Wall clock time and date at job start Tue Mar 9 2021 13:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47079 * 2 1 4 4 C 1.50691 * 109.47131 * 240.00144 * 2 1 3 5 5 C 1.38244 * 119.97675 * 119.97914 * 4 2 1 6 6 C 1.38284 * 120.11382 * 180.02562 * 5 4 2 7 7 C 1.38130 * 120.05701 * 359.67925 * 6 5 4 8 8 C 1.38750 * 119.94035 * 0.59834 * 7 6 5 9 9 O 1.35898 * 120.05837 * 179.70178 * 8 7 6 10 10 C 1.42908 * 116.99622 * 359.71978 * 9 8 7 11 11 C 1.50700 * 109.46813 * 180.02562 * 10 9 8 12 12 O 1.21275 * 120.00497 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99279 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99464 * 180.02562 * 13 11 10 15 15 H 1.08997 * 112.85272 * 23.79506 * 14 13 11 16 16 C 1.53783 * 113.61579 * 154.99914 * 14 13 11 17 17 C 1.53782 * 87.07940 * 139.97592 * 16 14 13 18 18 H 1.08997 * 113.61229 * 89.20487 * 17 16 14 19 19 C 1.50704 * 113.61362 * 220.01870 * 17 16 14 20 20 N 1.30504 * 125.64940 * 265.02906 * 19 17 16 21 21 C 1.34120 * 109.25474 * 179.73737 * 20 19 17 22 22 C 1.34663 * 108.02403 * 359.97438 * 21 20 19 23 23 N 1.35042 * 125.65148 * 84.72260 * 19 17 16 24 24 C 1.53775 * 87.08603 * 334.56907 * 17 16 14 25 25 C 1.38167 * 119.96929 * 299.99960 * 4 2 1 26 26 H 0.96705 * 114.00054 * 300.00396 * 1 2 3 27 27 H 1.09000 * 109.46586 * 119.99426 * 2 1 3 28 28 H 1.48501 * 110.00247 * 299.99919 * 3 2 1 29 29 H 1.48504 * 110.00102 * 61.31874 * 3 2 1 30 30 H 1.07999 * 119.94133 * 0.02562 * 5 4 2 31 31 H 1.08004 * 119.97411 * 179.97438 * 6 5 4 32 32 H 1.07996 * 120.03149 * 180.31983 * 7 6 5 33 33 H 1.08999 * 109.46761 * 60.00334 * 10 9 8 34 34 H 1.08996 * 109.47329 * 300.00362 * 10 9 8 35 35 H 0.96993 * 120.00589 * 359.97438 * 13 11 10 36 36 H 1.08998 * 113.61106 * 25.43100 * 16 14 13 37 37 H 1.08991 * 113.68942 * 254.53783 * 16 14 13 38 38 H 1.08010 * 125.99023 * 180.02562 * 21 20 19 39 39 H 1.08005 * 126.59404 * 180.02562 * 22 21 20 40 40 H 0.96999 * 126.39641 * 0.25473 * 23 19 17 41 41 H 1.08992 * 113.62117 * 139.98189 * 24 17 16 42 42 H 1.09006 * 113.61193 * 270.88609 * 24 17 16 43 43 H 1.08003 * 120.03413 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2304 5 6 2.7257 -0.0379 -2.1403 6 6 3.1878 -0.6868 -3.2706 7 6 2.8619 -2.0111 -3.4899 8 6 2.0600 -2.6866 -2.5812 9 8 1.7330 -3.9877 -2.7977 10 6 2.2447 -4.5963 -3.9851 11 6 1.7811 -6.0285 -4.0553 12 8 1.0811 -6.4832 -3.1756 13 7 2.1446 -6.8041 -5.0960 14 6 1.6934 -8.1963 -5.1646 15 1 0.7828 -8.3748 -4.5927 16 6 1.6424 -8.7575 -6.5954 17 6 2.2014 -10.0682 -6.0170 18 1 1.4302 -10.7603 -5.6792 19 6 3.2324 -10.7255 -6.8980 20 7 2.9981 -11.6669 -7.7709 21 6 4.1468 -12.0064 -8.3743 22 6 5.1302 -11.2463 -7.8561 23 7 4.5508 -10.4339 -6.9191 24 6 2.8077 -9.2193 -4.8872 25 6 1.5972 -2.0331 -1.4484 26 1 -0.3933 0.4418 0.7651 27 1 1.7922 -0.5138 0.8901 28 1 1.5615 2.4680 -1.2085 29 1 1.5879 2.4586 1.2242 30 1 2.9859 0.9961 -1.9680 31 1 3.8079 -0.1592 -3.9802 32 1 3.2273 -2.5190 -4.3702 33 1 3.3342 -4.5671 -3.9677 34 1 1.8806 -4.0537 -4.8574 35 1 2.7042 -6.4404 -5.7998 36 1 2.3238 -8.2587 -7.2846 37 1 0.6320 -8.8517 -6.9931 38 1 4.2627 -12.7573 -9.1420 39 1 6.1753 -11.2727 -8.1274 40 1 5.0027 -9.7719 -6.3727 41 1 2.7375 -9.6857 -3.9047 42 1 3.8077 -8.8467 -5.1095 43 1 0.9759 -2.5580 -0.7378 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14772358_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:35 Heat of formation + Delta-G solvation = 16.932830 kcal Electronic energy + Delta-G solvation = -26392.198628 eV Core-core repulsion = 22406.528025 eV Total energy + Delta-G solvation = -3985.670603 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.10137 -41.60338 -40.87929 -39.51337 -38.72226 -37.41423 -34.83801 -33.45848 -32.59793 -31.74885 -30.69348 -29.25200 -26.87050 -26.83144 -25.86704 -23.65514 -22.91283 -22.46454 -21.69739 -21.54792 -20.72876 -19.25861 -18.95996 -18.59540 -18.19895 -17.50989 -17.42504 -17.11814 -16.71075 -16.47077 -15.83902 -15.77886 -15.69756 -15.56749 -15.04569 -14.90563 -14.62456 -14.53916 -14.14940 -14.03445 -13.79184 -13.69718 -13.55921 -13.43419 -13.27154 -12.55089 -12.49415 -12.15348 -12.04117 -12.01811 -11.75283 -11.71764 -11.04387 -11.02418 -10.99902 -10.58714 -10.20887 -9.89255 -9.34832 -9.28381 -4.92570 0.20398 0.39205 1.08824 1.26367 1.39409 1.47658 1.61787 1.94957 2.12528 2.19758 2.57531 2.63814 3.26135 3.35490 3.36654 3.54192 3.57179 3.75450 3.78439 3.83933 3.96129 4.01142 4.08521 4.13579 4.25567 4.26675 4.27398 4.48325 4.49924 4.55450 4.58052 4.63813 4.65356 4.77390 4.84413 4.96304 4.97801 5.05314 5.16782 5.23387 5.36493 5.42519 5.46664 5.68460 5.79064 6.26502 6.44576 6.49561 6.54904 7.09200 7.14309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.098 4.098 3 Si 0.782 3.218 4 C -0.048 4.048 5 C -0.160 4.160 6 C -0.070 4.070 7 C -0.202 4.202 8 C 0.114 3.886 9 O -0.323 6.323 10 C 0.036 3.964 11 C 0.514 3.486 12 O -0.572 6.572 13 N -0.697 5.697 14 C 0.125 3.875 15 H 0.102 0.898 16 C -0.119 4.119 17 C -0.025 4.025 18 H 0.116 0.884 19 C 0.212 3.788 20 N -0.533 5.533 21 C -0.065 4.065 22 C -0.041 4.041 23 N -0.554 5.554 24 C -0.138 4.138 25 C -0.151 4.151 26 H 0.395 0.605 27 H 0.091 0.909 28 H -0.295 1.295 29 H -0.287 1.287 30 H 0.147 0.853 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.422 0.578 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.176 0.824 39 H 0.211 0.789 40 H 0.432 0.568 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.952 4.459 -3.158 11.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.205 4.205 3 Si 0.686 3.314 4 C -0.048 4.048 5 C -0.177 4.177 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.069 3.931 9 O -0.236 6.236 10 C -0.042 4.042 11 C 0.301 3.699 12 O -0.450 6.450 13 N -0.351 5.351 14 C 0.020 3.980 15 H 0.120 0.880 16 C -0.158 4.158 17 C -0.045 4.045 18 H 0.134 0.866 19 C -0.053 4.053 20 N -0.254 5.254 21 C -0.212 4.212 22 C -0.175 4.175 23 N -0.159 5.159 24 C -0.178 4.178 25 C -0.170 4.170 26 H 0.245 0.755 27 H 0.109 0.891 28 H -0.222 1.222 29 H -0.215 1.215 30 H 0.164 0.836 31 H 0.183 0.817 32 H 0.182 0.818 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.261 0.739 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.193 0.807 39 H 0.227 0.773 40 H 0.273 0.727 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.455 4.123 -3.157 9.922 hybrid contribution -0.297 0.093 0.598 0.674 sum 8.158 4.216 -2.559 9.533 Atomic orbital electron populations 1.86557 1.18690 1.80876 1.50969 1.25254 0.84076 1.12845 0.98375 0.93994 0.90014 0.70902 0.76462 1.19280 0.97032 0.92650 0.95886 1.21174 1.00621 1.00718 0.95222 1.21329 0.97391 0.93554 0.96499 1.21638 1.02358 0.96810 1.01236 1.19165 0.95734 0.82984 0.95235 1.86122 1.71440 1.23179 1.42905 1.22767 1.02159 0.90590 0.88661 1.20579 0.79593 0.87927 0.81828 1.90773 1.38748 1.75494 1.39946 1.45614 1.53341 1.11624 1.24496 1.22387 0.98332 0.79387 0.97861 0.87952 1.23362 1.03339 0.93522 0.95585 1.20763 0.94807 0.95249 0.93726 0.86569 1.23086 0.84519 0.97646 1.00037 1.70178 1.29937 1.14499 1.10746 1.22745 0.88736 1.04773 1.04911 1.23283 1.01407 0.96900 0.95916 1.43222 1.08232 1.32323 1.32165 1.23539 0.99591 0.95825 0.98826 1.20293 1.03766 0.94996 0.97924 0.75482 0.89141 1.22214 1.21470 0.83585 0.81728 0.81843 0.85260 0.85882 0.73949 0.87874 0.89638 0.80681 0.77258 0.72683 0.90265 0.87863 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.97 12.74 -148.98 -1.90 -4.87 16 2 C -0.10 -0.17 2.81 71.23 0.20 0.03 16 3 Si 0.78 -1.48 29.79 68.60 2.04 0.56 16 4 C -0.05 -0.21 5.42 -19.88 -0.11 -0.32 16 5 C -0.16 0.02 8.67 22.28 0.19 0.22 16 6 C -0.07 0.23 10.04 22.25 0.22 0.46 16 7 C -0.20 0.46 9.04 22.37 0.20 0.67 16 8 C 0.11 0.57 6.69 22.51 0.15 0.72 16 9 O -0.32 -2.24 9.67 -73.37 -0.71 -2.95 16 10 C 0.04 -0.14 5.22 71.24 0.37 0.23 16 11 C 0.51 0.70 7.91 87.66 0.69 1.39 16 12 O -0.57 -7.79 16.10 16.02 0.26 -7.53 16 13 N -0.70 4.64 5.36 -440.02 -2.36 2.28 16 14 C 0.13 -0.53 4.24 45.52 0.19 -0.34 16 15 H 0.10 0.11 7.46 -2.39 -0.02 0.10 16 16 C -0.12 0.70 7.38 31.12 0.23 0.93 16 17 C -0.02 0.07 4.29 -11.01 -0.05 0.02 16 18 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 19 C 0.21 0.31 7.36 138.13 1.02 1.33 16 20 N -0.53 -4.44 11.25 -188.13 -2.12 -6.55 16 21 C -0.06 -0.26 11.87 83.52 0.99 0.73 16 22 C -0.04 0.11 12.04 83.09 1.00 1.11 16 23 N -0.55 2.35 5.94 -186.27 -1.11 1.24 16 24 C -0.14 0.85 7.35 31.12 0.23 1.08 16 25 C -0.15 -1.22 9.55 22.37 0.21 -1.00 16 26 H 0.39 -1.25 8.74 -74.05 -0.65 -1.90 16 27 H 0.09 -0.13 7.96 -2.39 -0.02 -0.15 16 28 H -0.29 -1.39 7.11 99.48 0.71 -0.68 16 29 H -0.29 -0.66 7.11 99.48 0.71 0.05 16 30 H 0.15 -0.65 4.87 -2.91 -0.01 -0.67 16 31 H 0.17 -1.66 8.06 -2.91 -0.02 -1.68 16 32 H 0.16 -1.65 6.30 -2.91 -0.02 -1.67 16 33 H 0.13 -1.45 7.65 -2.39 -0.02 -1.47 16 34 H 0.12 -1.21 7.67 -2.39 -0.02 -1.23 16 35 H 0.42 -6.13 8.73 -92.71 -0.81 -6.94 16 36 H 0.10 -0.89 8.07 -2.39 -0.02 -0.91 16 37 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.18 0.16 8.06 -2.91 -0.02 0.14 16 39 H 0.21 -2.10 8.06 -2.91 -0.02 -2.13 16 40 H 0.43 -4.77 7.53 -92.71 -0.70 -5.47 16 41 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.10 -1.11 6.64 -2.38 -0.02 -1.13 16 43 H 0.11 1.23 8.06 -2.91 -0.02 1.21 16 Total: 0.00 -34.78 363.22 -1.17 -35.95 By element: Atomic # 1 Polarization: -24.35 SS G_CDS: -1.03 Total: -25.38 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.75 Total: 7.25 kcal Atomic # 7 Polarization: 2.55 SS G_CDS: -5.58 Total: -3.03 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -2.35 Total: -15.35 kcal Atomic # 14 Polarization: -1.48 SS G_CDS: 2.04 Total: 0.56 kcal Total: -34.78 -1.17 -35.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14772358_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.882 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds