Wall clock time and date at job start Tue Mar 9 2021 13:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 O 1.42094 * 108.57886 * 2 1 4 4 O 1.42095 * 108.57471 * 228.97453 * 2 1 3 5 5 C 1.81405 * 101.92009 * 114.48899 * 2 1 3 6 6 H 1.08995 * 109.47313 * 64.99969 * 5 2 1 7 7 C 1.53003 * 109.46708 * 184.99786 * 5 2 1 8 8 C 1.52998 * 109.46655 * 179.97438 * 7 5 2 9 9 C 1.52998 * 109.47576 * 300.00072 * 8 7 5 10 10 H 1.09002 * 109.47331 * 180.02562 * 9 8 7 11 11 N 1.46505 * 109.47007 * 299.99981 * 9 8 7 12 12 C 1.34770 * 120.00089 * 204.99887 * 11 9 8 13 13 O 1.21277 * 119.99912 * 359.97438 * 12 11 9 14 14 C 1.50695 * 119.99994 * 180.02562 * 12 11 9 15 15 C 1.50707 * 109.47388 * 179.97438 * 14 12 11 16 16 C 1.38228 * 119.99963 * 89.99756 * 15 14 12 17 17 C 1.38234 * 119.99994 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00175 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00438 * 180.02562 * 18 17 16 20 20 O 1.42905 * 109.46996 * 64.99275 * 19 18 17 21 21 Si 1.86301 * 109.47403 * 184.99539 * 19 18 17 22 22 C 1.38238 * 119.99500 * 0.27021 * 18 17 16 23 23 C 1.38232 * 120.00122 * 359.51943 * 22 18 17 24 24 C 1.52996 * 109.47345 * 60.00011 * 9 8 7 25 25 C 1.52996 * 109.46965 * 304.99789 * 5 2 1 26 26 H 1.09002 * 109.46459 * 305.51296 * 1 2 3 27 27 H 1.08998 * 109.47131 * 65.51056 * 1 2 3 28 28 H 1.08994 * 109.47020 * 185.51429 * 1 2 3 29 29 H 1.08995 * 109.47084 * 60.00043 * 7 5 2 30 30 H 1.08995 * 109.46996 * 300.00119 * 7 5 2 31 31 H 1.09004 * 109.47156 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.47123 * 60.00332 * 8 7 5 33 33 H 0.96998 * 119.99743 * 25.00129 * 11 9 8 34 34 H 1.09007 * 109.47401 * 60.00040 * 14 12 11 35 35 H 1.08997 * 109.47471 * 299.99950 * 14 12 11 36 36 H 1.08003 * 120.00447 * 359.97438 * 16 15 14 37 37 H 1.08002 * 120.00197 * 179.97438 * 17 16 15 38 38 H 1.09001 * 109.46613 * 304.99687 * 19 18 17 39 39 H 0.96696 * 114.00036 * 60.00342 * 20 19 18 40 40 H 1.48497 * 109.99842 * 179.97438 * 21 19 18 41 41 H 1.48498 * 109.99736 * 301.31722 * 21 19 18 42 42 H 1.08000 * 119.99674 * 179.73054 * 22 18 17 43 43 H 1.08004 * 120.00053 * 180.27690 * 23 22 18 44 44 H 1.09004 * 109.47008 * 60.00042 * 24 9 8 45 45 H 1.08993 * 109.47467 * 180.02562 * 24 9 8 46 46 H 1.09004 * 109.47178 * 300.00016 * 25 5 2 47 47 H 1.08999 * 109.47468 * 60.00325 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6153 6 1 1.8389 -1.7678 1.6344 7 6 3.7002 -0.7051 1.8513 8 6 4.0161 -1.3251 3.2139 9 6 3.3120 -0.5270 4.3130 10 1 3.5375 -0.9684 5.2838 11 7 3.7825 0.8602 4.2868 12 6 3.7232 1.6131 5.4030 13 8 3.2800 1.1424 6.4291 14 6 4.2066 3.0402 5.3759 15 6 4.0319 3.6558 6.7403 16 6 5.0497 3.5721 7.6718 17 6 4.8897 4.1372 8.9232 18 6 3.7120 4.7867 9.2428 19 6 3.5377 5.4033 10.6068 20 8 4.4711 6.4733 10.7685 21 14 1.8030 6.0618 10.7736 22 6 2.6922 4.8660 8.3130 23 6 2.8539 4.3046 7.0602 24 6 1.8007 -0.5575 4.0770 25 6 1.4846 0.0619 2.7146 26 1 -0.3632 0.5970 0.8366 27 1 -0.3633 0.4260 -0.9352 28 1 -0.3633 -1.0229 0.0987 29 1 4.0501 0.3269 1.8321 30 1 4.2018 -1.2734 1.0680 31 1 5.0929 -1.3037 3.3819 32 1 3.6662 -2.3572 3.2334 33 1 4.1366 1.2368 3.4660 34 1 3.6280 3.6060 4.6456 35 1 5.2607 3.0616 5.0995 36 1 5.9701 3.0651 7.4220 37 1 5.6848 4.0714 9.6511 38 1 3.7148 4.6478 11.3723 39 1 4.3718 7.1833 10.1197 40 1 1.6182 6.6720 12.1147 41 1 1.5384 7.0697 9.7156 42 1 1.7704 5.3696 8.5642 43 1 2.0589 4.3705 6.3321 44 1 1.4507 -1.5896 4.0965 45 1 1.2991 0.0114 4.8598 46 1 1.8346 1.0941 2.6955 47 1 0.4079 0.0402 2.5465 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14783808_12335836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:57 Heat of formation + Delta-G solvation = -113.542908 kcal Electronic energy + Delta-G solvation = -29561.057728 eV Core-core repulsion = 25416.428191 eV Total energy + Delta-G solvation = -4144.629537 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.49968 -40.52341 -39.19048 -38.06477 -37.66746 -37.10824 -34.96647 -34.06324 -32.42707 -31.91288 -31.54643 -30.44985 -29.42472 -25.84110 -24.28685 -24.07684 -23.78732 -22.59892 -21.48856 -20.50871 -19.89661 -18.54988 -18.35436 -18.13729 -17.47517 -17.16742 -17.01664 -16.87480 -16.51222 -16.28781 -16.10766 -15.99902 -15.66265 -15.23103 -14.94539 -14.86998 -14.71165 -14.46299 -14.34684 -14.20778 -14.02577 -13.94695 -13.68154 -13.49676 -13.21288 -13.18733 -13.13602 -13.06953 -12.85197 -12.69527 -12.50060 -12.22488 -12.14199 -12.05407 -11.94461 -11.69040 -11.53586 -11.08001 -10.88415 -10.53520 -10.12899 -9.82613 -9.59791 -4.91640 -1.15475 0.27591 0.50472 1.32633 1.57454 1.62085 1.64705 1.98543 2.09884 2.48135 2.79755 2.80572 3.13834 3.22295 3.41848 3.52692 3.59260 3.65183 3.69308 3.77471 3.80843 3.85620 3.86743 3.91915 3.98396 4.05380 4.10931 4.16782 4.24351 4.26048 4.40293 4.44432 4.49743 4.51882 4.59908 4.64466 4.71925 4.76928 4.79763 4.82804 4.90751 5.00507 5.03212 5.10490 5.40889 5.43581 5.58188 5.61762 6.03471 6.43089 6.44084 7.21646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.416 3.584 3 O -0.936 6.936 4 O -0.938 6.938 5 C -0.571 4.571 6 H 0.142 0.858 7 C -0.108 4.108 8 C -0.119 4.119 9 C 0.144 3.856 10 H 0.094 0.906 11 N -0.729 5.729 12 C 0.516 3.484 13 O -0.526 6.526 14 C -0.107 4.107 15 C -0.061 4.061 16 C -0.104 4.104 17 C -0.090 4.090 18 C -0.117 4.117 19 C -0.075 4.075 20 O -0.530 6.530 21 Si 0.686 3.314 22 C -0.116 4.116 23 C -0.100 4.100 24 C -0.123 4.123 25 C -0.110 4.110 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.401 0.599 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.375 0.625 40 H -0.258 1.258 41 H -0.260 1.260 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -2.367 -1.952 4.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.599 3.401 3 O -0.933 6.933 4 O -0.935 6.935 5 C -0.680 4.680 6 H 0.160 0.840 7 C -0.146 4.146 8 C -0.158 4.158 9 C 0.039 3.961 10 H 0.112 0.888 11 N -0.384 5.384 12 C 0.302 3.698 13 O -0.401 6.401 14 C -0.146 4.146 15 C -0.062 4.062 16 C -0.122 4.122 17 C -0.108 4.108 18 C -0.117 4.117 19 C -0.185 4.185 20 O -0.336 6.336 21 Si 0.588 3.412 22 C -0.134 4.134 23 C -0.118 4.118 24 C -0.163 4.163 25 C -0.148 4.148 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.236 0.764 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.223 0.777 40 H -0.183 1.183 41 H -0.185 1.185 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.649 -2.082 -1.255 3.595 hybrid contribution 0.334 0.511 -0.390 0.725 sum -2.315 -1.571 -1.645 3.245 Atomic orbital electron populations 1.30300 1.26579 1.11790 1.12052 1.08088 0.78548 0.75982 0.77445 1.93596 1.79038 1.34270 1.86379 1.93620 1.79130 1.67063 1.53736 1.30254 1.05368 1.12761 1.19613 0.84034 1.21355 0.90481 1.03021 0.99764 1.21766 1.01378 1.00023 0.92631 1.20949 0.93359 0.81656 1.00093 0.88763 1.46194 1.65663 1.13291 1.13204 1.20552 0.78233 0.87753 0.83260 1.90754 1.44731 1.73393 1.31200 1.20722 1.04238 0.93052 0.96626 1.19262 0.94587 0.97805 0.94509 1.21013 0.98743 0.99092 0.93357 1.20964 0.96981 0.96451 0.96437 1.20246 0.95118 1.00228 0.96133 1.25025 1.04823 0.92329 0.96344 1.86602 1.56355 1.32648 1.58010 0.94870 0.79353 0.87013 0.79993 1.20978 0.98176 1.00518 0.93710 1.20897 0.96709 0.97634 0.96579 1.21845 0.96135 1.02069 0.96219 1.21470 0.99827 0.99588 0.93949 0.85080 0.85065 0.85173 0.90262 0.89543 0.90184 0.89602 0.76378 0.87611 0.87716 0.86020 0.85686 0.86478 0.77725 1.18289 1.18541 0.85643 0.85839 0.90383 0.90377 0.89803 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.11 10.01 101.05 1.01 4.12 16 2 S 2.42 -5.06 4.90 -107.50 -0.53 -5.59 16 3 O -0.94 -1.18 18.06 -57.83 -1.04 -2.23 16 4 O -0.94 -2.02 18.10 -57.83 -1.05 -3.07 16 5 C -0.57 2.50 2.62 -26.73 -0.07 2.43 16 6 H 0.14 -0.90 8.14 -51.93 -0.42 -1.32 16 7 C -0.11 0.41 5.03 -26.73 -0.13 0.27 16 8 C -0.12 0.47 5.61 -26.73 -0.15 0.32 16 9 C 0.14 -0.36 2.78 -67.93 -0.19 -0.55 16 10 H 0.09 -0.06 7.58 -51.93 -0.39 -0.45 16 11 N -0.73 1.81 4.23 -53.81 -0.23 1.59 16 12 C 0.52 -0.04 7.79 -10.99 -0.09 -0.12 16 13 O -0.53 -2.13 15.70 5.56 0.09 -2.04 16 14 C -0.11 0.20 5.83 -29.03 -0.17 0.03 16 15 C -0.06 -0.04 4.37 -104.62 -0.46 -0.49 16 16 C -0.10 -0.12 9.70 -39.59 -0.38 -0.50 16 17 C -0.09 -0.15 9.69 -39.58 -0.38 -0.53 16 18 C -0.12 -0.15 5.35 -104.63 -0.56 -0.71 16 19 C -0.08 -0.05 2.80 36.00 0.10 0.05 16 20 O -0.53 -1.03 12.83 -35.23 -0.45 -1.48 16 21 Si 0.69 -0.11 29.88 -169.99 -5.08 -5.19 16 22 C -0.12 -0.09 8.67 -39.58 -0.34 -0.43 16 23 C -0.10 -0.06 9.70 -39.59 -0.38 -0.45 16 24 C -0.12 0.38 5.60 -26.75 -0.15 0.23 16 25 C -0.11 0.48 4.75 -26.75 -0.13 0.35 16 26 H 0.13 -0.83 6.77 -51.92 -0.35 -1.18 16 27 H 0.13 -0.60 8.14 -51.92 -0.42 -1.02 16 28 H 0.13 -0.83 8.14 -51.93 -0.42 -1.25 16 29 H 0.08 -0.33 6.50 -51.93 -0.34 -0.67 16 30 H 0.09 -0.33 8.14 -51.93 -0.42 -0.75 16 31 H 0.08 -0.32 8.14 -51.93 -0.42 -0.75 16 32 H 0.09 -0.39 8.14 -51.93 -0.42 -0.81 16 33 H 0.40 -1.75 6.87 -40.82 -0.28 -2.03 16 34 H 0.11 -0.40 8.09 -51.92 -0.42 -0.82 16 35 H 0.10 -0.39 8.09 -51.93 -0.42 -0.81 16 36 H 0.12 -0.04 8.06 -52.48 -0.42 -0.46 16 37 H 0.13 0.13 8.06 -52.49 -0.42 -0.29 16 38 H 0.12 0.03 7.96 -51.93 -0.41 -0.39 16 39 H 0.38 -0.35 8.70 45.56 0.40 0.04 16 40 H -0.26 -0.78 7.11 56.52 0.40 -0.38 16 41 H -0.26 -0.39 7.01 56.52 0.40 0.01 16 42 H 0.13 -0.11 4.85 -52.49 -0.25 -0.36 16 43 H 0.12 -0.14 8.06 -52.48 -0.42 -0.56 16 44 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 45 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 46 H 0.08 -0.33 7.60 -51.93 -0.39 -0.73 16 47 H 0.08 -0.49 6.39 -51.93 -0.33 -0.82 16 LS Contribution 386.83 15.07 5.83 5.83 Total: 0.00 -13.21 386.83 -11.99 -25.20 By element: Atomic # 1 Polarization: -9.99 SS G_CDS: -7.05 Total: -17.04 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -2.47 Total: 4.02 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -0.23 Total: 1.59 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -2.46 Total: -8.82 kcal Atomic # 14 Polarization: -0.11 SS G_CDS: -5.08 Total: -5.19 kcal Atomic # 16 Polarization: -5.06 SS G_CDS: -0.53 Total: -5.59 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -13.21 -11.99 -25.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_12335836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.341 kcal (2) G-P(sol) polarization free energy of solvation -13.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds