Wall clock time and date at job start Tue Mar 9 2021 13:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42095 * 108.58091 * 2 1 4 4 O 1.42099 * 108.58012 * 228.97164 * 2 1 3 5 5 C 1.81398 * 101.92101 * 114.48476 * 2 1 3 6 6 H 1.08995 * 109.47424 * 300.00025 * 5 2 1 7 7 C 1.53005 * 109.46914 * 60.00342 * 5 2 1 8 8 C 1.53003 * 109.46746 * 180.02562 * 7 5 2 9 9 C 1.52995 * 109.47335 * 299.99367 * 8 7 5 10 10 H 1.08995 * 109.47551 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.47289 * 300.00426 * 9 8 7 12 12 C 1.34770 * 120.00129 * 274.99769 * 11 9 8 13 13 O 1.21643 * 120.00118 * 0.02562 * 12 11 9 14 14 C 1.47064 * 120.00128 * 180.02562 * 12 11 9 15 15 C 1.35864 * 125.42727 * 179.97438 * 14 12 11 16 16 C 1.41584 * 107.72959 * 180.02562 * 15 14 12 17 17 C 1.40063 * 133.38405 * 180.02562 * 16 15 14 18 18 C 1.36476 * 119.82887 * 179.76870 * 17 16 15 19 19 C 1.38899 * 120.61481 * 0.51018 * 18 17 16 20 20 C 1.50707 * 119.67403 * 179.74220 * 19 18 17 21 21 O 1.42903 * 109.46442 * 244.72832 * 20 19 18 22 22 Si 1.86293 * 109.47256 * 4.72399 * 20 19 18 23 23 C 1.37709 * 120.64941 * 359.46194 * 19 18 17 24 24 C 1.39187 * 119.80647 * 0.27727 * 23 19 18 25 25 N 1.37487 * 133.18205 * 179.97438 * 24 23 19 26 26 C 1.53000 * 109.46853 * 60.00280 * 9 8 7 27 27 C 1.52995 * 109.47491 * 299.99933 * 26 9 8 28 28 H 1.09001 * 109.47399 * 305.51773 * 1 2 3 29 29 H 1.09008 * 109.46838 * 65.51506 * 1 2 3 30 30 H 1.08998 * 109.47284 * 185.51050 * 1 2 3 31 31 H 1.08996 * 109.46836 * 299.99833 * 7 5 2 32 32 H 1.08995 * 109.47417 * 60.00179 * 7 5 2 33 33 H 1.08999 * 109.46657 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47758 * 60.00215 * 8 7 5 35 35 H 0.97004 * 119.99812 * 95.00207 * 11 9 8 36 36 H 1.08003 * 126.13428 * 0.02562 * 15 14 12 37 37 H 1.07996 * 120.08917 * 0.02562 * 17 16 15 38 38 H 1.08004 * 119.69367 * 180.24939 * 18 17 16 39 39 H 1.08999 * 109.47345 * 124.72902 * 20 19 18 40 40 H 0.96700 * 114.00311 * 60.00230 * 21 20 19 41 41 H 1.48501 * 109.99918 * 58.68485 * 22 20 19 42 42 H 1.48506 * 109.99973 * 180.02562 * 22 20 19 43 43 H 1.07994 * 120.09773 * 180.29056 * 23 19 18 44 44 H 0.96998 * 125.60493 * 0.02562 * 25 24 23 45 45 H 1.09005 * 109.47038 * 60.00328 * 26 9 8 46 46 H 1.09003 * 109.47387 * 180.02562 * 26 9 8 47 47 H 1.09000 * 109.47691 * 179.97438 * 27 26 9 48 48 H 1.09005 * 109.47302 * 300.00234 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6152 6 1 1.7610 -0.1170 2.4042 7 6 1.5883 -2.1411 1.6871 8 6 1.9039 -2.7613 3.0498 9 6 3.4205 -2.8446 3.2334 10 1 3.6453 -3.2868 4.2039 11 7 3.9958 -3.6762 2.1733 12 6 4.0350 -5.0159 2.3143 13 8 3.5923 -5.5348 3.3216 14 6 4.6131 -5.8507 1.2505 15 6 4.7090 -7.2057 1.2771 16 6 5.3228 -7.6183 0.0697 17 6 5.6738 -8.8696 -0.4524 18 6 6.2654 -8.9515 -1.6796 19 6 6.5333 -7.8032 -2.4137 20 6 7.1925 -7.9178 -3.7640 21 8 8.4803 -7.2999 -3.7193 22 14 7.3818 -9.7161 -4.2120 23 6 6.1972 -6.5614 -1.9222 24 6 5.5882 -6.4524 -0.6754 25 7 5.1463 -5.3819 0.0654 26 6 4.0208 -1.4391 3.1614 27 6 3.7054 -0.8189 1.7989 28 1 -0.3634 0.5970 0.8364 29 1 -0.3633 0.4260 -0.9353 30 1 -0.3634 -1.0229 0.0987 31 1 0.5078 -2.0817 1.5568 32 1 2.0161 -2.7597 0.8982 33 1 1.4758 -3.7624 3.1012 34 1 1.4758 -2.1427 3.8385 35 1 4.3485 -3.2625 1.3700 36 1 4.3768 -7.8521 2.0760 37 1 5.4732 -9.7678 0.1128 38 1 6.5315 -9.9178 -2.0818 39 1 6.5764 -7.4198 -4.5127 40 1 9.0829 -7.6931 -3.0732 41 1 6.0524 -10.3776 -4.2307 42 1 8.0314 -9.8427 -5.5415 43 1 6.4054 -5.6748 -2.5026 44 1 5.1998 -4.4506 -0.2004 45 1 3.5928 -0.8204 3.9502 46 1 5.1014 -1.4985 3.2918 47 1 4.1327 0.1826 1.7478 48 1 4.1334 -1.4376 1.0101 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_13158378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:37 Heat of formation + Delta-G solvation = -80.224782 kcal Electronic energy + Delta-G solvation = -32901.160881 eV Core-core repulsion = 28436.097935 eV Total energy + Delta-G solvation = -4465.062946 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.133 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.74345 -41.19704 -39.40411 -38.80153 -38.06993 -37.10852 -36.88146 -35.11491 -33.29953 -32.18011 -31.80662 -30.66847 -30.41550 -30.12341 -26.95346 -24.81462 -23.91759 -23.85977 -23.22649 -22.05469 -21.40340 -20.48733 -19.80195 -19.70578 -18.43154 -18.05323 -17.77760 -17.33007 -17.02728 -16.86807 -16.74129 -16.52181 -16.19304 -15.99715 -15.59283 -15.56114 -15.21275 -14.93238 -14.83406 -14.73044 -14.65410 -14.50989 -14.10588 -14.04389 -13.96518 -13.82215 -13.52524 -13.31730 -13.16640 -13.13383 -13.09828 -12.65715 -12.56714 -12.52949 -12.27850 -12.05400 -12.02362 -11.83174 -11.65909 -11.53334 -11.39342 -10.97528 -10.92866 -10.43180 -10.28078 -9.34696 -8.85049 -4.94462 -0.99745 -0.38681 0.51618 0.93284 1.34182 1.69149 1.74710 1.77775 1.95278 2.02633 2.16478 2.65139 2.76061 2.97047 3.36608 3.44828 3.48131 3.58542 3.69380 3.72886 3.76092 3.87185 3.99579 4.03301 4.03383 4.13356 4.19446 4.23517 4.28415 4.33180 4.39500 4.44655 4.47657 4.48641 4.61554 4.66531 4.82849 4.86967 4.90806 4.94871 4.97214 5.02346 5.04410 5.07354 5.17734 5.29198 5.38890 5.41390 5.52294 5.57398 5.97187 6.20468 6.37679 6.79369 6.92239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.411 3.589 3 O -0.987 6.987 4 O -0.982 6.982 5 C -0.552 4.552 6 H 0.176 0.824 7 C -0.114 4.114 8 C -0.122 4.122 9 C 0.139 3.861 10 H 0.085 0.915 11 N -0.711 5.711 12 C 0.588 3.412 13 O -0.554 6.554 14 C 0.006 3.994 15 C -0.115 4.115 16 C -0.133 4.133 17 C -0.056 4.056 18 C -0.146 4.146 19 C -0.089 4.089 20 C -0.074 4.074 21 O -0.556 6.556 22 Si 0.781 3.219 23 C -0.114 4.114 24 C 0.105 3.895 25 N -0.569 5.569 26 C -0.111 4.111 27 C -0.119 4.119 28 H 0.156 0.844 29 H 0.130 0.870 30 H 0.151 0.849 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.405 0.595 36 H 0.158 0.842 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.106 0.894 40 H 0.396 0.604 41 H -0.285 1.285 42 H -0.302 1.302 43 H 0.130 0.870 44 H 0.428 0.572 45 H 0.106 0.894 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 0.404 3.796 4.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.600 3.400 3 O -0.984 6.984 4 O -0.980 6.980 5 C -0.663 4.663 6 H 0.193 0.807 7 C -0.153 4.153 8 C -0.161 4.161 9 C 0.035 3.965 10 H 0.103 0.897 11 N -0.363 5.363 12 C 0.375 3.625 13 O -0.433 6.433 14 C -0.103 4.103 15 C -0.142 4.142 16 C -0.138 4.138 17 C -0.075 4.075 18 C -0.164 4.164 19 C -0.091 4.091 20 C -0.184 4.184 21 O -0.364 6.364 22 Si 0.687 3.313 23 C -0.135 4.135 24 C -0.005 4.005 25 N -0.174 5.174 26 C -0.150 4.150 27 C -0.157 4.157 28 H 0.174 0.826 29 H 0.149 0.851 30 H 0.169 0.831 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.241 0.759 36 H 0.176 0.824 37 H 0.169 0.831 38 H 0.168 0.832 39 H 0.124 0.876 40 H 0.246 0.754 41 H -0.212 1.212 42 H -0.230 1.230 43 H 0.147 0.853 44 H 0.268 0.732 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.110 0.890 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.740 0.339 2.836 3.344 hybrid contribution -0.717 1.057 -0.197 1.292 sum -2.456 1.396 2.638 3.866 Atomic orbital electron populations 1.30181 1.22736 1.13724 1.13333 1.07872 0.79823 0.74250 0.78034 1.93558 1.80904 1.36598 1.87337 1.93535 1.80758 1.67412 1.56245 1.30095 1.05422 1.08859 1.21963 0.80674 1.21539 1.02479 0.91715 0.99543 1.21849 0.94882 1.01648 0.97716 1.21184 0.93565 0.90897 0.90860 0.89650 1.46029 1.62052 1.05260 1.22964 1.17226 0.78094 0.82355 0.84874 1.90849 1.48637 1.73685 1.30081 1.20113 1.07156 0.94249 0.88828 1.21101 1.01990 0.92897 0.98231 1.18448 1.05657 0.93950 0.95721 1.20660 0.95594 0.96053 0.95170 1.20694 1.02481 0.97903 0.95314 1.20165 0.99225 0.92795 0.96891 1.25224 0.85990 1.11593 0.95599 1.86472 1.22929 1.62389 1.64579 0.93588 0.81926 0.74193 0.81566 1.20005 1.01599 0.98687 0.93178 1.18468 1.00554 0.87126 0.94398 1.41857 1.51984 1.08683 1.14885 1.21753 1.02190 0.93670 0.97389 1.21483 0.91013 1.03511 0.99721 0.82587 0.85104 0.83114 0.87669 0.91116 0.92186 0.88027 0.75858 0.82393 0.83128 0.83246 0.87638 0.75422 1.21192 1.23041 0.85254 0.73210 0.87537 0.89898 0.88967 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 6.94 10.17 113.37 1.15 8.09 16 2 S 2.41 -9.31 4.88 -56.49 -0.28 -9.58 16 3 O -0.99 -5.08 18.10 -127.37 -2.30 -7.38 16 4 O -0.98 -4.14 17.91 -127.37 -2.28 -6.42 16 5 C -0.55 5.52 2.58 30.60 0.08 5.60 16 6 H 0.18 -2.86 8.14 -2.39 -0.02 -2.88 16 7 C -0.11 1.05 4.80 30.60 0.15 1.19 16 8 C -0.12 0.83 5.60 30.59 0.17 1.00 16 9 C 0.14 -0.69 2.78 44.99 0.13 -0.57 16 10 H 0.09 -0.14 7.57 -2.39 -0.02 -0.15 16 11 N -0.71 2.06 4.23 -446.16 -1.89 0.17 16 12 C 0.59 2.28 7.76 86.56 0.67 2.95 16 13 O -0.55 -5.99 16.50 -4.17 -0.07 -6.06 16 14 C 0.01 0.02 6.97 39.91 0.28 0.30 16 15 C -0.12 -0.57 10.53 22.54 0.24 -0.33 16 16 C -0.13 -0.54 6.16 -21.36 -0.13 -0.67 16 17 C -0.06 -0.02 10.06 22.30 0.22 0.20 16 18 C -0.15 0.17 8.59 22.02 0.19 0.36 16 19 C -0.09 -0.05 5.36 -19.83 -0.11 -0.15 16 20 C -0.07 0.03 2.79 71.24 0.20 0.23 16 21 O -0.56 -0.13 12.83 -148.98 -1.91 -2.04 16 22 Si 0.78 -1.80 29.76 68.60 2.04 0.25 16 23 C -0.11 -0.26 9.69 22.37 0.22 -0.04 16 24 C 0.11 0.35 7.25 39.13 0.28 0.64 16 25 N -0.57 -0.25 6.07 -177.18 -1.08 -1.33 16 26 C -0.11 1.02 5.61 30.59 0.17 1.19 16 27 C -0.12 0.97 5.04 30.60 0.15 1.12 16 28 H 0.16 -2.42 8.14 -2.39 -0.02 -2.44 16 29 H 0.13 -1.26 8.14 -2.39 -0.02 -1.28 16 30 H 0.15 -2.19 6.87 -2.39 -0.02 -2.20 16 31 H 0.10 -1.47 6.56 -2.39 -0.02 -1.49 16 32 H 0.07 -0.44 7.52 -2.39 -0.02 -0.46 16 33 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.10 -1.08 8.14 -2.39 -0.02 -1.10 16 35 H 0.40 -2.64 5.92 -92.70 -0.55 -3.19 16 36 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.15 -0.63 8.06 -2.91 -0.02 -0.65 16 38 H 0.15 -0.91 4.85 -2.91 -0.01 -0.93 16 39 H 0.11 0.09 7.96 -2.39 -0.02 0.07 16 40 H 0.40 -3.08 8.70 -74.06 -0.64 -3.72 16 41 H -0.29 -0.70 7.11 99.48 0.71 0.01 16 42 H -0.30 -1.64 7.11 99.48 0.71 -0.94 16 43 H 0.13 0.14 8.06 -2.91 -0.02 0.11 16 44 H 0.43 -2.06 8.12 -92.71 -0.75 -2.82 16 45 H 0.11 -1.28 8.14 -2.38 -0.02 -1.30 16 46 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 47 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 48 H 0.07 -0.58 6.51 -2.38 -0.02 -0.59 16 Total: 0.00 -33.72 396.11 -4.57 -38.30 By element: Atomic # 1 Polarization: -26.16 SS G_CDS: -0.87 Total: -27.03 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: 4.06 Total: 21.13 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -2.96 Total: -1.15 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -6.57 Total: -21.90 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: 2.04 Total: 0.25 kcal Atomic # 16 Polarization: -9.31 SS G_CDS: -0.28 Total: -9.58 kcal Total: -33.72 -4.57 -38.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_13158378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.927 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds