Wall clock time and date at job start Tue Mar 9 2021 13:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47079 * 2 1 4 4 C 1.50691 * 109.47131 * 240.00144 * 2 1 3 5 5 C 1.38244 * 119.97675 * 119.97914 * 4 2 1 6 6 C 1.38284 * 120.11382 * 180.02562 * 5 4 2 7 7 C 1.38130 * 120.05701 * 359.67925 * 6 5 4 8 8 C 1.38750 * 119.94035 * 0.59834 * 7 6 5 9 9 O 1.35898 * 120.05837 * 179.70178 * 8 7 6 10 10 C 1.42908 * 116.99622 * 359.71978 * 9 8 7 11 11 C 1.50700 * 109.46813 * 180.02562 * 10 9 8 12 12 O 1.21275 * 120.00497 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99279 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99464 * 180.02562 * 13 11 10 15 15 H 1.08997 * 112.85272 * 23.79506 * 14 13 11 16 16 C 1.53783 * 113.61579 * 154.99914 * 14 13 11 17 17 C 1.53782 * 87.07940 * 139.97592 * 16 14 13 18 18 H 1.08997 * 113.61229 * 89.20487 * 17 16 14 19 19 C 1.50704 * 113.61362 * 220.01870 * 17 16 14 20 20 N 1.30504 * 125.64940 * 265.02906 * 19 17 16 21 21 C 1.34120 * 109.25474 * 179.73737 * 20 19 17 22 22 C 1.34663 * 108.02403 * 359.97438 * 21 20 19 23 23 N 1.35042 * 125.65148 * 84.72260 * 19 17 16 24 24 C 1.53775 * 87.08603 * 334.56907 * 17 16 14 25 25 C 1.38167 * 119.96929 * 299.99960 * 4 2 1 26 26 H 0.96705 * 114.00054 * 300.00396 * 1 2 3 27 27 H 1.09000 * 109.46586 * 119.99426 * 2 1 3 28 28 H 1.48501 * 110.00247 * 299.99919 * 3 2 1 29 29 H 1.48504 * 110.00102 * 61.31874 * 3 2 1 30 30 H 1.07999 * 119.94133 * 0.02562 * 5 4 2 31 31 H 1.08004 * 119.97411 * 179.97438 * 6 5 4 32 32 H 1.07996 * 120.03149 * 180.31983 * 7 6 5 33 33 H 1.08999 * 109.46761 * 60.00334 * 10 9 8 34 34 H 1.08996 * 109.47329 * 300.00362 * 10 9 8 35 35 H 0.96993 * 120.00589 * 359.97438 * 13 11 10 36 36 H 1.08998 * 113.61106 * 25.43100 * 16 14 13 37 37 H 1.08991 * 113.68942 * 254.53783 * 16 14 13 38 38 H 1.08010 * 125.99023 * 180.02562 * 21 20 19 39 39 H 1.08005 * 126.59404 * 180.02562 * 22 21 20 40 40 H 0.96999 * 126.39641 * 0.25473 * 23 19 17 41 41 H 1.08992 * 113.62117 * 139.98189 * 24 17 16 42 42 H 1.09006 * 113.61193 * 270.88609 * 24 17 16 43 43 H 1.08003 * 120.03413 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2304 5 6 2.7257 -0.0379 -2.1403 6 6 3.1878 -0.6868 -3.2706 7 6 2.8619 -2.0111 -3.4899 8 6 2.0600 -2.6866 -2.5812 9 8 1.7330 -3.9877 -2.7977 10 6 2.2447 -4.5963 -3.9851 11 6 1.7811 -6.0285 -4.0553 12 8 1.0811 -6.4832 -3.1756 13 7 2.1446 -6.8041 -5.0960 14 6 1.6934 -8.1963 -5.1646 15 1 0.7828 -8.3748 -4.5927 16 6 1.6424 -8.7575 -6.5954 17 6 2.2014 -10.0682 -6.0170 18 1 1.4302 -10.7603 -5.6792 19 6 3.2324 -10.7255 -6.8980 20 7 2.9981 -11.6669 -7.7709 21 6 4.1468 -12.0064 -8.3743 22 6 5.1302 -11.2463 -7.8561 23 7 4.5508 -10.4339 -6.9191 24 6 2.8077 -9.2193 -4.8872 25 6 1.5972 -2.0331 -1.4484 26 1 -0.3933 0.4418 0.7651 27 1 1.7922 -0.5138 0.8901 28 1 1.5615 2.4680 -1.2085 29 1 1.5879 2.4586 1.2242 30 1 2.9859 0.9961 -1.9680 31 1 3.8079 -0.1592 -3.9802 32 1 3.2273 -2.5190 -4.3702 33 1 3.3342 -4.5671 -3.9677 34 1 1.8806 -4.0537 -4.8574 35 1 2.7042 -6.4404 -5.7998 36 1 2.3238 -8.2587 -7.2846 37 1 0.6320 -8.8517 -6.9931 38 1 4.2627 -12.7573 -9.1420 39 1 6.1753 -11.2727 -8.1274 40 1 5.0027 -9.7719 -6.3727 41 1 2.7375 -9.6857 -3.9047 42 1 3.8077 -8.8467 -5.1095 43 1 0.9759 -2.5580 -0.7378 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14772358_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:35 Heat of formation + Delta-G solvation = 20.986506 kcal Electronic energy + Delta-G solvation = -26392.022848 eV Core-core repulsion = 22406.528025 eV Total energy + Delta-G solvation = -3985.494823 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.13957 -41.60841 -40.91324 -39.55191 -38.68264 -37.37206 -34.85244 -33.46130 -32.61162 -31.77533 -30.72943 -29.31766 -27.02724 -26.87231 -25.94506 -23.66074 -22.94756 -22.49014 -21.72140 -21.59159 -20.83178 -19.30573 -19.04907 -18.53842 -18.23383 -17.54620 -17.46816 -17.13776 -16.74828 -16.57129 -15.87582 -15.81572 -15.67956 -15.53793 -15.03366 -14.95715 -14.65737 -14.56508 -14.17012 -14.03148 -13.82845 -13.79055 -13.72038 -13.47333 -13.30966 -12.64022 -12.49474 -12.23030 -12.14897 -12.02949 -11.88019 -11.69879 -11.00480 -10.98916 -10.94701 -10.57372 -10.29200 -9.89266 -9.37699 -9.26716 -4.98178 0.19764 0.40910 1.03134 1.22441 1.38207 1.39666 1.58554 1.94094 2.06090 2.16041 2.48599 2.62446 3.12421 3.23186 3.29998 3.39670 3.42149 3.59747 3.69701 3.75015 3.81914 3.84453 3.86533 4.02664 4.07445 4.20214 4.23131 4.31875 4.43503 4.45234 4.48569 4.50737 4.58997 4.63789 4.71034 4.78182 4.95671 4.97012 5.12098 5.21860 5.27792 5.34477 5.46299 5.63176 5.77293 6.16480 6.32536 6.33250 6.42295 6.99422 7.12663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.079 4.079 3 Si 0.687 3.313 4 C -0.033 4.033 5 C -0.151 4.151 6 C -0.072 4.072 7 C -0.207 4.207 8 C 0.128 3.872 9 O -0.288 6.288 10 C 0.040 3.960 11 C 0.517 3.483 12 O -0.508 6.508 13 N -0.719 5.719 14 C 0.128 3.872 15 H 0.126 0.874 16 C -0.132 4.132 17 C -0.022 4.022 18 H 0.126 0.874 19 C 0.219 3.781 20 N -0.485 5.485 21 C -0.026 4.026 22 C -0.056 4.056 23 N -0.566 5.566 24 C -0.151 4.151 25 C -0.119 4.119 26 H 0.381 0.619 27 H 0.080 0.920 28 H -0.255 1.255 29 H -0.261 1.261 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.403 0.597 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.171 0.829 39 H 0.178 0.822 40 H 0.417 0.583 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.268 3.011 -1.727 8.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.188 4.188 3 Si 0.588 3.412 4 C -0.033 4.033 5 C -0.168 4.168 6 C -0.090 4.090 7 C -0.225 4.225 8 C 0.083 3.917 9 O -0.201 6.201 10 C -0.039 4.039 11 C 0.302 3.698 12 O -0.381 6.381 13 N -0.372 5.372 14 C 0.024 3.976 15 H 0.144 0.856 16 C -0.171 4.171 17 C -0.042 4.042 18 H 0.144 0.856 19 C -0.045 4.045 20 N -0.204 5.204 21 C -0.174 4.174 22 C -0.190 4.190 23 N -0.170 5.170 24 C -0.190 4.190 25 C -0.137 4.137 26 H 0.229 0.771 27 H 0.098 0.902 28 H -0.179 1.179 29 H -0.186 1.186 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.237 0.763 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.189 0.811 39 H 0.195 0.805 40 H 0.255 0.745 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.728 2.685 -1.703 6.551 hybrid contribution 0.552 0.590 0.196 0.832 sum 6.280 3.275 -1.507 7.241 Atomic orbital electron populations 1.86601 1.17553 1.80219 1.49796 1.24858 0.84708 1.11134 0.98138 0.95023 0.91643 0.74263 0.80312 1.19040 0.96453 0.92916 0.94932 1.20878 1.00960 0.99899 0.95112 1.20875 0.97989 0.93588 0.96585 1.21275 1.03645 0.96628 1.00995 1.19004 0.94920 0.82980 0.94808 1.86172 1.70464 1.22590 1.40841 1.22465 1.00217 0.92165 0.89036 1.20097 0.80555 0.86947 0.82205 1.90794 1.35701 1.74195 1.37453 1.45784 1.54184 1.12238 1.24984 1.22511 0.98681 0.78838 0.97612 0.85642 1.23433 1.03286 0.94437 0.95986 1.20756 0.95127 0.95019 0.93326 0.85562 1.22856 0.83401 0.97956 1.00311 1.70254 1.28302 1.12763 1.09084 1.22430 0.88258 1.03151 1.03563 1.22823 1.00536 0.98425 0.97194 1.43259 1.08930 1.32375 1.32410 1.23584 0.98887 0.96789 0.99743 1.20244 1.02410 0.94015 0.97070 0.77099 0.90244 1.17924 1.18602 0.85263 0.84975 0.85247 0.88737 0.88707 0.76279 0.89358 0.89180 0.81128 0.80459 0.74523 0.89417 0.90082 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.95 12.74 -35.23 -0.45 -1.40 16 2 C -0.08 -0.03 2.81 36.00 0.10 0.07 16 3 Si 0.69 -0.63 29.79 -169.99 -5.06 -5.69 16 4 C -0.03 -0.06 5.42 -104.65 -0.57 -0.62 16 5 C -0.15 -0.05 8.67 -39.56 -0.34 -0.39 16 6 C -0.07 0.04 10.04 -39.60 -0.40 -0.36 16 7 C -0.21 0.04 9.04 -39.43 -0.36 -0.31 16 8 C 0.13 0.29 6.69 -39.21 -0.26 0.02 16 9 O -0.29 -0.86 9.67 -39.33 -0.38 -1.24 16 10 C 0.04 -0.05 5.22 36.01 0.19 0.13 16 11 C 0.52 0.31 7.91 -10.99 -0.09 0.22 16 12 O -0.51 -2.90 16.10 -14.35 -0.23 -3.13 16 13 N -0.72 2.06 5.36 -53.01 -0.28 1.78 16 14 C 0.13 -0.29 4.24 -67.11 -0.28 -0.57 16 15 H 0.13 -0.06 7.46 -51.93 -0.39 -0.45 16 16 C -0.13 0.37 7.38 -25.92 -0.19 0.18 16 17 C -0.02 0.04 4.29 -90.96 -0.39 -0.35 16 18 H 0.13 -0.18 8.14 -51.93 -0.42 -0.61 16 19 C 0.22 0.16 7.36 -155.41 -1.14 -0.98 16 20 N -0.48 -1.78 11.25 -10.81 -0.12 -1.91 16 21 C -0.03 -0.05 11.87 -17.82 -0.21 -0.26 16 22 C -0.06 0.04 12.04 -16.56 -0.20 -0.16 16 23 N -0.57 0.81 5.94 -10.23 -0.06 0.75 16 24 C -0.15 0.44 7.35 -25.92 -0.19 0.25 16 25 C -0.12 -0.35 9.55 -39.43 -0.38 -0.73 16 26 H 0.38 -0.89 8.74 45.56 0.40 -0.49 16 27 H 0.08 -0.10 7.96 -51.93 -0.41 -0.52 16 28 H -0.25 -0.56 7.11 56.52 0.40 -0.16 16 29 H -0.26 -0.28 7.11 56.52 0.40 0.12 16 30 H 0.13 -0.21 4.87 -52.49 -0.26 -0.46 16 31 H 0.13 -0.41 8.06 -52.48 -0.42 -0.84 16 32 H 0.13 -0.41 6.30 -52.49 -0.33 -0.74 16 33 H 0.09 -0.39 7.65 -51.93 -0.40 -0.79 16 34 H 0.10 -0.35 7.67 -51.93 -0.40 -0.75 16 35 H 0.40 -2.42 8.73 -40.82 -0.36 -2.78 16 36 H 0.09 -0.30 8.07 -51.93 -0.42 -0.72 16 37 H 0.09 -0.23 8.14 -51.93 -0.42 -0.65 16 38 H 0.17 -0.02 8.06 -52.48 -0.42 -0.44 16 39 H 0.18 -0.66 8.06 -52.48 -0.42 -1.08 16 40 H 0.42 -1.81 7.53 -40.82 -0.31 -2.12 16 41 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 42 H 0.08 -0.35 6.64 -51.93 -0.34 -0.70 16 43 H 0.13 0.46 8.06 -52.48 -0.42 0.03 16 LS Contribution 363.22 15.07 5.47 5.47 Total: 0.00 -12.78 363.22 -11.20 -23.97 By element: Atomic # 1 Polarization: -9.38 SS G_CDS: -5.37 Total: -14.74 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -4.71 Total: -3.86 kcal Atomic # 7 Polarization: 1.08 SS G_CDS: -0.47 Total: 0.62 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -1.06 Total: -5.77 kcal Atomic # 14 Polarization: -0.63 SS G_CDS: -5.06 Total: -5.69 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -12.78 -11.20 -23.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.960 kcal (2) G-P(sol) polarization free energy of solvation -12.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds