Wall clock time and date at job start Tue Mar 9 2021 13:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42095 * 108.58091 * 2 1 4 4 O 1.42099 * 108.58012 * 228.97164 * 2 1 3 5 5 C 1.81398 * 101.92101 * 114.48476 * 2 1 3 6 6 H 1.08995 * 109.47424 * 300.00025 * 5 2 1 7 7 C 1.53005 * 109.46914 * 60.00342 * 5 2 1 8 8 C 1.53003 * 109.46746 * 180.02562 * 7 5 2 9 9 C 1.52995 * 109.47335 * 299.99367 * 8 7 5 10 10 H 1.08995 * 109.47551 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.47289 * 300.00426 * 9 8 7 12 12 C 1.34770 * 120.00129 * 274.99769 * 11 9 8 13 13 O 1.21643 * 120.00118 * 0.02562 * 12 11 9 14 14 C 1.47064 * 120.00128 * 180.02562 * 12 11 9 15 15 C 1.35864 * 125.42727 * 179.97438 * 14 12 11 16 16 C 1.41584 * 107.72959 * 180.02562 * 15 14 12 17 17 C 1.40063 * 133.38405 * 180.02562 * 16 15 14 18 18 C 1.36476 * 119.82887 * 179.76870 * 17 16 15 19 19 C 1.38899 * 120.61481 * 0.51018 * 18 17 16 20 20 C 1.50707 * 119.67403 * 179.74220 * 19 18 17 21 21 O 1.42903 * 109.46442 * 244.72832 * 20 19 18 22 22 Si 1.86293 * 109.47256 * 4.72399 * 20 19 18 23 23 C 1.37709 * 120.64941 * 359.46194 * 19 18 17 24 24 C 1.39187 * 119.80647 * 0.27727 * 23 19 18 25 25 N 1.37487 * 133.18205 * 179.97438 * 24 23 19 26 26 C 1.53000 * 109.46853 * 60.00280 * 9 8 7 27 27 C 1.52995 * 109.47491 * 299.99933 * 26 9 8 28 28 H 1.09001 * 109.47399 * 305.51773 * 1 2 3 29 29 H 1.09008 * 109.46838 * 65.51506 * 1 2 3 30 30 H 1.08998 * 109.47284 * 185.51050 * 1 2 3 31 31 H 1.08996 * 109.46836 * 299.99833 * 7 5 2 32 32 H 1.08995 * 109.47417 * 60.00179 * 7 5 2 33 33 H 1.08999 * 109.46657 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47758 * 60.00215 * 8 7 5 35 35 H 0.97004 * 119.99812 * 95.00207 * 11 9 8 36 36 H 1.08003 * 126.13428 * 0.02562 * 15 14 12 37 37 H 1.07996 * 120.08917 * 0.02562 * 17 16 15 38 38 H 1.08004 * 119.69367 * 180.24939 * 18 17 16 39 39 H 1.08999 * 109.47345 * 124.72902 * 20 19 18 40 40 H 0.96700 * 114.00311 * 60.00230 * 21 20 19 41 41 H 1.48501 * 109.99918 * 58.68485 * 22 20 19 42 42 H 1.48506 * 109.99973 * 180.02562 * 22 20 19 43 43 H 1.07994 * 120.09773 * 180.29056 * 23 19 18 44 44 H 0.96998 * 125.60493 * 0.02562 * 25 24 23 45 45 H 1.09005 * 109.47038 * 60.00328 * 26 9 8 46 46 H 1.09003 * 109.47387 * 180.02562 * 26 9 8 47 47 H 1.09000 * 109.47691 * 179.97438 * 27 26 9 48 48 H 1.09005 * 109.47302 * 300.00234 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6152 6 1 1.7610 -0.1170 2.4042 7 6 1.5883 -2.1411 1.6871 8 6 1.9039 -2.7613 3.0498 9 6 3.4205 -2.8446 3.2334 10 1 3.6453 -3.2868 4.2039 11 7 3.9958 -3.6762 2.1733 12 6 4.0350 -5.0159 2.3143 13 8 3.5923 -5.5348 3.3216 14 6 4.6131 -5.8507 1.2505 15 6 4.7090 -7.2057 1.2771 16 6 5.3228 -7.6183 0.0697 17 6 5.6738 -8.8696 -0.4524 18 6 6.2654 -8.9515 -1.6796 19 6 6.5333 -7.8032 -2.4137 20 6 7.1925 -7.9178 -3.7640 21 8 8.4803 -7.2999 -3.7193 22 14 7.3818 -9.7161 -4.2120 23 6 6.1972 -6.5614 -1.9222 24 6 5.5882 -6.4524 -0.6754 25 7 5.1463 -5.3819 0.0654 26 6 4.0208 -1.4391 3.1614 27 6 3.7054 -0.8189 1.7989 28 1 -0.3634 0.5970 0.8364 29 1 -0.3633 0.4260 -0.9353 30 1 -0.3634 -1.0229 0.0987 31 1 0.5078 -2.0817 1.5568 32 1 2.0161 -2.7597 0.8982 33 1 1.4758 -3.7624 3.1012 34 1 1.4758 -2.1427 3.8385 35 1 4.3485 -3.2625 1.3700 36 1 4.3768 -7.8521 2.0760 37 1 5.4732 -9.7678 0.1128 38 1 6.5315 -9.9178 -2.0818 39 1 6.5764 -7.4198 -4.5127 40 1 9.0829 -7.6931 -3.0732 41 1 6.0524 -10.3776 -4.2307 42 1 8.0314 -9.8427 -5.5415 43 1 6.4054 -5.6748 -2.5026 44 1 5.1998 -4.4506 -0.2004 45 1 3.5928 -0.8204 3.9502 46 1 5.1014 -1.4985 3.2918 47 1 4.1327 0.1826 1.7478 48 1 4.1334 -1.4376 1.0101 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14783808_13158378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:38 Heat of formation + Delta-G solvation = -73.873635 kcal Electronic energy + Delta-G solvation = -32900.885474 eV Core-core repulsion = 28436.097935 eV Total energy + Delta-G solvation = -4464.787540 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.133 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -42.71260 -41.26690 -39.47148 -38.79154 -38.11650 -37.15785 -36.88115 -35.18281 -33.27567 -32.46805 -31.90745 -30.76797 -30.43020 -30.38073 -26.94398 -24.89127 -24.16975 -24.04380 -23.22012 -22.04526 -21.40228 -20.62890 -19.96148 -19.71683 -18.44676 -18.24441 -17.77851 -17.47612 -17.17429 -16.88769 -16.78779 -16.57611 -16.21137 -16.08533 -15.66845 -15.56053 -15.32463 -15.05685 -14.90351 -14.82736 -14.66148 -14.47426 -14.39069 -14.24777 -14.06905 -14.03564 -13.74907 -13.58864 -13.20871 -13.13522 -13.11921 -12.84301 -12.57771 -12.56040 -12.52649 -12.19656 -12.12770 -11.97226 -11.77854 -11.64898 -11.28124 -11.15379 -10.92022 -10.43840 -10.33758 -9.31462 -8.81951 -4.99432 -1.20618 -0.33594 0.53284 1.00384 1.30887 1.52522 1.67846 1.76032 1.89491 2.02066 2.24650 2.42788 2.73987 2.78701 3.07278 3.16320 3.41347 3.45996 3.53358 3.61291 3.64693 3.65697 3.71651 3.73790 3.83463 3.86534 4.01537 4.01733 4.09148 4.17575 4.25117 4.30429 4.35400 4.44585 4.47365 4.47889 4.58790 4.60449 4.68752 4.71590 4.75177 4.80486 4.89418 4.93721 4.97366 5.20472 5.35270 5.41430 5.53389 5.61696 5.97205 6.17034 6.32598 6.58091 6.95390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.416 3.584 3 O -0.937 6.937 4 O -0.937 6.937 5 C -0.572 4.572 6 H 0.143 0.857 7 C -0.110 4.110 8 C -0.124 4.124 9 C 0.144 3.856 10 H 0.100 0.900 11 N -0.725 5.725 12 C 0.587 3.413 13 O -0.516 6.516 14 C 0.011 3.989 15 C -0.099 4.099 16 C -0.117 4.117 17 C -0.051 4.051 18 C -0.145 4.145 19 C -0.088 4.088 20 C -0.069 4.069 21 O -0.540 6.540 22 Si 0.691 3.309 23 C -0.103 4.103 24 C 0.117 3.883 25 N -0.578 5.578 26 C -0.120 4.120 27 C -0.108 4.108 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.396 0.604 36 H 0.158 0.842 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.380 0.620 41 H -0.257 1.257 42 H -0.256 1.256 43 H 0.127 0.873 44 H 0.418 0.582 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.842 0.124 3.032 3.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.599 3.401 3 O -0.934 6.934 4 O -0.934 6.934 5 C -0.681 4.681 6 H 0.161 0.839 7 C -0.148 4.148 8 C -0.164 4.164 9 C 0.040 3.960 10 H 0.118 0.882 11 N -0.378 5.378 12 C 0.373 3.627 13 O -0.391 6.391 14 C -0.098 4.098 15 C -0.126 4.126 16 C -0.121 4.121 17 C -0.070 4.070 18 C -0.163 4.163 19 C -0.090 4.090 20 C -0.179 4.179 21 O -0.346 6.346 22 Si 0.593 3.407 23 C -0.124 4.124 24 C 0.006 3.994 25 N -0.183 5.183 26 C -0.159 4.159 27 C -0.146 4.146 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.231 0.769 36 H 0.176 0.824 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.227 0.773 41 H -0.182 1.182 42 H -0.181 1.181 43 H 0.145 0.855 44 H 0.256 0.744 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.104 -0.012 2.095 2.369 hybrid contribution -0.904 1.147 0.050 1.461 sum -2.008 1.135 2.145 3.150 Atomic orbital electron populations 1.30286 1.26438 1.11799 1.12135 1.08085 0.78609 0.75718 0.77659 1.93622 1.79135 1.34280 1.86383 1.93596 1.79096 1.66965 1.53710 1.30269 1.05555 1.08865 1.23449 0.83882 1.21455 1.00839 0.92002 1.00529 1.21873 0.95685 1.02260 0.96555 1.21039 0.92731 0.90315 0.91884 0.88222 1.46063 1.63116 1.06124 1.22484 1.17192 0.78458 0.81577 0.85424 1.90876 1.46712 1.72872 1.28687 1.20094 1.07054 0.94201 0.88466 1.20962 1.01366 0.92413 0.97852 1.18217 1.05177 0.93110 0.95643 1.20375 0.95967 0.95812 0.94810 1.20463 1.03027 0.97230 0.95591 1.20034 0.99524 0.92704 0.96745 1.25087 0.86054 1.10814 0.95976 1.86509 1.22583 1.61730 1.63742 0.94621 0.85164 0.76520 0.84416 1.19889 1.01162 0.98159 0.93165 1.18310 1.00189 0.86759 0.94096 1.41919 1.52602 1.08259 1.15509 1.21786 1.02051 0.94843 0.97176 1.21359 0.90490 1.03278 0.99506 0.85114 0.85017 0.85107 0.90164 0.89922 0.90201 0.90019 0.76917 0.82410 0.85003 0.85332 0.86919 0.77305 1.18168 1.18128 0.85517 0.74431 0.89200 0.90047 0.89188 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.99 10.17 101.05 1.03 4.02 16 2 S 2.42 -4.87 4.88 -107.50 -0.52 -5.40 16 3 O -0.94 -1.97 18.10 -57.83 -1.05 -3.02 16 4 O -0.94 -1.35 17.91 -57.83 -1.04 -2.39 16 5 C -0.57 2.51 2.58 -26.72 -0.07 2.45 16 6 H 0.14 -0.96 8.14 -51.93 -0.42 -1.38 16 7 C -0.11 0.44 4.80 -26.73 -0.13 0.31 16 8 C -0.12 0.38 5.60 -26.73 -0.15 0.23 16 9 C 0.14 -0.36 2.78 -67.93 -0.19 -0.55 16 10 H 0.10 -0.11 7.57 -51.93 -0.39 -0.51 16 11 N -0.73 1.33 4.23 -55.00 -0.23 1.10 16 12 C 0.59 0.72 7.76 -12.68 -0.10 0.62 16 13 O -0.52 -2.31 16.50 5.24 0.09 -2.22 16 14 C 0.01 0.01 6.97 -82.29 -0.57 -0.56 16 15 C -0.10 -0.17 10.53 -39.16 -0.41 -0.58 16 16 C -0.12 -0.19 6.16 -106.93 -0.66 -0.85 16 17 C -0.05 -0.01 10.06 -39.53 -0.40 -0.41 16 18 C -0.14 0.06 8.59 -39.97 -0.34 -0.29 16 19 C -0.09 -0.02 5.36 -104.57 -0.56 -0.58 16 20 C -0.07 0.02 2.79 36.01 0.10 0.12 16 21 O -0.54 -0.09 12.83 -35.23 -0.45 -0.54 16 22 Si 0.69 -0.73 29.76 -169.99 -5.06 -5.79 16 23 C -0.10 -0.08 9.69 -39.42 -0.38 -0.47 16 24 C 0.12 0.14 7.25 -83.97 -0.61 -0.47 16 25 N -0.58 0.19 6.07 -7.35 -0.04 0.14 16 26 C -0.12 0.50 5.61 -26.73 -0.15 0.35 16 27 C -0.11 0.42 5.04 -26.73 -0.13 0.28 16 28 H 0.13 -0.83 8.14 -51.92 -0.42 -1.25 16 29 H 0.13 -0.57 8.14 -51.92 -0.42 -1.00 16 30 H 0.13 -0.79 6.87 -51.92 -0.36 -1.15 16 31 H 0.08 -0.47 6.56 -51.93 -0.34 -0.81 16 32 H 0.08 -0.26 7.52 -51.93 -0.39 -0.65 16 33 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 34 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 35 H 0.40 -1.43 5.92 -40.82 -0.24 -1.67 16 36 H 0.16 0.15 8.06 -52.48 -0.42 -0.27 16 37 H 0.13 -0.24 8.06 -52.49 -0.42 -0.67 16 38 H 0.13 -0.31 4.85 -52.48 -0.25 -0.57 16 39 H 0.11 0.02 7.96 -51.93 -0.41 -0.39 16 40 H 0.38 -1.38 8.70 45.56 0.40 -0.98 16 41 H -0.26 -0.34 7.11 56.52 0.40 0.06 16 42 H -0.26 -0.58 7.11 56.52 0.40 -0.18 16 43 H 0.13 0.01 8.06 -52.49 -0.42 -0.41 16 44 H 0.42 -1.21 8.12 -40.82 -0.33 -1.55 16 45 H 0.09 -0.45 8.14 -51.93 -0.42 -0.87 16 46 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 47 H 0.09 -0.35 8.14 -51.93 -0.42 -0.78 16 48 H 0.07 -0.31 6.51 -51.93 -0.34 -0.65 16 LS Contribution 396.11 15.07 5.97 5.97 Total: 0.00 -13.67 396.11 -12.58 -26.25 By element: Atomic # 1 Polarization: -11.21 SS G_CDS: -6.51 Total: -17.72 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -3.73 Total: 3.63 kcal Atomic # 7 Polarization: 1.52 SS G_CDS: -0.28 Total: 1.24 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -2.45 Total: -8.17 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: -5.06 Total: -5.79 kcal Atomic # 16 Polarization: -4.87 SS G_CDS: -0.52 Total: -5.40 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -13.67 -12.58 -26.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_13158378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.623 kcal (2) G-P(sol) polarization free energy of solvation -13.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds