * 21 19 18 23 23 C 1.34129 * 109.25449 * 179.97438 * 22 21 19 24 24 C 1.34671 * 108.02244 * 359.73194 * 23 22 21 25 25 N 1.35049 * 125.64575 * 83.47404 * 21 19 18 26 26 C 1.53778 * 87.17270 * 334.61027 * 19 18 16 27 27 C 1.39660 * 119.61271 * 180.27470 * 12 11 10 28 28 C 1.37835 * 119.91284 * 359.46743 * 27 12 11 29 29 C 1.38533 * 120.31177 * 0.55980 * 28 27 12 30 30 C 1.38066 * 120.39115 * 359.69562 * 29 28 27 31 31 H 1.08998 * 109.47442 * 270.02458 * 1 2 3 32 32 H 1.08999 * 109.47381 * 30.02997 * 1 2 3 33 33 H 1.09004 * 109.47256 * 150.02708 * 1 2 3 34 34 H 1.08003 * 126.25111 * 359.96887 * 3 2 1 35 35 H 1.08999 * 109.46830 * 224.96617 * 5 4 3 36 36 H 0.96705 * 113.99835 * 300.00292 * 6 5 4 37 37 H 1.48497 * 109.99927 * 180.02562 * 7 5 4 38 38 H 1.48500 * 110.00292 * 301.32449 * 7 5 4 39 39 H 1.09000 * 109.47119 * 270.20266 * 9 8 4 40 40 H 1.09001 * 109.47203 * 30.20008 * 9 8 4 41 41 H 1.08996 * 109.47366 * 150.19823 * 9 8 4 42 42 H 0.97001 * 120.00645 * 0.02562 * 15 13 12 43 43 H 1.08998 * 113.61494 * 25.42782 * 18 16 15 44 44 H 1.09001 * 113.61012 * 254.52953 * 18 16 15 45 45 H 1.07998 * 125.98600 * 180.02562 * 23 22 21 46 46 H 1.07996 * 126.59545 * 180.28631 * 24 23 22 47 47 H 0.97001 * 126.39625 * 0.03039 * 25 21 19 48 48 H 1.08997 * 113.61461 * 139.93909 * 26 19 18 49 49 H 1.09006 * 113.61353 * 270.84150 * 26 19 18 50 50 H 1.08000 * 120.04273 * 179.74402 * 27 12 11 51 51 H 1.08000 * 119.84232 * 180.27774 * 28 27 12 52 52 H 1.08004 * 119.80068 * 179.72166 * 29 28 27 53 53 H 1.08001 * 119.96300 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2975 1.0920 0.0000 4 6 3.6352 0.6466 0.0006 5 6 4.8647 1.5180 0.0014 6 8 5.4540 1.5094 1.3032 7 14 4.3907 3.2611 -0.4542 8 6 3.6133 -0.7013 0.0070 9 6 4.8195 -1.6048 0.0155 10 7 2.3084 -1.1069 0.0007 11 6 1.8671 -2.4321 0.0010 12 6 1.6436 -3.0996 1.2135 13 6 1.8737 -2.4064 2.4959 14 8 2.2578 -1.2529 2.5029 15 7 1.6581 -3.0521 3.6590 16 6 1.8859 -2.3638 4.9320 17 1 1.8206 -1.2792 4.8455 18 6 1.0662 -2.9393 6.0989 19 6 2.3165 -2.7409 6.9720 20 1 2.3680 -1.7600 7.4443 21 6 2.5626 -3.8699 7.9394 22 7 2.2002 -3.8901 9.1929 23 6 2.5835 -5.0505 9.7455 24 6 3.2019 -5.7796 8.7969 25 7 3.1939 -5.0287 7.6524 26 6 3.1426 -2.8463 5.6792 27 6 1.2080 -4.4265 1.2006 28 6 0.9903 -5.0669 -0.0003 29 6 1.2127 -4.4042 -1.1964 30 6 1.6484 -3.0941 -1.1986 31 1 -0.3634 0.0004 1.0276 32 1 -0.3634 0.8897 -0.5143 33 1 -0.3634 -0.8902 -0.5134 34 1 1.9665 2.1201 -0.0005 35 1 5.5819 1.1350 -0.7246 36 1 4.8708 1.8381 2.0011 37 1 5.5946 4.1304 -0.4576 38 1 3.7478 3.2794 -1.7927 39 1 5.1159 -1.8246 -1.0101 40 1 5.6410 -1.1092 0.5329 41 1 4.5740 -2.5338 0.5299 42 1 1.3520 -3.9725 3.6534 43 1 0.7891 -3.9848 5.9640 44 1 0.2246 -2.3118 6.3925 45 1 2.4203 -5.3499 10.7702 46 1 3.6247 -6.7661 8.9167 47 1 3.5683 -5.2831 6.7945 48 1 3.9749 -2.1439 5.6344 49 1 3.4344 -3.8664 5.4293 50 1 1.0376 -4.9487 2.1305 51 1 0.6492 -6.0915 -0.0089 52 1 1.0438 -4.9154 -2.1327 53 1 1.8192 -2.5840 -2.1351 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_12335856.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:01 Heat of formation + Delta-G solvation = 113.678272 kcal Electronic energy + Delta-G solvation = -37414.728211 eV Core-core repulsion = 32835.217807 eV Total energy + Delta-G solvation = -4579.510404 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.10960 -42.83507 -41.18324 -39.92462 -38.83954 -37.64683 -34.95509 -34.08222 -33.55992 -33.46521 -32.34811 -30.56265 -30.33719 -30.09803 -27.27136 -26.83729 -26.41099 -24.81539 -24.56856 -23.51709 -22.65672 -22.01860 -21.50846 -21.06786 -20.74746 -20.19239 -19.03372 -18.80322 -17.82574 -17.47151 -17.36293 -16.79850 -16.43377 -16.29082 -16.00881 -15.97298 -15.75956 -15.69161 -15.19847 -15.03624 -14.92376 -14.79580 -14.70259 -14.54815 -14.31256 -14.17167 -14.01469 -13.98008 -13.67789 -13.57211 -13.40869 -13.33225 -13.23125 -13.09252 -12.87592 -12.73625 -12.46969 -12.44452 -12.11520 -12.01969 -11.73560 -11.73082 -11.04778 -11.02467 -10.95664 -10.32280 -10.28559 -10.10843 -9.98837 -9.50194 -9.35325 -8.65131 -4.92458 -0.41186 0.03776 1.08297 1.22897 1.45675 1.69500 1.76290 1.90666 1.97360 1.98161 2.04775 2.12505 2.22503 2.60850 3.27333 3.36811 3.56289 3.59087 3.63175 3.70565 3.76859 3.78881 3.94861 3.96442 4.06363 4.17846 4.19667 4.23502 4.24352 4.35009 4.44196 4.46425 4.51898 4.54379 4.56676 4.58413 4.62577 4.64910 4.69665 4.71429 4.77513 4.77866 4.85319 4.94797 4.95936 5.01713 5.03821 5.07387 5.16585 5.19798 5.24468 5.28116 5.46615 5.47500 5.63038 5.78534 6.14784 6.29030 6.44205 6.47690 6.65126 6.83719 7.13507 7.15652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.030 3.970 3 C -0.202 4.202 4 C -0.209 4.209 5 C -0.038 4.038 6 O -0.561 6.561 7 Si 0.783 3.217 8 C 0.051 3.949 9 C -0.075 4.075 10 N -0.391 5.391 11 C 0.144 3.856 12 C -0.143 4.143 13 C 0.546 3.454 14 O -0.537 6.537 15 N -0.703 5.703 16 C 0.133 3.867 17 H 0.105 0.895 18 C -0.119 4.119 19 C -0.023 4.023 20 H 0.117 0.883 21 C 0.213 3.787 22 N -0.533 5.533 23 C -0.064 4.064 24 C -0.042 4.042 25 N -0.556 5.556 26 C -0.139 4.139 27 C -0.075 4.075 28 C -0.108 4.108 29 C -0.078 4.078 30 C -0.125 4.125 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.154 0.846 35 H 0.092 0.908 36 H 0.388 0.612 37 H -0.299 1.299 38 H -0.292 1.292 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.412 0.588 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.177 0.823 46 H 0.210 0.790 47 H 0.431 0.569 48 H 0.076 0.924 49 H 0.096 0.904 50 H 0.163 0.837 51 H 0.168 0.832 52 H 0.161 0.839 53 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 -9.425 -1.775 10.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 C -0.225 4.225 4 C -0.215 4.215 5 C -0.149 4.149 6 O -0.368 6.368 7 Si 0.689 3.311 8 C -0.059 4.059 9 C -0.133 4.133 10 N -0.066 5.066 11 C 0.053 3.947 12 C -0.147 4.147 13 C 0.333 3.667 14 O -0.414 6.414 15 N -0.355 5.355 16 C 0.028 3.972 17 H 0.123 0.877 18 C -0.159 4.159 19 C -0.043 4.043 20 H 0.135 0.865 21 C -0.051 4.051 22 N -0.253 5.253 23 C -0.210 4.210 24 C -0.176 4.176 25 N -0.161 5.161 26 C -0.178 4.178 27 C -0.094 4.094 28 C -0.125 4.125 29 C -0.097 4.097 30 C -0.144 4.144 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.171 0.829 35 H 0.110 0.890 36 H 0.237 0.763 37 H -0.227 1.227 38 H -0.219 1.219 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.250 0.750 43 H 0.117 0.883 44 H 0.105 0.895 45 H 0.194 0.806 46 H 0.227 0.773 47 H 0.272 0.728 48 H 0.095 0.905 49 H 0.115 0.885 50 H 0.180 0.820 51 H 0.186 0.814 52 H 0.179 0.821 53 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.837 -7.877 -2.185 9.031 hybrid contribution 0.845 -1.574 -0.655 1.903 sum -2.992 -9.452 -2.840 10.313 Atomic orbital electron populations 1.20277 0.87204 1.03554 1.02393 1.20524 0.93913 0.85040 1.08421 1.20649 0.91801 0.98033 1.12036 1.19605 0.95019 0.92870 1.14026 1.24445 0.93480 1.09055 0.87883 1.86381 1.44116 1.89072 1.17227 0.93488 0.80517 0.74524 0.82540 1.20209 0.84186 0.94106 1.07431 1.20205 0.93649 0.97207 1.02226 1.41018 1.05225 1.02927 1.57398 1.17825 0.99790 0.83629 0.93414 1.20262 1.06027 0.96298 0.92131 1.18395 0.77691 0.86219 0.84418 1.90912 1.45259 1.17641 1.87621 1.45710 1.68489 1.16929 1.04403 1.22342 0.95660 0.98308 0.80930 0.87669 1.23354 0.96849 1.02938 0.92724 1.20760 0.98302 0.94795 0.90489 0.86467 1.23094 0.99168 0.89912 0.92958 1.70184 1.24561 1.23566 1.06988 1.22749 1.04794 0.92019 1.01482 1.23279 1.07599 1.00679 0.86068 1.43238 1.44882 1.14683 1.13270 1.23546 0.97987 1.03011 0.93251 1.21625 0.95507 0.91406 1.00821 1.21679 0.97786 1.01934 0.91116 1.21665 0.94710 0.92675 1.00643 1.21452 1.00213 0.96245 0.96531 0.91643 0.88812 0.92062 0.82873 0.89006 0.76271 1.22730 1.21857 0.90823 0.90530 0.92666 0.75002 0.88293 0.89521 0.80606 0.77327 0.72831 0.90477 0.88545 0.82006 0.81400 0.82146 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.09 71.23 0.72 0.52 16 2 C 0.03 0.23 6.00 41.02 0.25 0.48 16 3 C -0.20 -1.60 9.27 22.16 0.21 -1.40 16 4 C -0.21 -1.95 5.35 -19.98 -0.11 -2.06 16 5 C -0.04 -0.29 2.50 71.24 0.18 -0.11 16 6 O -0.56 -4.70 12.88 -148.98 -1.92 -6.62 16 7 Si 0.78 3.75 30.81 68.60 2.11 5.87 16 8 C 0.05 0.49 5.98 41.02 0.25 0.73 16 9 C -0.08 -0.51 9.87 71.24 0.70 0.20 16 10 N -0.39 -2.92 1.45 -319.53 -0.46 -3.38 16 11 C 0.14 0.44 4.52 38.49 0.17 0.62 16 12 C -0.14 0.02 5.89 -19.99 -0.12 -0.10 16 13 C 0.55 1.42 7.77 86.71 0.67 2.09 16 14 O -0.54 -5.65 13.28 -3.98 -0.05 -5.70 16 15 N -0.70 3.26 5.31 -442.88 -2.35 0.91 16 16 C 0.13 -0.49 4.24 45.58 0.19 -0.30 16 17 H 0.11 0.10 7.47 -2.39 -0.02 0.09 16 18 C -0.12 0.64 7.38 31.12 0.23 0.87 16 19 C -0.02 0.05 4.28 -11.01 -0.05 0.01 16 20 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 21 C 0.21 0.42 7.36 138.13 1.02 1.44 16 22 N -0.53 -4.61 11.25 -188.13 -2.12 -6.72 16 23 C -0.06 -0.27 11.87 83.52 0.99 0.72 16 24 C -0.04 0.09 12.04 83.09 1.00 1.09 16 25 N -0.56 1.89 5.94 -186.27 -1.11 0.79 16 26 C -0.14 0.68 7.38 31.18 0.23 0.91 16 27 C -0.07 0.58 9.54 22.52 0.21 0.79 16 28 C -0.11 1.03 10.02 22.24 0.22 1.25 16 29 C -0.08 0.55 10.03 22.30 0.22 0.77 16 30 C -0.13 0.13 9.96 22.35 0.22 0.36 16 31 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.06 0.10 7.83 -2.39 -0.02 0.08 16 34 H 0.15 0.54 6.59 -2.91 -0.02 0.52 16 35 H 0.09 0.78 7.96 -2.39 -0.02 0.77 16 36 H 0.39 0.96 8.70 -74.05 -0.64 0.32 16 37 H -0.30 -3.21 7.11 99.48 0.71 -2.51 16 38 H -0.29 -2.88 7.11 99.48 0.71 -2.17 16 39 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.08 0.64 7.87 -2.39 -0.02 0.62 16 41 H 0.05 0.35 7.83 -2.39 -0.02 0.33 16 42 H 0.41 -4.49 6.76 -92.71 -0.63 -5.11 16 43 H 0.10 -0.76 8.07 -2.39 -0.02 -0.78 16 44 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 45 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 46 H 0.21 -1.97 8.06 -2.91 -0.02 -1.99 16 47 H 0.43 -4.22 7.54 -92.71 -0.70 -4.92 16 48 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 49 H 0.10 -0.83 6.64 -2.38 -0.02 -0.85 16 50 H 0.16 -2.34 6.40 -2.91 -0.02 -2.36 16 51 H 0.17 -2.60 8.06 -2.91 -0.02 -2.62 16 52 H 0.16 -1.89 8.06 -2.91 -0.02 -1.92 16 53 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 Total: 0.00 -29.31 435.28 0.56 -28.75 By element: Atomic # 1 Polarization: -21.79 SS G_CDS: -0.96 Total: -22.75 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 7.42 Total: 8.87 kcal Atomic # 7 Polarization: -2.38 SS G_CDS: -6.04 Total: -8.41 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -1.97 Total: -12.32 kcal Atomic # 14 Polarization: 3.75 SS G_CDS: 2.11 Total: 5.87 kcal Total: -29.31 0.56 -28.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_12335856.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.424 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds