Wall clock time and date at job start Tue Mar 9 2021 13:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86303 * 109.47200 * 2 1 4 4 C 1.50697 * 109.46992 * 119.99604 * 2 1 3 5 5 C 1.34711 * 125.66583 * 64.97646 * 4 2 1 6 6 C 1.40968 * 107.02856 * 179.74688 * 5 4 2 7 7 C 1.35931 * 106.74485 * 0.40743 * 6 5 4 8 8 C 1.47817 * 125.93342 * 179.85416 * 7 6 5 9 9 C 1.39805 * 119.99789 * 359.71107 * 8 7 6 10 10 C 1.37814 * 120.24482 * 180.02562 * 9 8 7 11 11 C 1.38779 * 120.24091 * 359.97438 * 10 9 8 12 12 O 1.35650 * 119.99709 * 180.02562 * 11 10 9 13 13 C 1.40244 * 119.99795 * 359.97438 * 11 10 9 14 14 C 1.47572 * 120.11940 * 180.02562 * 13 11 10 15 15 O 1.21588 * 120.00019 * 0.02562 * 14 13 11 16 16 N 1.34773 * 119.99737 * 180.02562 * 14 13 11 17 17 C 1.46503 * 119.99946 * 180.02562 * 16 14 13 18 18 H 1.09002 * 112.84825 * 336.19303 * 17 16 14 19 19 C 1.53955 * 113.74639 * 107.40070 * 17 16 14 20 20 C 1.53784 * 87.01938 * 139.94337 * 19 17 16 21 21 H 1.08994 * 113.61314 * 89.22770 * 20 19 17 22 22 C 1.50701 * 113.61229 * 220.04648 * 20 19 17 23 23 N 1.30502 * 125.64762 * 194.31314 * 22 20 19 24 24 C 1.34127 * 109.25213 * 180.29844 * 23 22 20 25 25 C 1.34664 * 108.02120 * 359.71946 * 24 23 22 26 26 N 1.35041 * 125.64885 * 14.13911 * 22 20 19 27 27 C 1.53780 * 113.61418 * 205.00053 * 17 16 14 28 28 C 1.39219 * 120.00325 * 179.97438 * 8 7 6 29 29 O 1.34348 * 125.66938 * 244.97588 * 4 2 1 30 30 H 0.96701 * 114.00473 * 300.00357 * 1 2 3 31 31 H 1.08997 * 109.47497 * 240.00016 * 2 1 3 32 32 H 1.48505 * 109.99766 * 299.99777 * 3 2 1 33 33 H 1.48495 * 110.00163 * 61.31620 * 3 2 1 34 34 H 1.08002 * 126.48307 * 0.04091 * 5 4 2 35 35 H 1.08006 * 126.62893 * 180.28287 * 6 5 4 36 36 H 1.07998 * 119.87787 * 0.03451 * 9 8 7 37 37 H 1.08001 * 119.87896 * 180.02562 * 10 9 8 38 38 H 0.96697 * 113.99860 * 269.97344 * 12 11 10 39 39 H 0.96998 * 120.00259 * 0.02562 * 16 14 13 40 40 H 1.09001 * 113.61197 * 25.42058 * 19 17 16 41 41 H 1.08997 * 113.66305 * 254.47040 * 19 17 16 42 42 H 1.08000 * 125.98932 * 179.73190 * 24 23 22 43 43 H 1.08001 * 126.59097 * 180.02562 * 25 24 23 44 44 H 0.97001 * 126.40228 * 359.97438 * 26 22 20 45 45 H 1.09000 * 113.61714 * 105.37898 * 27 17 16 46 46 H 1.09001 * 113.69157 * 334.49247 * 27 17 16 47 47 H 1.07999 * 120.11909 * 359.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7103 1.2305 5 6 1.7566 -2.0165 1.5097 6 6 2.3865 -2.2621 2.7466 7 6 2.9083 -1.0778 3.1623 8 6 3.6590 -0.8529 4.4157 9 6 3.8804 -1.9146 5.2980 10 6 4.5792 -1.7105 6.4681 11 6 5.0687 -0.4497 6.7791 12 8 5.7563 -0.2545 7.9320 13 6 4.8534 0.6223 5.9008 14 6 5.3732 1.9640 6.2286 15 8 5.9899 2.1415 7.2613 16 7 5.1644 2.9926 5.3830 17 6 5.6810 4.3244 5.7081 18 1 5.8353 4.4692 6.7774 19 6 6.8869 4.7482 4.8499 20 6 6.2588 6.1511 4.8035 21 1 6.5705 6.7963 5.6249 22 6 6.3739 6.8198 3.4579 23 7 6.1689 8.0861 3.2179 24 6 6.3547 8.3242 1.9111 25 6 6.6934 7.1626 1.3200 26 7 6.7093 6.2086 2.3014 27 6 4.9012 5.4680 5.0380 28 6 4.1408 0.4173 4.7202 29 8 2.6276 -0.1461 2.2313 30 1 -0.3934 0.4417 0.7650 31 1 1.7923 -0.5138 -0.8899 32 1 1.5615 2.4679 -1.2086 33 1 1.5879 2.4586 1.2241 34 1 1.2368 -2.7398 0.8989 35 1 2.4420 -3.2081 3.2649 36 1 3.5026 -2.8983 5.0615 37 1 4.7472 -2.5349 7.1452 38 1 5.2010 -0.0076 8.6841 39 1 4.6722 2.8510 4.5593 40 1 6.9263 4.2551 3.8786 41 1 7.8371 4.7125 5.3827 42 1 6.2510 9.2801 1.4191 43 1 6.9111 7.0126 0.2728 44 1 6.9184 5.2684 2.1868 45 1 4.2506 6.0126 5.7223 46 1 4.3960 5.1734 4.1181 47 1 3.9676 1.2396 4.0419 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14772358_13259648.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:54 Heat of formation + Delta-G solvation = 32.864587 kcal Electronic energy + Delta-G solvation = -34147.352320 eV Core-core repulsion = 29459.011956 eV Total energy + Delta-G solvation = -4688.340364 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.141 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.79703 -43.10156 -41.66600 -40.40065 -38.92445 -38.28978 -37.87727 -34.86510 -34.25014 -33.42467 -32.85303 -32.45765 -30.51308 -30.13139 -26.98086 -26.59188 -26.49284 -25.04273 -23.67981 -23.05442 -22.60822 -22.00758 -21.52602 -21.36687 -20.83636 -19.63077 -19.24227 -19.07583 -18.41461 -17.76275 -17.56775 -17.23581 -16.87949 -16.61759 -16.46844 -16.30143 -15.93686 -15.83999 -15.77643 -15.47274 -14.98071 -14.91721 -14.63651 -14.55722 -14.41645 -14.06754 -14.03470 -13.88808 -13.75574 -13.69691 -13.49935 -13.29699 -13.21836 -12.98622 -12.56125 -12.17480 -12.14612 -11.89327 -11.82428 -11.15628 -10.96634 -10.95714 -10.90545 -10.83654 -10.55060 -10.40056 -10.14483 -9.34144 -9.00182 -5.14952 -0.64821 -0.31544 0.67922 0.99602 1.07010 1.34798 1.40199 1.58327 1.80328 1.84555 1.91439 2.13961 2.19191 2.54006 3.01028 3.05037 3.16186 3.18985 3.28271 3.40163 3.46449 3.51594 3.64934 3.77839 3.84107 3.88595 3.92214 4.06759 4.11233 4.21748 4.28934 4.37194 4.45930 4.48459 4.49750 4.51993 4.56460 4.66989 4.69325 4.74004 4.76335 4.82160 4.91443 4.99080 5.03906 5.06985 5.16463 5.31643 5.35146 5.37846 5.80599 5.87712 6.13848 6.33048 6.36406 6.59809 7.10865 7.16032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.520 6.520 2 C -0.034 4.034 3 Si 0.695 3.305 4 C -0.050 4.050 5 C -0.168 4.168 6 C -0.188 4.188 7 C 0.035 3.965 8 C -0.034 4.034 9 C -0.052 4.052 10 C -0.148 4.148 11 C 0.181 3.819 12 O -0.475 6.475 13 C -0.165 4.165 14 C 0.562 3.438 15 O -0.513 6.513 16 N -0.719 5.719 17 C 0.128 3.872 18 H 0.125 0.875 19 C -0.150 4.150 20 C -0.022 4.022 21 H 0.126 0.874 22 C 0.220 3.780 23 N -0.486 5.486 24 C -0.027 4.027 25 C -0.056 4.056 26 N -0.566 5.566 27 C -0.134 4.134 28 C -0.054 4.054 29 O -0.167 6.167 30 H 0.381 0.619 31 H 0.137 0.863 32 H -0.248 1.248 33 H -0.255 1.255 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.400 0.600 39 H 0.399 0.601 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.171 0.829 43 H 0.178 0.822 44 H 0.417 0.583 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 -3.753 -2.647 4.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.326 6.326 2 C -0.143 4.143 3 Si 0.594 3.406 4 C -0.100 4.100 5 C -0.187 4.187 6 C -0.207 4.207 7 C -0.015 4.015 8 C -0.034 4.034 9 C -0.070 4.070 10 C -0.167 4.167 11 C 0.134 3.866 12 O -0.287 6.287 13 C -0.169 4.169 14 C 0.349 3.651 15 O -0.389 6.389 16 N -0.371 5.371 17 C 0.023 3.977 18 H 0.143 0.857 19 C -0.190 4.190 20 C -0.042 4.042 21 H 0.144 0.856 22 C -0.045 4.045 23 N -0.205 5.205 24 C -0.175 4.175 25 C -0.189 4.189 26 N -0.170 5.170 27 C -0.173 4.173 28 C -0.073 4.073 29 O -0.064 6.064 30 H 0.229 0.771 31 H 0.155 0.845 32 H -0.172 1.172 33 H -0.179 1.179 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.158 0.842 37 H 0.164 0.836 38 H 0.259 0.741 39 H 0.235 0.765 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.188 0.812 43 H 0.196 0.804 44 H 0.255 0.745 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.126 -2.257 -2.185 3.143 hybrid contribution -1.403 -1.441 -0.583 2.095 sum -1.530 -3.698 -2.768 4.866 Atomic orbital electron populations 1.86672 1.16642 1.80088 1.49246 1.24335 0.84018 1.12082 0.93911 0.94670 0.91294 0.73466 0.81135 1.22841 1.01115 0.93849 0.92189 1.21581 1.03549 0.95665 0.97947 1.21870 1.02754 0.98428 0.97606 1.20270 1.03076 0.87432 0.90699 1.17571 1.00271 0.94156 0.91429 1.21137 0.95504 0.98434 0.91962 1.21413 0.99251 0.97360 0.98636 1.18600 0.89212 0.90854 0.87945 1.84750 1.35209 1.90907 1.17824 1.20277 1.04484 0.94292 0.97824 1.18018 0.79582 0.83817 0.83655 1.90845 1.39408 1.83964 1.24663 1.45889 1.58066 1.08792 1.24379 1.22510 0.93703 0.80354 1.01094 0.85673 1.23613 0.99930 0.94456 1.00972 1.20761 0.97746 0.94497 0.91221 0.85605 1.22852 1.03575 0.89074 0.88949 1.70254 1.20450 1.13155 1.16634 1.22421 1.06109 0.98602 0.90350 1.22820 1.11048 0.89697 0.95361 1.43263 1.53597 1.11823 1.08266 1.23438 0.96483 0.95802 1.01590 1.21275 0.94399 0.96574 0.95046 1.83917 1.57960 1.38012 1.26528 0.77110 0.84505 1.17199 1.17864 0.82768 0.82759 0.84192 0.83589 0.74078 0.76518 0.90103 0.89415 0.81182 0.80437 0.74467 0.89270 0.89472 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.14 12.88 -35.23 -0.45 -0.32 16 2 C -0.03 0.05 2.98 36.00 0.11 0.16 16 3 Si 0.70 -1.45 32.11 -169.99 -5.46 -6.91 16 4 C -0.05 0.02 6.20 -35.56 -0.22 -0.20 16 5 C -0.17 0.04 10.78 -39.80 -0.43 -0.39 16 6 C -0.19 0.12 10.26 -39.38 -0.40 -0.29 16 7 C 0.04 -0.01 7.03 -36.49 -0.26 -0.26 16 8 C -0.03 0.03 5.87 -105.03 -0.62 -0.59 16 9 C -0.05 0.10 9.54 -39.15 -0.37 -0.28 16 10 C -0.15 0.21 9.96 -39.54 -0.39 -0.18 16 11 C 0.18 0.08 6.72 -38.63 -0.26 -0.18 16 12 O -0.48 -0.60 11.55 -40.60 -0.47 -1.07 16 13 C -0.17 -0.05 5.88 -104.90 -0.62 -0.67 16 14 C 0.56 0.79 7.76 -12.45 -0.10 0.69 16 15 O -0.51 -2.45 14.74 -16.66 -0.25 -2.69 16 16 N -0.72 1.08 5.31 -53.95 -0.29 0.79 16 17 C 0.13 -0.21 4.24 -67.03 -0.28 -0.50 16 18 H 0.13 -0.05 7.46 -51.93 -0.39 -0.43 16 19 C -0.15 0.35 7.38 -25.83 -0.19 0.16 16 20 C -0.02 0.03 4.28 -90.96 -0.39 -0.36 16 21 H 0.13 -0.15 8.14 -51.93 -0.42 -0.57 16 22 C 0.22 0.23 7.36 -155.42 -1.14 -0.91 16 23 N -0.49 -1.91 11.25 -10.82 -0.12 -2.04 16 24 C -0.03 -0.05 11.87 -17.81 -0.21 -0.26 16 25 C -0.06 0.03 12.04 -16.56 -0.20 -0.17 16 26 N -0.57 0.63 5.94 -10.23 -0.06 0.57 16 27 C -0.13 0.30 7.38 -25.92 -0.19 0.11 16 28 C -0.05 0.06 9.20 -38.78 -0.36 -0.30 16 29 O -0.17 0.02 8.80 4.57 0.04 0.06 16 30 H 0.38 -1.12 8.70 45.56 0.40 -0.72 16 31 H 0.14 -0.40 7.96 -51.93 -0.41 -0.82 16 32 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 33 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 34 H 0.15 -0.19 8.06 -52.49 -0.42 -0.61 16 35 H 0.15 -0.42 7.25 -52.48 -0.38 -0.80 16 36 H 0.14 -0.56 6.96 -52.49 -0.37 -0.93 16 37 H 0.15 -0.46 8.06 -52.49 -0.42 -0.88 16 38 H 0.40 -0.97 9.06 45.56 0.41 -0.56 16 39 H 0.40 -1.46 6.75 -40.82 -0.28 -1.73 16 40 H 0.08 -0.29 6.64 -51.93 -0.34 -0.63 16 41 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 42 H 0.17 0.02 8.06 -52.49 -0.42 -0.40 16 43 H 0.18 -0.64 8.06 -52.49 -0.42 -1.06 16 44 H 0.42 -1.66 7.54 -40.82 -0.31 -1.97 16 45 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 46 H 0.09 -0.23 8.07 -51.93 -0.42 -0.65 16 47 H 0.13 -0.40 6.24 -52.49 -0.33 -0.73 16 LS Contribution 402.82 15.07 6.07 6.07 Total: 0.00 -11.98 402.82 -12.08 -24.06 By element: Atomic # 1 Polarization: -9.53 SS G_CDS: -4.57 Total: -14.10 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -6.53 Total: -4.42 kcal Atomic # 7 Polarization: -0.21 SS G_CDS: -0.47 Total: -0.68 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: -1.13 Total: -4.03 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: -5.46 Total: -6.91 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -11.98 -12.08 -24.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_13259648.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.920 kcal (2) G-P(sol) polarization free energy of solvation -11.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds