Wall clock time and date at job start Tue Mar 9 2021 13:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42099 * 108.57810 * 2 1 4 4 O 1.42100 * 108.57707 * 228.97396 * 2 1 3 5 5 C 1.81394 * 101.91941 * 114.48226 * 2 1 3 6 6 H 1.09001 * 109.47726 * 300.00224 * 5 2 1 7 7 C 1.53008 * 109.47158 * 60.00180 * 5 2 1 8 8 C 1.52998 * 109.47052 * 179.97438 * 7 5 2 9 9 C 1.52999 * 109.47545 * 299.99991 * 8 7 5 10 10 H 1.08997 * 109.47097 * 180.02562 * 9 8 7 11 11 N 1.46497 * 109.47056 * 300.00210 * 9 8 7 12 12 C 1.34780 * 119.99944 * 274.99835 * 11 9 8 13 13 O 1.21581 * 119.99799 * 0.02562 * 12 11 9 14 14 C 1.47537 * 119.99907 * 180.02562 * 12 11 9 15 15 C 1.40133 * 120.19226 * 179.97438 * 14 12 11 16 16 O 1.35655 * 120.14989 * 0.02562 * 15 14 12 17 17 C 1.38704 * 119.70246 * 179.72605 * 15 14 12 18 18 C 1.38056 * 120.08616 * 0.27615 * 17 15 14 19 19 C 1.50702 * 119.80839 * 179.97438 * 18 17 15 20 20 O 1.42895 * 109.47287 * 64.99931 * 19 18 17 21 21 Si 1.86296 * 109.47096 * 184.99907 * 19 18 17 22 22 C 1.38552 * 120.38888 * 359.95398 * 18 17 15 23 23 C 1.37788 * 120.29635 * 0.02562 * 22 18 17 24 24 C 1.52995 * 109.47113 * 60.00077 * 9 8 7 25 25 C 1.52999 * 109.47103 * 179.97438 * 5 2 1 26 26 H 1.09005 * 109.47219 * 305.51605 * 1 2 3 27 27 H 1.08998 * 109.46990 * 65.51555 * 1 2 3 28 28 H 1.08996 * 109.47428 * 185.51508 * 1 2 3 29 29 H 1.08996 * 109.47135 * 299.99769 * 7 5 2 30 30 H 1.09001 * 109.46766 * 59.99456 * 7 5 2 31 31 H 1.09003 * 109.46941 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47391 * 60.00315 * 8 7 5 33 33 H 0.96999 * 120.00379 * 94.99775 * 11 9 8 34 34 H 0.96696 * 114.00102 * 269.72245 * 16 15 14 35 35 H 1.08004 * 119.96378 * 180.25466 * 17 15 14 36 36 H 1.09001 * 109.46963 * 304.99555 * 19 18 17 37 37 H 0.96698 * 114.00467 * 59.99848 * 20 19 18 38 38 H 1.48507 * 110.00090 * 58.67646 * 21 19 18 39 39 H 1.48498 * 110.00114 * 179.97438 * 21 19 18 40 40 H 1.07990 * 119.85203 * 180.02562 * 22 18 17 41 41 H 1.08004 * 120.04389 * 180.02562 * 23 22 18 42 42 H 1.09005 * 109.47441 * 59.99987 * 24 9 8 43 43 H 1.08996 * 109.47309 * 180.02562 * 24 9 8 44 44 H 1.09003 * 109.47078 * 60.00130 * 25 5 2 45 45 H 1.09005 * 109.46977 * 299.99920 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7355 1.6153 6 1 1.7610 -0.1169 2.4043 7 6 1.5883 -2.1410 1.6873 8 6 1.9049 -2.7616 3.0494 9 6 3.4217 -2.8450 3.2319 10 1 3.6471 -3.2876 4.2021 11 7 3.9961 -3.6763 2.1712 12 6 4.0354 -5.0162 2.3118 13 8 3.5937 -5.5349 3.3188 14 6 4.6145 -5.8533 1.2438 15 6 4.6579 -7.2467 1.3860 16 8 4.1670 -7.8329 2.5066 17 6 5.1993 -8.0244 0.3731 18 6 5.6981 -7.4266 -0.7669 19 6 6.2855 -8.2775 -1.8633 20 8 5.2619 -9.0979 -2.4298 21 14 7.0032 -7.1785 -3.1853 22 6 5.6614 -6.0489 -0.9093 23 6 5.1267 -5.2611 0.0867 24 6 4.0220 -1.4396 3.1599 25 6 3.7054 -0.8194 1.7980 26 1 -0.3634 0.5970 0.8365 27 1 -0.3633 0.4259 -0.9352 28 1 -0.3634 -1.0228 0.0988 29 1 0.5078 -2.0817 1.5569 30 1 2.0160 -2.7596 0.8982 31 1 1.4768 -3.7628 3.1009 32 1 1.4774 -2.1432 3.8387 33 1 4.3482 -3.2625 1.3677 34 1 4.8200 -7.9430 3.2112 35 1 5.2311 -9.0990 0.4765 36 1 7.0714 -8.9101 -1.4506 37 1 4.5283 -8.6006 -2.8167 38 1 8.0470 -6.2977 -2.6022 39 1 7.5863 -8.0056 -4.2721 40 1 6.0536 -5.5904 -1.8050 41 1 5.0998 -4.1876 -0.0287 42 1 3.5946 -0.8210 3.9491 43 1 5.1026 -1.4990 3.2895 44 1 4.1335 0.1817 1.7465 45 1 4.1327 -1.4384 1.0090 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_13422076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:33 Heat of formation + Delta-G solvation = -154.206149 kcal Electronic energy + Delta-G solvation = -30635.832531 eV Core-core repulsion = 26326.295131 eV Total energy + Delta-G solvation = -4309.537400 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80284 -40.56141 -39.04838 -38.33448 -37.97983 -37.13799 -37.02178 -34.95605 -32.99329 -32.09150 -31.11247 -30.91079 -30.06693 -27.44211 -24.37083 -23.92962 -23.78443 -23.43179 -21.90141 -20.37598 -19.70837 -19.52900 -18.79745 -18.19964 -17.95874 -17.38619 -16.97757 -16.79408 -16.72624 -16.32106 -16.22191 -16.19237 -15.90959 -15.43391 -15.30424 -14.96444 -14.77075 -14.64343 -14.38494 -13.98237 -13.90248 -13.85197 -13.75230 -13.43128 -13.26665 -13.23684 -13.07243 -13.01236 -12.87626 -12.55264 -12.30675 -12.21908 -12.18594 -11.94256 -11.73817 -11.69670 -11.44032 -10.92474 -10.85202 -10.50380 -10.21498 -10.01093 -9.77290 -4.97984 -0.92034 -0.41950 0.13274 1.28050 1.63797 1.73099 1.84955 1.98028 2.09220 2.56985 2.72537 3.04782 3.11466 3.42901 3.44850 3.52841 3.54762 3.69572 3.74997 3.84693 3.94825 4.06835 4.07416 4.10298 4.20886 4.25632 4.26631 4.38412 4.41397 4.46942 4.55237 4.59098 4.72009 4.76363 4.89836 4.96431 5.01748 5.02699 5.08228 5.11407 5.13437 5.18044 5.23200 5.24521 5.51619 5.58569 6.46496 6.69901 6.72651 7.17374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.413 3.587 3 O -0.987 6.987 4 O -0.976 6.976 5 C -0.554 4.554 6 H 0.172 0.828 7 C -0.114 4.114 8 C -0.121 4.121 9 C 0.140 3.860 10 H 0.077 0.923 11 N -0.711 5.711 12 C 0.557 3.443 13 O -0.560 6.560 14 C -0.180 4.180 15 C 0.154 3.846 16 O -0.496 6.496 17 C -0.139 4.139 18 C -0.073 4.073 19 C -0.082 4.082 20 O -0.555 6.555 21 Si 0.781 3.219 22 C -0.131 4.131 23 C -0.058 4.058 24 C -0.111 4.111 25 C -0.118 4.118 26 H 0.153 0.847 27 H 0.131 0.869 28 H 0.151 0.849 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.408 0.592 34 H 0.407 0.593 35 H 0.134 0.866 36 H 0.111 0.889 37 H 0.397 0.603 38 H -0.277 1.277 39 H -0.301 1.301 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.777 4.621 -0.122 4.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.602 3.398 3 O -0.984 6.984 4 O -0.973 6.973 5 C -0.665 4.665 6 H 0.189 0.811 7 C -0.152 4.152 8 C -0.161 4.161 9 C 0.036 3.964 10 H 0.095 0.905 11 N -0.365 5.365 12 C 0.345 3.655 13 O -0.439 6.439 14 C -0.184 4.184 15 C 0.108 3.892 16 O -0.309 6.309 17 C -0.158 4.158 18 C -0.074 4.074 19 C -0.191 4.191 20 O -0.363 6.363 21 Si 0.686 3.314 22 C -0.148 4.148 23 C -0.076 4.076 24 C -0.150 4.150 25 C -0.157 4.157 26 H 0.171 0.829 27 H 0.150 0.850 28 H 0.169 0.831 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.247 0.753 34 H 0.266 0.734 35 H 0.152 0.848 36 H 0.129 0.871 37 H 0.247 0.753 38 H -0.203 1.203 39 H -0.229 1.229 40 H 0.179 0.821 41 H 0.179 0.821 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.927 4.365 -0.617 4.504 hybrid contribution 0.160 -0.815 1.170 1.435 sum -0.767 3.550 0.553 3.673 Atomic orbital electron populations 1.30196 1.23000 1.13686 1.13241 1.07821 0.79713 0.74277 0.77950 1.93559 1.80873 1.36630 1.87315 1.93539 1.80593 1.67257 1.55903 1.30102 1.05509 1.08736 1.22118 0.81066 1.21529 1.02380 0.91836 0.99456 1.21824 0.95197 1.01205 0.97857 1.21071 0.93399 0.91006 0.90921 0.90503 1.46024 1.62279 1.05296 1.22861 1.18235 0.78411 0.82776 0.86048 1.90802 1.48184 1.73672 1.31248 1.20489 1.06730 0.93445 0.97697 1.18712 0.92609 0.89339 0.88584 1.84717 1.40345 1.80823 1.25028 1.21350 0.99695 1.00918 0.93850 1.20557 0.96980 0.94596 0.95265 1.25373 0.94585 0.99589 0.99567 1.86495 1.35226 1.36466 1.78088 0.93625 0.83245 0.78487 0.76080 1.21221 1.00994 0.92341 1.00240 1.21474 0.93817 1.01470 0.90847 1.21729 1.02124 0.93617 0.97498 1.21480 0.90937 1.03563 0.99718 0.82875 0.85014 0.83115 0.87863 0.90576 0.92789 0.88571 0.75292 0.73374 0.84761 0.87145 0.75307 1.20313 1.22887 0.82073 0.82097 0.88031 0.89856 0.88951 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 7.25 10.17 113.37 1.15 8.40 16 2 S 2.41 -11.23 4.88 -56.49 -0.28 -11.51 16 3 O -0.99 -4.26 18.10 -127.37 -2.30 -6.57 16 4 O -0.98 -2.49 17.91 -127.37 -2.28 -4.77 16 5 C -0.55 5.56 2.58 30.60 0.08 5.64 16 6 H 0.17 -2.71 8.14 -2.39 -0.02 -2.73 16 7 C -0.11 1.00 4.80 30.60 0.15 1.15 16 8 C -0.12 0.66 5.60 30.59 0.17 0.83 16 9 C 0.14 -0.56 2.78 44.99 0.13 -0.43 16 10 H 0.08 0.02 7.57 -2.39 -0.02 0.00 16 11 N -0.71 1.77 4.18 -445.72 -1.86 -0.10 16 12 C 0.56 2.57 7.73 86.70 0.67 3.24 16 13 O -0.56 -6.89 14.82 16.95 0.25 -6.64 16 14 C -0.18 -0.47 5.89 -20.01 -0.12 -0.59 16 15 C 0.15 0.78 6.72 22.84 0.15 0.93 16 16 O -0.50 -3.75 11.58 -68.78 -0.80 -4.55 16 17 C -0.14 -0.35 9.60 22.34 0.21 -0.14 16 18 C -0.07 0.09 5.36 -19.83 -0.11 -0.02 16 19 C -0.08 0.17 2.79 71.24 0.20 0.36 16 20 O -0.55 0.20 12.83 -148.98 -1.91 -1.71 16 21 Si 0.78 -3.38 29.78 68.60 2.04 -1.33 16 22 C -0.13 0.57 8.64 22.24 0.19 0.76 16 23 C -0.06 0.20 9.54 22.52 0.21 0.41 16 24 C -0.11 0.97 5.61 30.58 0.17 1.14 16 25 C -0.12 1.00 5.04 30.58 0.15 1.16 16 26 H 0.15 -2.38 8.14 -2.39 -0.02 -2.40 16 27 H 0.13 -1.37 8.14 -2.39 -0.02 -1.39 16 28 H 0.15 -2.24 6.87 -2.39 -0.02 -2.26 16 29 H 0.10 -1.40 6.56 -2.39 -0.02 -1.41 16 30 H 0.08 -0.50 7.52 -2.39 -0.02 -0.52 16 31 H 0.05 0.01 8.14 -2.39 -0.02 0.00 16 32 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H 0.41 -2.86 4.89 -92.71 -0.45 -3.31 16 34 H 0.41 0.26 9.06 -74.06 -0.67 -0.41 16 35 H 0.13 0.37 8.06 -2.91 -0.02 0.35 16 36 H 0.11 -0.11 7.96 -2.39 -0.02 -0.13 16 37 H 0.40 -3.33 8.70 -74.06 -0.64 -3.97 16 38 H -0.28 0.17 7.11 99.48 0.71 0.88 16 39 H -0.30 -1.17 7.11 99.48 0.71 -0.46 16 40 H 0.16 -1.58 4.88 -2.92 -0.01 -1.59 16 41 H 0.16 -1.55 6.40 -2.91 -0.02 -1.57 16 42 H 0.10 -1.13 8.14 -2.38 -0.02 -1.15 16 43 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 44 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 45 H 0.08 -0.70 6.50 -2.38 -0.02 -0.71 16 Total: 0.00 -35.17 371.24 -4.39 -39.56 By element: Atomic # 1 Polarization: -24.57 SS G_CDS: -0.67 Total: -25.24 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 3.42 Total: 22.85 kcal Atomic # 7 Polarization: 1.77 SS G_CDS: -1.86 Total: -0.10 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -7.04 Total: -24.23 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: 2.04 Total: -1.33 kcal Atomic # 16 Polarization: -11.23 SS G_CDS: -0.28 Total: -11.51 kcal Total: -35.17 -4.39 -39.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_13422076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.645 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds