Wall clock time and date at job start Tue Mar 9 2021 13:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42099 * 108.57810 * 2 1 4 4 O 1.42100 * 108.57707 * 228.97396 * 2 1 3 5 5 C 1.81394 * 101.91941 * 114.48226 * 2 1 3 6 6 H 1.09001 * 109.47726 * 300.00224 * 5 2 1 7 7 C 1.53008 * 109.47158 * 60.00180 * 5 2 1 8 8 C 1.52998 * 109.47052 * 179.97438 * 7 5 2 9 9 C 1.52999 * 109.47545 * 299.99991 * 8 7 5 10 10 H 1.08997 * 109.47097 * 180.02562 * 9 8 7 11 11 N 1.46497 * 109.47056 * 300.00210 * 9 8 7 12 12 C 1.34780 * 119.99944 * 274.99835 * 11 9 8 13 13 O 1.21581 * 119.99799 * 0.02562 * 12 11 9 14 14 C 1.47537 * 119.99907 * 180.02562 * 12 11 9 15 15 C 1.40133 * 120.19226 * 179.97438 * 14 12 11 16 16 O 1.35655 * 120.14989 * 0.02562 * 15 14 12 17 17 C 1.38704 * 119.70246 * 179.72605 * 15 14 12 18 18 C 1.38056 * 120.08616 * 0.27615 * 17 15 14 19 19 C 1.50702 * 119.80839 * 179.97438 * 18 17 15 20 20 O 1.42895 * 109.47287 * 64.99931 * 19 18 17 21 21 Si 1.86296 * 109.47096 * 184.99907 * 19 18 17 22 22 C 1.38552 * 120.38888 * 359.95398 * 18 17 15 23 23 C 1.37788 * 120.29635 * 0.02562 * 22 18 17 24 24 C 1.52995 * 109.47113 * 60.00077 * 9 8 7 25 25 C 1.52999 * 109.47103 * 179.97438 * 5 2 1 26 26 H 1.09005 * 109.47219 * 305.51605 * 1 2 3 27 27 H 1.08998 * 109.46990 * 65.51555 * 1 2 3 28 28 H 1.08996 * 109.47428 * 185.51508 * 1 2 3 29 29 H 1.08996 * 109.47135 * 299.99769 * 7 5 2 30 30 H 1.09001 * 109.46766 * 59.99456 * 7 5 2 31 31 H 1.09003 * 109.46941 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47391 * 60.00315 * 8 7 5 33 33 H 0.96999 * 120.00379 * 94.99775 * 11 9 8 34 34 H 0.96696 * 114.00102 * 269.72245 * 16 15 14 35 35 H 1.08004 * 119.96378 * 180.25466 * 17 15 14 36 36 H 1.09001 * 109.46963 * 304.99555 * 19 18 17 37 37 H 0.96698 * 114.00467 * 59.99848 * 20 19 18 38 38 H 1.48507 * 110.00090 * 58.67646 * 21 19 18 39 39 H 1.48498 * 110.00114 * 179.97438 * 21 19 18 40 40 H 1.07990 * 119.85203 * 180.02562 * 22 18 17 41 41 H 1.08004 * 120.04389 * 180.02562 * 23 22 18 42 42 H 1.09005 * 109.47441 * 59.99987 * 24 9 8 43 43 H 1.08996 * 109.47309 * 180.02562 * 24 9 8 44 44 H 1.09003 * 109.47078 * 60.00130 * 25 5 2 45 45 H 1.09005 * 109.46977 * 299.99920 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7355 1.6153 6 1 1.7610 -0.1169 2.4043 7 6 1.5883 -2.1410 1.6873 8 6 1.9049 -2.7616 3.0494 9 6 3.4217 -2.8450 3.2319 10 1 3.6471 -3.2876 4.2021 11 7 3.9961 -3.6763 2.1712 12 6 4.0354 -5.0162 2.3118 13 8 3.5937 -5.5349 3.3188 14 6 4.6145 -5.8533 1.2438 15 6 4.6579 -7.2467 1.3860 16 8 4.1670 -7.8329 2.5066 17 6 5.1993 -8.0244 0.3731 18 6 5.6981 -7.4266 -0.7669 19 6 6.2855 -8.2775 -1.8633 20 8 5.2619 -9.0979 -2.4298 21 14 7.0032 -7.1785 -3.1853 22 6 5.6614 -6.0489 -0.9093 23 6 5.1267 -5.2611 0.0867 24 6 4.0220 -1.4396 3.1599 25 6 3.7054 -0.8194 1.7980 26 1 -0.3634 0.5970 0.8365 27 1 -0.3633 0.4259 -0.9352 28 1 -0.3634 -1.0228 0.0988 29 1 0.5078 -2.0817 1.5569 30 1 2.0160 -2.7596 0.8982 31 1 1.4768 -3.7628 3.1009 32 1 1.4774 -2.1432 3.8387 33 1 4.3482 -3.2625 1.3677 34 1 4.8200 -7.9430 3.2112 35 1 5.2311 -9.0990 0.4765 36 1 7.0714 -8.9101 -1.4506 37 1 4.5283 -8.6006 -2.8167 38 1 8.0470 -6.2977 -2.6022 39 1 7.5863 -8.0056 -4.2721 40 1 6.0536 -5.5904 -1.8050 41 1 5.0998 -4.1876 -0.0287 42 1 3.5946 -0.8210 3.9491 43 1 5.1026 -1.4990 3.2895 44 1 4.1335 0.1817 1.7465 45 1 4.1327 -1.4384 1.0090 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14783808_13422076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:34 Heat of formation + Delta-G solvation = -145.940311 kcal Electronic energy + Delta-G solvation = -30635.474097 eV Core-core repulsion = 26326.295131 eV Total energy + Delta-G solvation = -4309.178967 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.81015 -40.65615 -39.08860 -38.30263 -38.04868 -37.14852 -37.09658 -34.99395 -33.05559 -32.37198 -31.12557 -31.06809 -30.39472 -27.48202 -24.53164 -24.08653 -23.94602 -23.49986 -21.94243 -20.49761 -19.89418 -19.54171 -18.80460 -18.23206 -18.15730 -17.47439 -17.14095 -16.89481 -16.75736 -16.36900 -16.31251 -16.24586 -15.95188 -15.56216 -15.34174 -15.06032 -14.91573 -14.84128 -14.38007 -14.33467 -14.18561 -13.98566 -13.86514 -13.64399 -13.50837 -13.30015 -13.14538 -13.05952 -12.90345 -12.72638 -12.49009 -12.31424 -12.16049 -12.13157 -12.03393 -11.68516 -11.67881 -11.07391 -10.83173 -10.53931 -10.20838 -10.06107 -9.79294 -5.10084 -1.14559 -0.41713 0.09683 1.18172 1.55461 1.58395 1.76102 1.90338 2.03917 2.48597 2.56968 2.80592 3.09655 3.14932 3.23717 3.35308 3.42759 3.53836 3.61015 3.65466 3.70101 3.72684 3.82582 3.91253 3.94381 3.98272 4.10863 4.16940 4.19905 4.27420 4.33069 4.44235 4.53001 4.54944 4.66003 4.68386 4.76754 4.79797 4.82971 4.91189 4.96134 5.02953 5.11759 5.19162 5.41685 5.52119 6.41203 6.46956 6.68866 7.19695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.416 3.584 3 O -0.938 6.938 4 O -0.935 6.935 5 C -0.572 4.572 6 H 0.142 0.858 7 C -0.110 4.110 8 C -0.124 4.124 9 C 0.145 3.855 10 H 0.096 0.904 11 N -0.725 5.725 12 C 0.560 3.440 13 O -0.517 6.517 14 C -0.166 4.166 15 C 0.173 3.827 16 O -0.476 6.476 17 C -0.129 4.129 18 C -0.076 4.076 19 C -0.074 4.074 20 O -0.536 6.536 21 Si 0.690 3.310 22 C -0.134 4.134 23 C -0.065 4.065 24 C -0.119 4.119 25 C -0.108 4.108 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.398 0.602 34 H 0.397 0.603 35 H 0.140 0.860 36 H 0.117 0.883 37 H 0.381 0.619 38 H -0.255 1.255 39 H -0.252 1.252 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.058 3.059 0.167 3.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.599 3.401 3 O -0.935 6.935 4 O -0.932 6.932 5 C -0.681 4.681 6 H 0.160 0.840 7 C -0.148 4.148 8 C -0.163 4.163 9 C 0.041 3.959 10 H 0.114 0.886 11 N -0.379 5.379 12 C 0.348 3.652 13 O -0.393 6.393 14 C -0.169 4.169 15 C 0.126 3.874 16 O -0.287 6.287 17 C -0.148 4.148 18 C -0.077 4.077 19 C -0.184 4.184 20 O -0.342 6.342 21 Si 0.591 3.409 22 C -0.151 4.151 23 C -0.084 4.084 24 C -0.158 4.158 25 C -0.147 4.147 26 H 0.148 0.852 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.235 0.765 34 H 0.256 0.744 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.229 0.771 38 H -0.180 1.180 39 H -0.177 1.177 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.214 2.759 -0.300 2.783 hybrid contribution -0.054 -0.271 1.065 1.100 sum -0.268 2.488 0.765 2.616 Atomic orbital electron populations 1.30289 1.26534 1.11805 1.12063 1.08101 0.78581 0.75726 0.77713 1.93619 1.79138 1.34335 1.86422 1.93597 1.79030 1.66896 1.53660 1.30259 1.05598 1.08884 1.23321 0.84018 1.21457 1.00730 0.91977 1.00646 1.21862 0.95874 1.02134 0.96464 1.20969 0.92658 0.90275 0.92026 0.88613 1.46084 1.63268 1.06167 1.22407 1.18039 0.78826 0.81929 0.86427 1.90830 1.46074 1.72791 1.29619 1.20416 1.05867 0.93750 0.96916 1.18494 0.91677 0.88667 0.88559 1.84763 1.39183 1.80536 1.24228 1.21345 0.98960 1.01114 0.93370 1.20459 0.97491 0.93958 0.95761 1.25172 0.94698 0.99421 0.99133 1.86532 1.34410 1.35362 1.77887 0.94643 0.85302 0.81023 0.79931 1.20940 1.01766 0.92871 0.99534 1.21174 0.95179 1.00045 0.91955 1.21770 1.01953 0.94968 0.97126 1.21355 0.90457 1.03221 0.99618 0.85197 0.85048 0.85077 0.90279 0.89689 0.90295 0.90291 0.76487 0.74436 0.84235 0.86535 0.77134 1.17996 1.17722 0.84615 0.84814 0.89433 0.90141 0.89309 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.01 10.17 101.05 1.03 4.04 16 2 S 2.42 -4.98 4.88 -107.50 -0.52 -5.50 16 3 O -0.94 -1.89 18.10 -57.83 -1.05 -2.94 16 4 O -0.93 -1.09 17.91 -57.83 -1.04 -2.12 16 5 C -0.57 2.40 2.58 -26.73 -0.07 2.33 16 6 H 0.14 -0.91 8.14 -51.92 -0.42 -1.33 16 7 C -0.11 0.41 4.80 -26.73 -0.13 0.28 16 8 C -0.12 0.30 5.60 -26.73 -0.15 0.15 16 9 C 0.15 -0.29 2.78 -67.94 -0.19 -0.48 16 10 H 0.10 -0.05 7.57 -51.93 -0.39 -0.44 16 11 N -0.72 1.01 4.18 -54.85 -0.23 0.78 16 12 C 0.56 0.93 7.73 -12.47 -0.10 0.83 16 13 O -0.52 -2.59 14.82 -16.58 -0.25 -2.83 16 14 C -0.17 -0.14 5.89 -104.85 -0.62 -0.76 16 15 C 0.17 0.29 6.72 -38.70 -0.26 0.03 16 16 O -0.48 -1.19 11.58 -40.54 -0.47 -1.65 16 17 C -0.13 -0.08 9.60 -39.48 -0.38 -0.46 16 18 C -0.08 0.05 5.36 -104.57 -0.56 -0.51 16 19 C -0.07 0.08 2.79 36.01 0.10 0.18 16 20 O -0.54 0.14 12.83 -35.23 -0.45 -0.31 16 21 Si 0.69 -1.30 29.78 -169.99 -5.06 -6.36 16 22 C -0.13 0.23 8.64 -39.63 -0.34 -0.12 16 23 C -0.06 0.09 9.54 -39.20 -0.37 -0.28 16 24 C -0.12 0.46 5.61 -26.75 -0.15 0.31 16 25 C -0.11 0.40 5.04 -26.75 -0.13 0.26 16 26 H 0.13 -0.81 8.14 -51.92 -0.42 -1.23 16 27 H 0.13 -0.59 8.14 -51.93 -0.42 -1.01 16 28 H 0.13 -0.79 6.87 -51.93 -0.36 -1.15 16 29 H 0.08 -0.44 6.56 -51.93 -0.34 -0.78 16 30 H 0.08 -0.25 7.52 -51.93 -0.39 -0.64 16 31 H 0.08 -0.02 8.14 -51.93 -0.42 -0.45 16 32 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 33 H 0.40 -1.30 4.89 -40.82 -0.20 -1.50 16 34 H 0.40 -0.46 9.06 45.56 0.41 -0.05 16 35 H 0.14 0.05 8.06 -52.48 -0.42 -0.37 16 36 H 0.12 -0.10 7.96 -51.93 -0.41 -0.51 16 37 H 0.38 -1.54 8.70 45.56 0.40 -1.14 16 38 H -0.26 -0.06 7.11 56.52 0.40 0.35 16 39 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 40 H 0.14 -0.52 4.88 -52.49 -0.26 -0.77 16 41 H 0.13 -0.54 6.40 -52.48 -0.34 -0.87 16 42 H 0.09 -0.40 8.14 -51.93 -0.42 -0.83 16 43 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 44 H 0.09 -0.34 8.14 -51.93 -0.42 -0.76 16 45 H 0.08 -0.31 6.50 -51.93 -0.34 -0.65 16 LS Contribution 371.24 15.07 5.59 5.59 Total: 0.00 -14.13 371.24 -11.01 -25.14 By element: Atomic # 1 Polarization: -10.38 SS G_CDS: -5.22 Total: -15.59 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -2.32 Total: 5.81 kcal Atomic # 7 Polarization: 1.01 SS G_CDS: -0.23 Total: 0.78 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -3.25 Total: -9.86 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: -5.06 Total: -6.36 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -0.52 Total: -5.50 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -14.13 -11.01 -25.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_13422076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.799 kcal (2) G-P(sol) polarization free energy of solvation -14.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds