Wall clock time and date at job start Tue Mar 9 2021 13:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86303 * 109.47200 * 2 1 4 4 C 1.50697 * 109.46992 * 119.99604 * 2 1 3 5 5 C 1.34711 * 125.66583 * 64.97646 * 4 2 1 6 6 C 1.40968 * 107.02856 * 179.74688 * 5 4 2 7 7 C 1.35931 * 106.74485 * 0.40743 * 6 5 4 8 8 C 1.47817 * 125.93342 * 179.85416 * 7 6 5 9 9 C 1.39805 * 119.99789 * 359.71107 * 8 7 6 10 10 C 1.37814 * 120.24482 * 180.02562 * 9 8 7 11 11 C 1.38779 * 120.24091 * 359.97438 * 10 9 8 12 12 O 1.35650 * 119.99709 * 180.02562 * 11 10 9 13 13 C 1.40244 * 119.99795 * 359.97438 * 11 10 9 14 14 C 1.47572 * 120.11940 * 180.02562 * 13 11 10 15 15 O 1.21588 * 120.00019 * 0.02562 * 14 13 11 16 16 N 1.34773 * 119.99737 * 180.02562 * 14 13 11 17 17 C 1.46503 * 119.99946 * 180.02562 * 16 14 13 18 18 H 1.09002 * 112.84825 * 336.19303 * 17 16 14 19 19 C 1.53955 * 113.74639 * 107.40070 * 17 16 14 20 20 C 1.53784 * 87.01938 * 139.94337 * 19 17 16 21 21 H 1.08994 * 113.61314 * 89.22770 * 20 19 17 22 22 C 1.50701 * 113.61229 * 220.04648 * 20 19 17 23 23 N 1.30502 * 125.64762 * 194.31314 * 22 20 19 24 24 C 1.34127 * 109.25213 * 180.29844 * 23 22 20 25 25 C 1.34664 * 108.02120 * 359.71946 * 24 23 22 26 26 N 1.35041 * 125.64885 * 14.13911 * 22 20 19 27 27 C 1.53780 * 113.61418 * 205.00053 * 17 16 14 28 28 C 1.39219 * 120.00325 * 179.97438 * 8 7 6 29 29 O 1.34348 * 125.66938 * 244.97588 * 4 2 1 30 30 H 0.96701 * 114.00473 * 300.00357 * 1 2 3 31 31 H 1.08997 * 109.47497 * 240.00016 * 2 1 3 32 32 H 1.48505 * 109.99766 * 299.99777 * 3 2 1 33 33 H 1.48495 * 110.00163 * 61.31620 * 3 2 1 34 34 H 1.08002 * 126.48307 * 0.04091 * 5 4 2 35 35 H 1.08006 * 126.62893 * 180.28287 * 6 5 4 36 36 H 1.07998 * 119.87787 * 0.03451 * 9 8 7 37 37 H 1.08001 * 119.87896 * 180.02562 * 10 9 8 38 38 H 0.96697 * 113.99860 * 269.97344 * 12 11 10 39 39 H 0.96998 * 120.00259 * 0.02562 * 16 14 13 40 40 H 1.09001 * 113.61197 * 25.42058 * 19 17 16 41 41 H 1.08997 * 113.66305 * 254.47040 * 19 17 16 42 42 H 1.08000 * 125.98932 * 179.73190 * 24 23 22 43 43 H 1.08001 * 126.59097 * 180.02562 * 25 24 23 44 44 H 0.97001 * 126.40228 * 359.97438 * 26 22 20 45 45 H 1.09000 * 113.61714 * 105.37898 * 27 17 16 46 46 H 1.09001 * 113.69157 * 334.49247 * 27 17 16 47 47 H 1.07999 * 120.11909 * 359.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7103 1.2305 5 6 1.7566 -2.0165 1.5097 6 6 2.3865 -2.2621 2.7466 7 6 2.9083 -1.0778 3.1623 8 6 3.6590 -0.8529 4.4157 9 6 3.8804 -1.9146 5.2980 10 6 4.5792 -1.7105 6.4681 11 6 5.0687 -0.4497 6.7791 12 8 5.7563 -0.2545 7.9320 13 6 4.8534 0.6223 5.9008 14 6 5.3732 1.9640 6.2286 15 8 5.9899 2.1415 7.2613 16 7 5.1644 2.9926 5.3830 17 6 5.6810 4.3244 5.7081 18 1 5.8353 4.4692 6.7774 19 6 6.8869 4.7482 4.8499 20 6 6.2588 6.1511 4.8035 21 1 6.5705 6.7963 5.6249 22 6 6.3739 6.8198 3.4579 23 7 6.1689 8.0861 3.2179 24 6 6.3547 8.3242 1.9111 25 6 6.6934 7.1626 1.3200 26 7 6.7093 6.2086 2.3014 27 6 4.9012 5.4680 5.0380 28 6 4.1408 0.4173 4.7202 29 8 2.6276 -0.1461 2.2313 30 1 -0.3934 0.4417 0.7650 31 1 1.7923 -0.5138 -0.8899 32 1 1.5615 2.4679 -1.2086 33 1 1.5879 2.4586 1.2241 34 1 1.2368 -2.7398 0.8989 35 1 2.4420 -3.2081 3.2649 36 1 3.5026 -2.8983 5.0615 37 1 4.7472 -2.5349 7.1452 38 1 5.2010 -0.0076 8.6841 39 1 4.6722 2.8510 4.5593 40 1 6.9263 4.2551 3.8786 41 1 7.8371 4.7125 5.3827 42 1 6.2510 9.2801 1.4191 43 1 6.9111 7.0126 0.2728 44 1 6.9184 5.2684 2.1868 45 1 4.2506 6.0126 5.7223 46 1 4.3960 5.1734 4.1181 47 1 3.9676 1.2396 4.0419 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_13259648.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:53 Heat of formation + Delta-G solvation = 30.922504 kcal Electronic energy + Delta-G solvation = -34147.436535 eV Core-core repulsion = 29459.011956 eV Total energy + Delta-G solvation = -4688.424579 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.70188 -43.09216 -41.64265 -40.32076 -38.93704 -38.20945 -37.82299 -34.88345 -34.16120 -33.44913 -32.76993 -32.34802 -30.48713 -30.03622 -26.84159 -26.54301 -26.38924 -24.96115 -23.58060 -22.98689 -22.57699 -21.96146 -21.50860 -21.30564 -20.76833 -19.55535 -19.17177 -19.00775 -18.34683 -17.71962 -17.48290 -17.16650 -16.80989 -16.54960 -16.37836 -16.25697 -15.87496 -15.79994 -15.75313 -15.44875 -14.94422 -14.83384 -14.56894 -14.48159 -14.37303 -13.98056 -13.95753 -13.80383 -13.63076 -13.56207 -13.43259 -13.19973 -13.11913 -12.89641 -12.48628 -12.16217 -12.06164 -11.84877 -11.73511 -11.06882 -11.02914 -11.01408 -10.89834 -10.80310 -10.48397 -10.31971 -10.07515 -9.33902 -8.90813 -4.99881 -0.55975 -0.20998 0.76757 1.09972 1.14204 1.45690 1.48779 1.69492 1.85919 1.91039 1.97083 2.13616 2.24219 2.62449 3.11782 3.20556 3.26252 3.30945 3.37457 3.51356 3.58619 3.65891 3.76691 3.89542 3.96033 4.01721 4.07366 4.21098 4.26233 4.35298 4.44383 4.50471 4.55342 4.58405 4.62514 4.64252 4.69533 4.77380 4.80022 4.85700 4.88737 4.95476 5.02150 5.06693 5.14700 5.18614 5.21147 5.43909 5.45471 5.51008 5.79929 5.97717 6.33282 6.40286 6.50024 6.73134 7.10770 7.14827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.039 4.039 3 Si 0.771 3.229 4 C -0.054 4.054 5 C -0.181 4.181 6 C -0.191 4.191 7 C 0.025 3.975 8 C -0.042 4.042 9 C -0.045 4.045 10 C -0.147 4.147 11 C 0.164 3.836 12 O -0.495 6.495 13 C -0.179 4.179 14 C 0.559 3.441 15 O -0.556 6.556 16 N -0.705 5.705 17 C 0.127 3.873 18 H 0.110 0.890 19 C -0.140 4.140 20 C -0.022 4.022 21 H 0.119 0.881 22 C 0.212 3.788 23 N -0.533 5.533 24 C -0.065 4.065 25 C -0.040 4.040 26 N -0.555 5.555 27 C -0.123 4.123 28 C -0.050 4.050 29 O -0.172 6.172 30 H 0.390 0.610 31 H 0.152 0.848 32 H -0.287 1.287 33 H -0.285 1.285 34 H 0.161 0.839 35 H 0.174 0.826 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.410 0.590 39 H 0.411 0.589 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.176 0.824 43 H 0.212 0.788 44 H 0.432 0.568 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.955 -5.373 -3.975 6.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.148 4.148 3 Si 0.675 3.325 4 C -0.103 4.103 5 C -0.200 4.200 6 C -0.209 4.209 7 C -0.025 4.025 8 C -0.042 4.042 9 C -0.063 4.063 10 C -0.166 4.166 11 C 0.118 3.882 12 O -0.308 6.308 13 C -0.183 4.183 14 C 0.347 3.653 15 O -0.435 6.435 16 N -0.357 5.357 17 C 0.022 3.978 18 H 0.127 0.873 19 C -0.179 4.179 20 C -0.043 4.043 21 H 0.137 0.863 22 C -0.053 4.053 23 N -0.253 5.253 24 C -0.212 4.212 25 C -0.174 4.174 26 N -0.160 5.160 27 C -0.162 4.162 28 C -0.069 4.069 29 O -0.070 6.070 30 H 0.240 0.760 31 H 0.169 0.831 32 H -0.214 1.214 33 H -0.212 1.212 34 H 0.179 0.821 35 H 0.191 0.809 36 H 0.181 0.819 37 H 0.180 0.820 38 H 0.271 0.729 39 H 0.249 0.751 40 H 0.117 0.883 41 H 0.100 0.900 42 H 0.193 0.807 43 H 0.228 0.772 44 H 0.273 0.727 45 H 0.105 0.895 46 H 0.115 0.885 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.297 -3.898 -3.534 5.270 hybrid contribution -1.409 -0.924 -0.206 1.697 sum -1.706 -4.821 -3.740 6.336 Atomic orbital electron populations 1.86644 1.17403 1.80419 1.50033 1.24552 0.83483 1.12617 0.94159 0.93777 0.90103 0.71466 0.77179 1.23017 1.01009 0.94017 0.92300 1.21800 1.03867 0.95973 0.98404 1.22155 1.02187 0.99085 0.97506 1.20426 1.03498 0.87662 0.90889 1.17692 1.00458 0.94523 0.91544 1.21414 0.94484 0.99222 0.91188 1.21577 0.98872 0.97018 0.99099 1.18891 0.89737 0.91760 0.87852 1.84706 1.36392 1.91086 1.18644 1.20254 1.05568 0.93792 0.98641 1.18263 0.79056 0.84629 0.83311 1.90819 1.41544 1.84647 1.26444 1.45791 1.57362 1.08260 1.24304 1.22440 0.94458 0.80392 1.00499 0.87253 1.23573 0.99180 0.93611 1.01534 1.20760 0.98592 0.94715 0.90235 0.86278 1.23079 1.03451 0.88731 0.90025 1.70178 1.22168 1.14967 1.18018 1.22740 1.08077 1.00106 0.90284 1.23293 1.08729 0.88809 0.96587 1.43242 1.52702 1.12553 1.07528 1.23375 0.96013 0.95051 1.01775 1.21394 0.93637 0.97205 0.94625 1.83898 1.58133 1.38279 1.26694 0.76046 0.83054 1.21411 1.21166 0.82144 0.80907 0.81859 0.81979 0.72876 0.75087 0.88322 0.89988 0.80683 0.77180 0.72706 0.89470 0.88504 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.52 12.88 -148.98 -1.92 -1.40 16 2 C -0.04 0.15 2.98 71.23 0.21 0.37 16 3 Si 0.77 -3.52 32.11 68.60 2.20 -1.32 16 4 C -0.05 0.10 6.20 24.88 0.15 0.25 16 5 C -0.18 0.28 10.78 22.13 0.24 0.52 16 6 C -0.19 0.51 10.26 22.40 0.23 0.74 16 7 C 0.02 -0.04 7.03 24.27 0.17 0.13 16 8 C -0.04 0.11 5.87 -20.13 -0.12 -0.01 16 9 C -0.05 0.23 9.54 22.55 0.22 0.45 16 10 C -0.15 0.51 9.96 22.30 0.22 0.74 16 11 C 0.16 0.23 6.72 22.89 0.15 0.38 16 12 O -0.49 -1.86 11.55 -68.66 -0.79 -2.66 16 13 C -0.18 -0.18 5.88 -20.04 -0.12 -0.30 16 14 C 0.56 2.06 7.76 86.71 0.67 2.74 16 15 O -0.56 -6.28 14.74 16.99 0.25 -6.03 16 16 N -0.71 2.00 5.31 -442.88 -2.35 -0.36 16 17 C 0.13 -0.35 4.24 45.58 0.19 -0.15 16 18 H 0.11 0.11 7.46 -2.39 -0.02 0.09 16 19 C -0.14 0.64 7.38 31.18 0.23 0.87 16 20 C -0.02 0.04 4.28 -11.01 -0.05 -0.01 16 21 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 22 C 0.21 0.51 7.36 138.13 1.02 1.53 16 23 N -0.53 -4.81 11.25 -188.13 -2.12 -6.92 16 24 C -0.07 -0.30 11.87 83.52 0.99 0.69 16 25 C -0.04 0.07 12.04 83.08 1.00 1.07 16 26 N -0.56 1.74 5.94 -186.27 -1.11 0.63 16 27 C -0.12 0.52 7.38 31.12 0.23 0.75 16 28 C -0.05 0.14 9.20 22.79 0.21 0.35 16 29 O -0.17 0.20 8.80 -6.57 -0.06 0.14 16 30 H 0.39 -2.36 8.70 -74.06 -0.64 -3.00 16 31 H 0.15 -1.08 7.96 -2.39 -0.02 -1.10 16 32 H -0.29 -0.55 7.11 99.48 0.71 0.15 16 33 H -0.29 -0.14 7.11 99.48 0.71 0.57 16 34 H 0.16 -0.55 8.06 -2.91 -0.02 -0.58 16 35 H 0.17 -1.29 7.25 -2.91 -0.02 -1.31 16 36 H 0.16 -1.68 6.96 -2.91 -0.02 -1.70 16 37 H 0.16 -1.18 8.06 -2.91 -0.02 -1.20 16 38 H 0.41 -1.31 9.06 -74.06 -0.67 -1.99 16 39 H 0.41 -3.27 6.75 -92.71 -0.63 -3.90 16 40 H 0.10 -0.82 6.64 -2.39 -0.02 -0.84 16 41 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 43 H 0.21 -1.99 8.06 -2.91 -0.02 -2.01 16 44 H 0.43 -4.16 7.54 -92.71 -0.70 -4.86 16 45 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 46 H 0.10 -0.57 8.07 -2.39 -0.02 -0.59 16 47 H 0.15 -1.03 6.24 -2.91 -0.02 -1.05 16 Total: 0.00 -29.03 402.82 -1.55 -30.57 By element: Atomic # 1 Polarization: -22.25 SS G_CDS: -1.51 Total: -23.76 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 5.86 Total: 11.10 kcal Atomic # 7 Polarization: -1.08 SS G_CDS: -5.58 Total: -6.65 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -2.52 Total: -9.95 kcal Atomic # 14 Polarization: -3.52 SS G_CDS: 2.20 Total: -1.32 kcal Total: -29.03 -1.55 -30.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_13259648.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.494 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds