Wall clock time and date at job start Tue Mar 9 2021 13:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38973 * 119.95854 * 2 1 4 4 O 1.35712 * 119.90868 * 359.97438 * 3 2 1 5 5 C 1.39019 * 120.18172 * 180.02562 * 3 2 1 6 6 C 1.50695 * 119.95775 * 180.02562 * 5 3 2 7 7 O 1.42898 * 109.47066 * 284.99718 * 6 5 3 8 8 Si 1.86299 * 109.47121 * 164.99654 * 6 5 3 9 9 C 1.37681 * 120.08571 * 359.66706 * 5 3 2 10 10 C 1.39753 * 119.90900 * 0.61146 * 9 5 3 11 11 C 1.47611 * 120.08780 * 179.69237 * 10 9 5 12 12 O 1.21585 * 119.99653 * 359.72225 * 11 10 9 13 13 N 1.34770 * 119.99941 * 179.71934 * 11 10 9 14 14 C 1.46506 * 119.99972 * 179.97438 * 13 11 10 15 15 H 1.08997 * 112.84438 * 23.81170 * 14 13 11 16 16 C 1.53775 * 113.61195 * 155.00276 * 14 13 11 17 17 C 1.53776 * 87.08087 * 139.98568 * 16 14 13 18 18 H 1.09004 * 113.61939 * 89.19529 * 17 16 14 19 19 C 1.50704 * 113.61431 * 220.02099 * 17 16 14 20 20 N 1.30500 * 125.64894 * 265.01796 * 19 17 16 21 21 C 1.34127 * 109.25894 * 179.97438 * 20 19 17 22 22 C 1.34665 * 108.01668 * 0.26753 * 21 20 19 23 23 N 1.35045 * 125.65522 * 84.99919 * 19 17 16 24 24 C 1.53778 * 113.61612 * 252.50227 * 14 13 11 25 25 C 1.37726 * 119.95804 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47008 * 270.02406 * 1 2 3 27 27 H 1.08996 * 109.47271 * 30.02266 * 1 2 3 28 28 H 1.09000 * 109.46877 * 150.02644 * 1 2 3 29 29 H 0.96704 * 114.00217 * 90.00257 * 4 3 2 30 30 H 1.09003 * 109.47549 * 44.99458 * 6 5 3 31 31 H 0.96698 * 114.00140 * 179.97438 * 7 6 5 32 32 H 1.48498 * 109.99976 * 59.99924 * 8 6 5 33 33 H 1.48504 * 110.00125 * 181.31797 * 8 6 5 34 34 H 1.08003 * 120.05004 * 180.32017 * 9 5 3 35 35 H 0.97000 * 120.00172 * 0.02562 * 13 11 10 36 36 H 1.09007 * 113.61977 * 25.43657 * 16 14 13 37 37 H 1.09000 * 113.61566 * 254.53175 * 16 14 13 38 38 H 1.08002 * 125.98809 * 179.97438 * 21 20 19 39 39 H 1.08002 * 126.58770 * 179.69323 * 22 21 20 40 40 H 0.97005 * 126.39044 * 0.05494 * 23 19 17 41 41 H 1.08993 * 113.61543 * 105.47024 * 24 14 13 42 42 H 1.09007 * 113.61440 * 334.56589 * 24 14 13 43 43 H 1.07998 * 120.04247 * 0.04468 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2040 0.0000 4 8 1.5197 2.3778 -0.0005 5 6 3.5912 1.2095 -0.0005 6 6 4.3386 2.5180 0.0000 7 8 4.2716 3.1054 -1.3009 8 14 6.1199 2.2154 0.4539 9 6 4.2860 0.0209 0.0059 10 6 3.5919 -1.1921 0.0000 11 6 4.3329 -2.4688 -0.0001 12 8 5.5487 -2.4659 -0.0001 13 7 3.6617 -3.6374 -0.0001 14 6 4.3972 -4.9045 -0.0007 15 1 5.4046 -4.8093 0.4044 16 6 3.6022 -6.0784 0.5948 17 6 4.1916 -6.9456 -0.5300 18 1 5.1427 -7.4105 -0.2703 19 6 3.2056 -7.9205 -1.1204 20 7 3.0637 -9.1681 -0.7648 21 6 2.0944 -9.7307 -1.5018 22 6 1.6217 -8.7978 -2.3502 23 7 2.3222 -7.6478 -2.1048 24 6 4.3394 -5.6497 -1.3446 25 6 2.1947 -1.1932 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 1.3219 2.7182 0.8827 30 1 3.8881 3.1935 0.7273 31 1 4.7322 3.9525 -1.3742 32 1 6.7456 1.2959 -0.5301 33 1 6.8607 3.5021 0.4890 34 1 5.3660 0.0258 0.0107 35 1 2.6917 -3.6397 -0.0004 36 1 2.5214 -5.9524 0.5283 37 1 3.9347 -6.3703 1.5910 38 1 1.7561 -10.7539 -1.4307 39 1 0.8389 -8.9311 -3.0823 40 1 2.2086 -6.7970 -2.5567 41 1 5.2671 -5.5954 -1.9142 42 1 3.4603 -5.4064 -1.9414 43 1 1.6548 -2.1285 0.0002 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_13287732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:05 Heat of formation + Delta-G solvation = 3.834841 kcal Electronic energy + Delta-G solvation = -27438.974202 eV Core-core repulsion = 23452.735627 eV Total energy + Delta-G solvation = -3986.238575 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.09719 -41.75172 -40.74559 -39.30310 -37.91555 -37.51044 -34.92701 -34.05865 -33.45256 -31.91926 -30.45745 -27.99209 -27.03076 -26.81951 -26.33133 -24.46063 -22.62911 -22.00969 -21.74862 -21.47473 -20.70177 -19.52618 -19.02971 -18.63319 -18.52901 -17.73933 -16.94477 -16.56403 -16.44241 -16.10833 -16.02307 -15.77648 -15.58805 -15.19464 -14.91343 -14.79550 -14.60561 -14.27586 -14.04814 -13.97788 -13.68914 -13.59881 -13.55453 -13.43433 -12.93673 -12.90300 -12.66228 -12.49117 -12.02148 -11.97613 -11.72482 -11.48147 -11.12663 -11.02993 -11.01184 -10.53607 -10.23040 -9.97023 -9.64570 -9.34384 -5.02880 -0.39611 0.06378 1.09490 1.18762 1.48570 1.58597 1.87178 1.96604 2.13360 2.23326 2.53163 3.09904 3.27009 3.32141 3.37544 3.57128 3.60350 3.64156 3.72499 3.78656 3.96951 3.99791 4.14104 4.25594 4.33990 4.42360 4.51694 4.56684 4.59203 4.63166 4.65482 4.73648 4.78550 4.83504 4.85964 4.98295 5.04331 5.05362 5.11656 5.18553 5.21470 5.32331 5.45251 5.61442 5.79494 6.41571 6.48882 6.53978 6.76966 7.08800 7.14434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.121 4.121 3 C 0.158 3.842 4 O -0.495 6.495 5 C -0.119 4.119 6 C -0.064 4.064 7 O -0.553 6.553 8 Si 0.743 3.257 9 C -0.066 4.066 10 C -0.152 4.152 11 C 0.561 3.439 12 O -0.576 6.576 13 N -0.698 5.698 14 C 0.125 3.875 15 H 0.109 0.891 16 C -0.118 4.118 17 C -0.024 4.024 18 H 0.119 0.881 19 C 0.213 3.787 20 N -0.532 5.532 21 C -0.064 4.064 22 C -0.042 4.042 23 N -0.556 5.556 24 C -0.142 4.142 25 C -0.053 4.053 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.413 0.587 30 H 0.104 0.896 31 H 0.394 0.606 32 H -0.311 1.311 33 H -0.275 1.275 34 H 0.127 0.873 35 H 0.416 0.584 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.177 0.823 39 H 0.210 0.790 40 H 0.431 0.569 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 2.339 2.551 8.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.121 4.121 3 C 0.112 3.888 4 O -0.309 6.309 5 C -0.120 4.120 6 C -0.174 4.174 7 O -0.363 6.363 8 Si 0.650 3.350 9 C -0.085 4.085 10 C -0.155 4.155 11 C 0.350 3.650 12 O -0.457 6.457 13 N -0.350 5.350 14 C 0.020 3.980 15 H 0.127 0.873 16 C -0.157 4.157 17 C -0.044 4.044 18 H 0.137 0.863 19 C -0.051 4.051 20 N -0.253 5.253 21 C -0.210 4.210 22 C -0.177 4.177 23 N -0.161 5.161 24 C -0.181 4.181 25 C -0.072 4.072 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.274 0.726 30 H 0.121 0.879 31 H 0.245 0.755 32 H -0.239 1.239 33 H -0.202 1.202 34 H 0.145 0.855 35 H 0.255 0.745 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.194 0.806 39 H 0.226 0.774 40 H 0.272 0.728 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.855 1.375 2.225 6.413 hybrid contribution -0.618 1.505 -1.391 2.141 sum -6.473 2.881 0.834 7.134 Atomic orbital electron populations 1.20765 0.88040 1.04037 1.03885 1.20456 0.98420 0.91658 1.01615 1.18438 0.88474 0.86099 0.95742 1.84729 1.75351 1.35577 1.35232 1.19652 0.93700 0.93930 1.04714 1.24631 1.10015 0.94405 0.88311 1.86585 1.77871 1.41454 1.30396 0.94337 0.73489 0.78556 0.88664 1.21078 1.00248 0.91266 0.95875 1.19790 0.94465 0.92488 1.08792 1.18372 0.86770 0.84589 0.75249 1.90797 1.15303 1.88090 1.51507 1.45710 1.10825 1.04346 1.74086 1.22444 0.97666 0.81084 0.96836 0.87304 1.23359 1.01023 0.92375 0.98992 1.20775 0.96376 0.90314 0.96956 0.86299 1.23103 0.96202 0.93147 0.92693 1.70181 1.20082 1.06796 1.28213 1.22745 0.98542 1.01596 0.98158 1.23274 1.02878 0.86106 1.05407 1.43247 1.29164 1.13412 1.30264 1.23556 1.03910 0.93273 0.97388 1.21366 0.91451 0.99137 0.95220 0.89215 0.91349 0.89716 0.72588 0.87864 0.75540 1.23919 1.20154 0.85533 0.74547 0.88108 0.89224 0.80611 0.77373 0.72796 0.90249 0.88323 0.81699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.82 9.78 71.24 0.70 1.52 16 2 C -0.12 0.35 5.89 -19.81 -0.12 0.23 16 3 C 0.16 0.07 6.66 22.63 0.15 0.22 16 4 O -0.49 0.86 11.85 -90.33 -1.07 -0.21 16 5 C -0.12 -0.37 5.30 -19.81 -0.11 -0.47 16 6 C -0.06 -0.05 2.36 71.23 0.17 0.11 16 7 O -0.55 -2.51 12.86 -148.98 -1.92 -4.43 16 8 Si 0.74 1.31 30.18 68.60 2.07 3.38 16 9 C -0.07 -0.35 8.20 22.50 0.18 -0.17 16 10 C -0.15 -0.33 5.88 -20.08 -0.12 -0.44 16 11 C 0.56 2.32 7.76 86.72 0.67 2.99 16 12 O -0.58 -7.55 15.94 -3.98 -0.06 -7.61 16 13 N -0.70 2.72 5.30 -443.14 -2.35 0.37 16 14 C 0.12 -0.42 4.24 45.51 0.19 -0.23 16 15 H 0.11 0.08 7.46 -2.39 -0.02 0.07 16 16 C -0.12 0.65 7.38 31.12 0.23 0.88 16 17 C -0.02 0.06 4.29 -11.01 -0.05 0.01 16 18 H 0.12 -0.14 8.14 -2.39 -0.02 -0.16 16 19 C 0.21 0.42 7.36 138.13 1.02 1.44 16 20 N -0.53 -4.58 11.25 -188.13 -2.12 -6.69 16 21 C -0.06 -0.28 11.87 83.52 0.99 0.71 16 22 C -0.04 0.08 12.04 83.09 1.00 1.08 16 23 N -0.56 1.82 5.94 -186.27 -1.11 0.71 16 24 C -0.14 0.69 7.35 31.12 0.23 0.92 16 25 C -0.05 0.22 9.18 22.51 0.21 0.43 16 26 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 27 H 0.07 -0.33 7.52 -2.39 -0.02 -0.35 16 28 H 0.08 -0.85 8.08 -2.39 -0.02 -0.87 16 29 H 0.41 -4.83 9.06 -74.05 -0.67 -5.50 16 30 H 0.10 -0.52 7.82 -2.39 -0.02 -0.54 16 31 H 0.39 -1.45 8.74 -74.06 -0.65 -2.10 16 32 H -0.31 -3.63 6.76 99.48 0.67 -2.96 16 33 H -0.28 -1.19 7.11 99.48 0.71 -0.49 16 34 H 0.13 1.06 4.47 -2.91 -0.01 1.04 16 35 H 0.42 -4.40 6.75 -92.71 -0.63 -5.02 16 36 H 0.10 -0.79 8.07 -2.38 -0.02 -0.81 16 37 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 39 H 0.21 -1.91 8.06 -2.91 -0.02 -1.93 16 40 H 0.43 -4.13 7.53 -92.70 -0.70 -4.83 16 41 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.10 -0.85 6.64 -2.38 -0.02 -0.87 16 43 H 0.17 -1.97 6.39 -2.91 -0.02 -1.99 16 Total: 0.00 -31.26 359.95 -2.73 -33.99 By element: Atomic # 1 Polarization: -27.22 SS G_CDS: -1.53 Total: -28.75 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 5.35 Total: 9.24 kcal Atomic # 7 Polarization: -0.04 SS G_CDS: -5.57 Total: -5.61 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -3.05 Total: -12.24 kcal Atomic # 14 Polarization: 1.31 SS G_CDS: 2.07 Total: 3.38 kcal Total: -31.26 -2.73 -33.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_13287732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.821 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds