Wall clock time and date at job start Tue Mar 9 2021 13:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42099 * 108.57494 * 2 1 4 4 O 1.42093 * 108.57831 * 131.02445 * 2 1 3 5 5 C 1.81393 * 101.92151 * 245.51493 * 2 1 3 6 6 H 1.09005 * 109.47147 * 299.99853 * 5 2 1 7 7 C 1.53002 * 109.47399 * 59.99813 * 5 2 1 8 8 C 1.52998 * 109.47615 * 180.02562 * 7 5 2 9 9 C 1.53007 * 109.46888 * 300.00275 * 8 7 5 10 10 H 1.08996 * 109.46857 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46995 * 299.99417 * 9 8 7 12 12 C 1.34768 * 120.00159 * 275.00235 * 11 9 8 13 13 O 1.21569 * 120.00168 * 359.97438 * 12 11 9 14 14 C 1.47725 * 119.99819 * 180.02562 * 12 11 9 15 15 C 1.39637 * 120.11724 * 179.72453 * 14 12 11 16 16 C 1.37860 * 119.87873 * 179.67226 * 15 14 12 17 17 C 1.50696 * 119.93968 * 180.33864 * 16 15 14 18 18 O 1.42895 * 109.47598 * 255.28031 * 17 16 15 19 19 Si 1.86303 * 109.46919 * 135.28172 * 17 16 15 20 20 C 1.38634 * 120.11860 * 0.62793 * 16 15 14 21 21 F 1.35098 * 119.88154 * 179.69797 * 20 16 15 22 22 C 1.38680 * 120.23542 * 359.66762 * 20 16 15 23 23 C 1.37812 * 120.12366 * 0.02562 * 22 20 16 24 24 C 1.52996 * 109.47043 * 59.99959 * 9 8 7 25 25 C 1.53002 * 109.47122 * 299.99476 * 24 9 8 26 26 H 1.09002 * 109.47124 * 174.48534 * 1 2 3 27 27 H 1.09001 * 109.46975 * 54.48655 * 1 2 3 28 28 H 1.09004 * 109.47147 * 294.48618 * 1 2 3 29 29 H 1.08997 * 109.47169 * 300.00212 * 7 5 2 30 30 H 1.09005 * 109.46938 * 59.99912 * 7 5 2 31 31 H 1.08998 * 109.47678 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47058 * 59.99963 * 8 7 5 33 33 H 0.97005 * 119.99447 * 95.00130 * 11 9 8 34 34 H 1.07997 * 120.05849 * 359.97438 * 15 14 12 35 35 H 1.09001 * 109.47140 * 15.28456 * 17 16 15 36 36 H 0.96700 * 114.00168 * 300.00957 * 18 17 16 37 37 H 1.48502 * 109.99806 * 58.68374 * 19 17 16 38 38 H 1.48500 * 110.00235 * 179.97438 * 19 17 16 39 39 H 1.08001 * 119.93536 * 180.02562 * 22 20 16 40 40 H 1.08000 * 120.06476 * 180.02562 * 23 22 20 41 41 H 1.08997 * 109.46995 * 179.97438 * 24 9 8 42 42 H 1.08995 * 109.47405 * 59.99954 * 24 9 8 43 43 H 1.08995 * 109.47371 * 300.00499 * 25 24 9 44 44 H 1.08998 * 109.47487 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 1.0161 5 6 2.1887 -0.7356 -1.6152 6 1 1.7611 -1.7369 -1.6665 7 6 1.5884 0.1327 -2.7227 8 6 1.9039 -0.4880 -4.0851 9 6 3.4206 -0.5719 -4.2684 10 1 3.6453 -1.0145 -5.2387 11 7 3.9958 0.7737 -4.1999 12 6 4.0350 1.5468 -5.3032 13 8 3.5935 1.1273 -6.3553 14 6 4.6156 2.9034 -5.2342 15 6 4.6627 3.7043 -6.3771 16 6 5.1995 4.9721 -6.3056 17 6 5.2440 5.8404 -7.5364 18 8 6.5804 5.8842 -8.0405 19 14 4.6880 7.5643 -7.1006 20 6 5.7037 5.4474 -5.1048 21 9 6.2342 6.6882 -5.0417 22 6 5.6650 4.6538 -3.9682 23 6 5.1249 3.3872 -4.0270 24 6 4.0209 -1.4402 -3.1609 25 6 3.7054 -0.8194 -1.7986 26 1 -0.3633 -1.0229 -0.0988 27 1 -0.3633 0.5970 -0.8365 28 1 -0.3634 0.4260 0.9353 29 1 0.5079 0.1921 -2.5924 30 1 2.0161 1.1340 -2.6715 31 1 1.4766 0.1307 -4.8741 32 1 1.4758 -1.4892 -4.1361 33 1 4.3485 1.1082 -3.3604 34 1 4.2749 3.3330 -7.3142 35 1 4.5821 5.4266 -8.2972 36 1 7.2252 6.2423 -7.4150 37 1 5.5632 8.1277 -6.0414 38 1 4.7280 8.4309 -8.3059 39 1 6.0588 5.0291 -3.0352 40 1 5.0949 2.7702 -3.1412 41 1 5.1013 -1.5003 -3.2918 42 1 3.5929 -2.4413 -3.2119 43 1 4.1334 0.1817 -1.7476 44 1 4.1335 -1.4377 -1.0096 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_12496548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:01 Heat of formation + Delta-G solvation = -146.625921 kcal Electronic energy + Delta-G solvation = -30633.677295 eV Core-core repulsion = 26173.696815 eV Total energy + Delta-G solvation = -4459.980480 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.113 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.48623 -41.65137 -40.20348 -38.96222 -37.98406 -37.80704 -37.01879 -35.06518 -33.03702 -32.22795 -32.06750 -30.74942 -30.04098 -27.01833 -25.32277 -23.87407 -23.77548 -23.53980 -21.80397 -20.40948 -19.70445 -19.35772 -18.88752 -18.08581 -17.96503 -17.86810 -17.20360 -17.04375 -16.91238 -16.65218 -16.35817 -16.22734 -15.76559 -15.58329 -15.25253 -15.04850 -15.00381 -14.66779 -14.63429 -14.06775 -13.97435 -13.89197 -13.86865 -13.76776 -13.44096 -13.33113 -13.22858 -13.06600 -13.00983 -12.98405 -12.53760 -12.36527 -12.18909 -11.93658 -11.72774 -11.43483 -11.35740 -11.18572 -10.86950 -10.83650 -10.21510 -10.12737 -9.82426 -4.97641 -0.91278 -0.52801 0.00510 1.19270 1.56505 1.59194 1.86062 1.93362 2.06823 2.55605 2.73634 2.95339 3.05852 3.22154 3.43804 3.45416 3.52335 3.56199 3.60472 3.83499 3.94998 3.95461 4.08290 4.10064 4.11119 4.21336 4.27474 4.32276 4.42665 4.48875 4.56650 4.61322 4.75035 4.76359 4.88643 4.91277 4.96020 4.99935 5.03356 5.08310 5.10295 5.13942 5.18408 5.26346 5.49208 5.58681 6.29676 6.42862 7.11349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.413 3.587 3 O -0.977 6.977 4 O -0.989 6.989 5 C -0.553 4.553 6 H 0.172 0.828 7 C -0.115 4.115 8 C -0.121 4.121 9 C 0.138 3.862 10 H 0.079 0.921 11 N -0.709 5.709 12 C 0.562 3.438 13 O -0.571 6.571 14 C -0.153 4.153 15 C -0.019 4.019 16 C -0.154 4.154 17 C -0.082 4.082 18 O -0.543 6.543 19 Si 0.749 3.251 20 C 0.109 3.891 21 F -0.130 7.130 22 C -0.148 4.148 23 C -0.045 4.045 24 C -0.112 4.112 25 C -0.119 4.119 26 H 0.153 0.847 27 H 0.152 0.848 28 H 0.130 0.870 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.410 0.590 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.383 0.617 37 H -0.254 1.254 38 H -0.306 1.306 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.610 -3.545 3.330 6.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.602 3.398 3 O -0.975 6.975 4 O -0.986 6.986 5 C -0.664 4.664 6 H 0.189 0.811 7 C -0.153 4.153 8 C -0.160 4.160 9 C 0.035 3.965 10 H 0.097 0.903 11 N -0.362 5.362 12 C 0.350 3.650 13 O -0.451 6.451 14 C -0.156 4.156 15 C -0.038 4.038 16 C -0.155 4.155 17 C -0.190 4.190 18 O -0.351 6.351 19 Si 0.653 3.347 20 C 0.090 3.910 21 F -0.109 7.109 22 C -0.167 4.167 23 C -0.063 4.063 24 C -0.151 4.151 25 C -0.157 4.157 26 H 0.171 0.829 27 H 0.170 0.830 28 H 0.149 0.851 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.248 0.752 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.232 0.768 37 H -0.180 1.180 38 H -0.234 1.234 39 H 0.185 0.815 40 H 0.183 0.817 41 H 0.100 0.900 42 H 0.120 0.880 43 H 0.096 0.904 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.381 -2.934 2.855 5.996 hybrid contribution 1.075 0.065 -0.307 1.120 sum -3.306 -2.869 2.548 5.065 Atomic orbital electron populations 1.30190 1.22932 1.13857 1.13074 1.07827 0.79723 0.74603 0.77635 1.93538 1.80633 1.36131 1.87162 1.93557 1.80907 1.67781 1.56333 1.30096 1.05438 1.13692 1.17188 0.81080 1.21550 1.02468 0.98379 0.92875 1.21833 0.94906 1.02949 0.96352 1.21113 0.93591 0.81643 1.00203 0.90295 1.46028 1.61869 1.16356 1.11921 1.18260 0.78049 0.84989 0.83695 1.90793 1.49032 1.74525 1.30757 1.20040 1.05109 0.95063 0.95417 1.21030 0.93506 0.90563 0.98676 1.20160 1.03706 0.96944 0.94729 1.25156 0.87556 1.09795 0.96513 1.86620 1.17462 1.86003 1.44992 0.94640 0.88862 0.72765 0.78467 1.18095 0.97213 0.80685 0.95051 1.91555 1.83990 1.38617 1.96714 1.21377 1.02340 0.94448 0.98504 1.21471 0.92802 0.94882 0.97155 1.21740 1.02126 0.99721 0.91485 1.21481 0.91012 1.03199 1.00025 0.82878 0.82969 0.85146 0.87730 0.90397 0.92192 0.88571 0.75156 0.83921 0.85013 0.76752 1.17962 1.23389 0.81456 0.81671 0.89956 0.88026 0.90400 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 7.72 10.17 113.37 1.15 8.87 16 2 S 2.41 -12.76 4.88 -56.49 -0.28 -13.03 16 3 O -0.98 -2.05 17.91 -127.37 -2.28 -4.33 16 4 O -0.99 -4.00 18.10 -127.37 -2.30 -6.30 16 5 C -0.55 6.13 2.58 30.60 0.08 6.21 16 6 H 0.17 -2.88 8.14 -2.39 -0.02 -2.89 16 7 C -0.11 1.21 4.79 30.59 0.15 1.36 16 8 C -0.12 0.92 5.60 30.60 0.17 1.09 16 9 C 0.14 -0.78 2.78 44.99 0.13 -0.66 16 10 H 0.08 -0.12 7.58 -2.39 -0.02 -0.14 16 11 N -0.71 3.20 4.18 -445.53 -1.86 1.34 16 12 C 0.56 1.03 7.73 86.75 0.67 1.70 16 13 O -0.57 -5.49 16.01 -3.93 -0.06 -5.56 16 14 C -0.15 0.04 5.87 -20.09 -0.12 -0.07 16 15 C -0.02 -0.03 9.21 22.52 0.21 0.18 16 16 C -0.15 -0.12 4.78 -19.86 -0.09 -0.21 16 17 C -0.08 -0.11 2.80 71.23 0.20 0.09 16 18 O -0.54 -2.68 12.88 -148.98 -1.92 -4.60 16 19 Si 0.75 0.56 30.81 68.60 2.11 2.67 16 20 C 0.11 -0.01 6.63 22.47 0.15 0.14 16 21 F -0.13 -0.30 12.57 44.97 0.57 0.27 16 22 C -0.15 0.58 10.01 22.27 0.22 0.80 16 23 C -0.04 0.22 9.54 22.52 0.21 0.44 16 24 C -0.11 1.09 5.61 30.59 0.17 1.26 16 25 C -0.12 1.10 5.04 30.60 0.15 1.25 16 26 H 0.15 -2.49 8.14 -2.39 -0.02 -2.50 16 27 H 0.15 -2.43 6.87 -2.39 -0.02 -2.45 16 28 H 0.13 -1.41 8.14 -2.39 -0.02 -1.43 16 29 H 0.10 -1.61 6.56 -2.39 -0.02 -1.63 16 30 H 0.08 -0.68 7.52 -2.38 -0.02 -0.69 16 31 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.10 -1.03 8.14 -2.38 -0.02 -1.05 16 33 H 0.41 -3.64 4.89 -92.70 -0.45 -4.10 16 34 H 0.14 0.36 7.59 -2.91 -0.02 0.34 16 35 H 0.13 -0.09 7.77 -2.39 -0.02 -0.11 16 36 H 0.38 0.02 8.41 -74.06 -0.62 -0.60 16 37 H -0.25 -1.12 5.27 99.48 0.52 -0.60 16 38 H -0.31 -2.53 7.11 99.48 0.71 -1.82 16 39 H 0.17 -1.35 8.06 -2.91 -0.02 -1.37 16 40 H 0.17 -1.84 6.40 -2.91 -0.02 -1.86 16 41 H 0.08 -0.79 8.14 -2.39 -0.02 -0.81 16 42 H 0.10 -1.22 8.14 -2.39 -0.02 -1.24 16 43 H 0.08 -0.77 6.50 -2.39 -0.02 -0.78 16 44 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 Total: 0.00 -31.12 366.14 -2.74 -33.86 By element: Atomic # 1 Polarization: -26.60 SS G_CDS: -0.17 Total: -26.76 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 3.45 Total: 22.45 kcal Atomic # 7 Polarization: 3.20 SS G_CDS: -1.86 Total: 1.34 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -6.57 Total: -20.79 kcal Atomic # 9 Polarization: -0.30 SS G_CDS: 0.57 Total: 0.27 kcal Atomic # 14 Polarization: 0.56 SS G_CDS: 2.11 Total: 2.67 kcal Atomic # 16 Polarization: -12.76 SS G_CDS: -0.28 Total: -13.03 kcal Total: -31.12 -2.74 -33.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_12496548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.763 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds