Wall clock time and date at job start Tue Mar 9 2021 13:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86298 * 109.47141 * 2 1 4 4 C 1.50704 * 109.47368 * 240.00010 * 2 1 3 5 5 C 1.38896 * 119.67621 * 119.99507 * 4 2 1 6 6 C 1.36471 * 120.61876 * 179.97438 * 5 4 2 7 7 C 1.40068 * 119.82568 * 0.02562 * 6 5 4 8 8 C 1.41601 * 133.38167 * 180.32594 * 7 6 5 9 9 C 1.35855 * 107.72844 * 180.11754 * 8 7 6 10 10 C 1.47058 * 125.42740 * 179.84716 * 9 8 7 11 11 O 1.21647 * 119.99856 * 359.69228 * 10 9 8 12 12 N 1.34781 * 120.00391 * 179.69080 * 10 9 8 13 13 C 1.46493 * 120.00323 * 180.02562 * 12 10 9 14 14 H 1.08997 * 112.84992 * 336.19426 * 13 12 10 15 15 C 1.53775 * 113.69280 * 107.46391 * 13 12 10 16 16 C 1.53777 * 87.08304 * 139.99314 * 15 13 12 17 17 H 1.08998 * 113.69576 * 89.12963 * 16 15 13 18 18 C 1.50702 * 113.61752 * 220.02100 * 16 15 13 19 19 N 1.30496 * 125.65406 * 192.52352 * 18 16 15 20 20 C 1.34130 * 109.26014 * 179.97438 * 19 18 16 21 21 C 1.34674 * 108.01710 * 359.97438 * 20 19 18 22 22 N 1.35054 * 125.64689 * 12.75092 * 18 16 15 23 23 C 1.53781 * 113.61547 * 205.00263 * 13 12 10 24 24 N 1.38148 * 109.14664 * 359.57936 * 9 8 7 25 25 C 1.37484 * 108.79454 * 0.26781 * 24 9 8 26 26 C 1.37714 * 119.67647 * 299.97858 * 4 2 1 27 27 H 0.96699 * 114.00331 * 59.99907 * 1 2 3 28 28 H 1.09004 * 109.47574 * 120.00170 * 2 1 3 29 29 H 1.48501 * 110.00033 * 59.99808 * 3 2 1 30 30 H 1.48497 * 110.00213 * 181.32079 * 3 2 1 31 31 H 1.08001 * 119.69176 * 0.02562 * 5 4 2 32 32 H 1.08004 * 120.09140 * 180.02562 * 6 5 4 33 33 H 1.08003 * 126.13505 * 359.95639 * 8 7 6 34 34 H 0.97005 * 119.99441 * 0.02562 * 12 10 9 35 35 H 1.09000 * 113.61601 * 25.44273 * 15 13 12 36 36 H 1.09005 * 113.62017 * 254.54348 * 15 13 12 37 37 H 1.07997 * 125.98942 * 179.97438 * 20 19 18 38 38 H 1.08002 * 126.58669 * 179.97438 * 21 20 19 39 39 H 0.96997 * 126.39579 * 0.06825 * 22 18 16 40 40 H 1.08996 * 113.61748 * 105.38681 * 23 13 12 41 41 H 1.09001 * 113.61480 * 334.47742 * 23 13 12 42 42 H 0.97003 * 125.60830 * 180.28761 * 24 9 8 43 43 H 1.08000 * 120.09018 * 0.03780 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7294 -0.0289 -2.1403 6 6 3.1953 -0.6536 -3.2607 7 6 2.8669 -1.9943 -3.4983 8 6 3.1870 -2.9052 -4.5341 9 6 2.5845 -4.0882 -4.2455 10 6 2.6581 -5.3052 -5.0676 11 8 3.2948 -5.3014 -6.1041 12 7 2.0202 -6.4249 -4.6728 13 6 2.0940 -7.6375 -5.4915 14 1 2.3134 -7.4285 -6.5385 15 6 2.9781 -8.7398 -4.8849 16 6 1.9171 -9.7448 -5.3632 17 1 2.0870 -10.1130 -6.3749 18 6 1.6446 -10.8506 -4.3762 19 7 0.9741 -11.9426 -4.6233 20 6 0.9323 -12.6964 -3.5146 21 6 1.6029 -12.0472 -2.5438 22 7 2.0504 -10.8737 -3.0883 23 6 0.9039 -8.5903 -5.2899 24 7 1.8966 -3.9674 -3.0535 25 6 2.0571 -2.6877 -2.5772 26 6 1.5950 -2.0290 -1.4416 27 1 -0.3934 0.4417 -0.7650 28 1 1.7924 -0.5139 0.8900 29 1 1.5614 2.4679 1.2085 30 1 3.5345 1.7703 -0.0322 31 1 2.9843 1.0048 -1.9591 32 1 3.8156 -0.1156 -3.9623 33 1 3.7981 -2.6962 -5.3997 34 1 1.5122 -6.4278 -3.8464 35 1 3.0664 -8.6811 -3.8001 36 1 3.9411 -8.8510 -5.3835 37 1 0.4461 -13.6559 -3.4176 38 1 1.7542 -12.3852 -1.5293 39 1 2.5644 -10.1877 -2.6344 40 1 0.1922 -8.5809 -6.1154 41 1 0.4251 -8.4909 -4.3158 42 1 1.3847 -4.6700 -2.6231 43 1 0.9736 -2.5502 -0.7284 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_13158378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:46 Heat of formation + Delta-G solvation = 83.755609 kcal Electronic energy + Delta-G solvation = -27514.812737 eV Core-core repulsion = 23528.843787 eV Total energy + Delta-G solvation = -3985.968950 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.13825 -42.71638 -41.02929 -39.46701 -38.82708 -36.88371 -34.91819 -33.49028 -33.27683 -31.30416 -30.50260 -30.40286 -27.38786 -26.86817 -25.94157 -24.29849 -23.20915 -22.63317 -22.04051 -21.66758 -21.40703 -20.78806 -19.46654 -19.09200 -18.40425 -17.83353 -17.14412 -16.88527 -16.60850 -16.40669 -16.12135 -15.83481 -15.73644 -15.52261 -15.20822 -14.93115 -14.89799 -14.74200 -14.63897 -14.49956 -14.14781 -14.05561 -13.61489 -13.54476 -13.14842 -12.59945 -12.58379 -12.51112 -12.09032 -12.02909 -11.78229 -11.64487 -11.40011 -11.06313 -11.05034 -10.97520 -10.43651 -10.31381 -9.38264 -9.33973 -8.84271 -4.94405 -0.39102 0.51710 0.92026 1.05865 1.34542 1.67747 1.71712 1.90466 2.01829 2.08970 2.14716 2.18738 2.76556 3.23100 3.32631 3.48211 3.54008 3.59373 3.69244 3.72281 3.73641 3.93138 4.03564 4.21648 4.24333 4.28870 4.42163 4.47744 4.49516 4.51111 4.55012 4.58444 4.64099 4.74279 4.80180 4.87902 4.93264 4.97510 5.00302 5.12351 5.26862 5.38706 5.40361 5.52859 5.56926 5.75955 5.96955 6.21703 6.40506 6.45181 6.79138 6.90760 7.10875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.070 4.070 3 Si 0.776 3.224 4 C -0.089 4.089 5 C -0.148 4.148 6 C -0.058 4.058 7 C -0.135 4.135 8 C -0.117 4.117 9 C 0.010 3.990 10 C 0.588 3.412 11 O -0.556 6.556 12 N -0.701 5.701 13 C 0.126 3.874 14 H 0.114 0.886 15 C -0.140 4.140 16 C -0.023 4.023 17 H 0.121 0.879 18 C 0.212 3.788 19 N -0.532 5.532 20 C -0.063 4.063 21 C -0.043 4.043 22 N -0.556 5.556 23 C -0.121 4.121 24 N -0.564 5.564 25 C 0.108 3.892 26 C -0.110 4.110 27 H 0.396 0.604 28 H 0.109 0.891 29 H -0.303 1.303 30 H -0.286 1.286 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.411 0.589 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.177 0.823 38 H 0.209 0.791 39 H 0.431 0.569 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.431 0.569 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.988 2.015 3.657 4.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.180 4.180 3 Si 0.683 3.317 4 C -0.091 4.091 5 C -0.167 4.167 6 C -0.076 4.076 7 C -0.140 4.140 8 C -0.144 4.144 9 C -0.100 4.100 10 C 0.376 3.624 11 O -0.434 6.434 12 N -0.352 5.352 13 C 0.022 3.978 14 H 0.132 0.868 15 C -0.179 4.179 16 C -0.044 4.044 17 H 0.139 0.861 18 C -0.053 4.053 19 N -0.252 5.252 20 C -0.210 4.210 21 C -0.177 4.177 22 N -0.161 5.161 23 C -0.160 4.160 24 N -0.170 5.170 25 C -0.003 4.003 26 C -0.131 4.131 27 H 0.246 0.754 28 H 0.127 0.873 29 H -0.231 1.231 30 H -0.213 1.213 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.173 0.827 34 H 0.248 0.752 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.194 0.806 38 H 0.226 0.774 39 H 0.272 0.728 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.272 0.728 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.438 1.839 3.138 3.664 hybrid contribution 0.212 -0.861 1.720 1.936 sum -0.227 0.978 4.858 4.961 Atomic orbital electron populations 1.86461 1.17120 1.82143 1.50588 1.25144 0.85313 1.10649 0.96936 0.93563 0.77961 0.75541 0.84667 1.20156 0.98174 0.93853 0.96894 1.20693 1.00454 1.00527 0.94979 1.20643 0.97879 0.91873 0.97244 1.18446 1.03298 0.95628 0.96582 1.21118 1.02079 0.91117 1.00112 1.19981 1.03637 0.96251 0.90124 1.17294 0.78892 0.82169 0.84089 1.90869 1.43157 1.84275 1.25098 1.45711 1.52286 1.10517 1.26674 1.22487 0.97033 0.81631 0.96700 0.86837 1.23543 0.98630 0.93549 1.02182 1.20779 0.98086 0.88417 0.97088 0.86080 1.23130 0.99745 0.97098 0.85292 1.70181 1.20657 1.04620 1.29734 1.22752 1.06075 1.02375 0.89815 1.23277 1.04121 0.88289 1.02006 1.43240 1.43381 1.18661 1.10821 1.23376 0.96418 0.91873 1.04378 1.41769 1.45012 1.11109 1.19123 1.18431 1.00162 0.85112 0.96599 1.19976 1.02800 0.94406 0.95896 0.75411 0.87328 1.23104 1.21251 0.83672 0.83473 0.82662 0.75186 0.88450 0.89736 0.80610 0.77404 0.72830 0.89263 0.88397 0.72842 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.09 12.76 -148.98 -1.90 -0.81 16 2 C -0.07 0.18 2.81 71.24 0.20 0.38 16 3 Si 0.78 -2.74 29.75 68.60 2.04 -0.70 16 4 C -0.09 0.15 5.40 -19.83 -0.11 0.04 16 5 C -0.15 0.36 8.59 22.01 0.19 0.55 16 6 C -0.06 0.05 10.06 22.30 0.22 0.27 16 7 C -0.14 -0.29 6.16 -21.36 -0.13 -0.42 16 8 C -0.12 -0.38 10.53 22.55 0.24 -0.14 16 9 C 0.01 0.01 6.96 39.91 0.28 0.29 16 10 C 0.59 1.18 7.80 86.56 0.68 1.85 16 11 O -0.56 -5.68 16.44 -4.18 -0.07 -5.75 16 12 N -0.70 3.84 5.35 -443.67 -2.38 1.46 16 13 C 0.13 -0.62 4.24 45.52 0.19 -0.43 16 14 H 0.11 -0.14 7.46 -2.39 -0.02 -0.15 16 15 C -0.14 0.91 7.36 31.12 0.23 1.14 16 16 C -0.02 0.08 4.29 -11.01 -0.05 0.03 16 17 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 18 C 0.21 0.30 7.36 138.13 1.02 1.31 16 19 N -0.53 -4.35 11.25 -188.12 -2.12 -6.46 16 20 C -0.06 -0.26 11.87 83.52 0.99 0.73 16 21 C -0.04 0.09 12.04 83.09 1.00 1.09 16 22 N -0.56 2.11 5.94 -186.26 -1.11 1.00 16 23 C -0.12 0.75 7.38 31.12 0.23 0.98 16 24 N -0.56 2.03 6.07 -177.20 -1.08 0.95 16 25 C 0.11 0.02 7.25 39.13 0.28 0.31 16 26 C -0.11 0.11 9.61 22.37 0.22 0.33 16 27 H 0.40 -3.81 8.70 -74.06 -0.64 -4.45 16 28 H 0.11 -0.18 7.96 -2.39 -0.02 -0.20 16 29 H -0.30 -1.31 7.11 99.48 0.71 -0.61 16 30 H -0.29 -0.35 7.11 99.48 0.71 0.36 16 31 H 0.15 -0.94 4.82 -2.91 -0.01 -0.95 16 32 H 0.15 -0.69 8.06 -2.91 -0.02 -0.71 16 33 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 34 H 0.41 -4.75 7.78 -92.70 -0.72 -5.48 16 35 H 0.10 -0.98 6.64 -2.39 -0.02 -1.00 16 36 H 0.08 -0.41 8.14 -2.38 -0.02 -0.43 16 37 H 0.18 0.18 8.06 -2.91 -0.02 0.15 16 38 H 0.21 -1.95 8.06 -2.91 -0.02 -1.97 16 39 H 0.43 -4.40 7.53 -92.71 -0.70 -5.10 16 40 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.10 -0.79 8.07 -2.39 -0.02 -0.81 16 42 H 0.43 -4.50 8.12 -92.71 -0.75 -5.25 16 43 H 0.13 -0.41 8.06 -2.91 -0.02 -0.43 16 Total: 0.00 -26.81 363.29 -2.59 -29.40 By element: Atomic # 1 Polarization: -25.74 SS G_CDS: -1.66 Total: -27.40 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.68 Total: 8.30 kcal Atomic # 7 Polarization: 3.62 SS G_CDS: -6.67 Total: -3.05 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -1.97 Total: -6.56 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.04 Total: -0.70 kcal Total: -26.81 -2.59 -29.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_13158378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.158 kcal (2) G-P(sol) polarization free energy of solvation -26.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds