Wall clock time and date at job start Tue Mar 9 2021 13:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99954 * 2 1 4 4 C 1.39042 * 110.99944 * 123.95523 * 2 1 3 5 5 C 1.39199 * 119.93377 * 119.98493 * 4 2 1 6 6 C 1.50696 * 119.96358 * 0.02562 * 5 4 2 7 7 O 1.42905 * 109.47177 * 285.00525 * 6 5 4 8 8 Si 1.86304 * 109.47261 * 165.00500 * 6 5 4 9 9 C 1.37630 * 120.07016 * 179.73928 * 5 4 2 10 10 C 1.39775 * 119.92878 * 0.55489 * 9 5 4 11 11 C 1.47524 * 120.06968 * 179.72108 * 10 9 5 12 12 O 1.21593 * 119.99609 * 359.72312 * 11 10 9 13 13 N 1.34768 * 120.00078 * 179.72172 * 11 10 9 14 14 C 1.46500 * 120.00159 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47029 * 34.99776 * 14 13 11 16 16 C 1.52996 * 109.47667 * 155.00076 * 14 13 11 17 17 C 1.53002 * 109.47122 * 59.99606 * 16 14 13 18 18 C 1.53003 * 109.47009 * 60.00560 * 17 16 14 19 19 H 1.09005 * 109.47062 * 59.99762 * 18 17 16 20 20 S 1.81393 * 109.47289 * 179.97438 * 18 17 16 21 21 C 1.81404 * 101.92151 * 179.97438 * 20 18 17 22 22 O 1.42099 * 108.57770 * 65.51505 * 20 18 17 23 23 O 1.42093 * 108.58136 * 294.48631 * 20 18 17 24 24 C 1.53002 * 109.46896 * 300.00162 * 18 17 16 25 25 C 1.52998 * 109.47615 * 59.99787 * 24 18 17 26 26 C 1.39816 * 119.86187 * 359.43804 * 10 9 5 27 27 C 1.37586 * 119.93098 * 0.28558 * 26 10 9 28 28 H 1.08993 * 109.47429 * 296.04378 * 1 2 3 29 29 H 1.09005 * 109.47633 * 56.05059 * 1 2 3 30 30 H 1.09004 * 109.47251 * 176.04612 * 1 2 3 31 31 H 1.08997 * 109.47145 * 183.95682 * 3 2 1 32 32 H 1.09004 * 109.46880 * 303.95839 * 3 2 1 33 33 H 1.08995 * 109.47003 * 63.95119 * 3 2 1 34 34 H 1.08996 * 109.47441 * 45.00267 * 6 5 4 35 35 H 0.96699 * 113.99690 * 299.99473 * 7 6 5 36 36 H 1.48495 * 109.99809 * 58.68072 * 8 6 5 37 37 H 1.48498 * 110.00106 * 179.97438 * 8 6 5 38 38 H 1.08002 * 120.03495 * 180.29300 * 9 5 4 39 39 H 0.97005 * 120.00395 * 359.97438 * 13 11 10 40 40 H 1.08997 * 109.46995 * 300.00015 * 16 14 13 41 41 H 1.08995 * 109.47405 * 180.02562 * 16 14 13 42 42 H 1.08995 * 109.47371 * 300.00499 * 17 16 14 43 43 H 1.08998 * 109.47487 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.47124 * 60.00027 * 21 20 18 45 45 H 1.09001 * 109.46975 * 300.00148 * 21 20 18 46 46 H 1.09004 * 109.47147 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.47169 * 179.97438 * 24 18 17 48 48 H 1.09005 * 109.46938 * 299.99676 * 24 18 17 49 49 H 1.08998 * 109.47678 * 180.02562 * 25 24 18 50 50 H 1.09005 * 109.47058 * 59.99963 * 25 24 18 51 51 H 1.08001 * 120.03285 * 180.25330 * 26 10 9 52 52 H 1.08002 * 119.96649 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9672 -0.7250 1.0767 5 6 2.7790 -1.8332 0.8518 6 6 3.1169 -2.2450 -0.5579 7 8 1.9816 -2.8746 -1.1553 8 14 4.5464 -3.4394 -0.5302 9 6 3.2781 -2.5497 1.9156 10 6 2.9596 -2.1705 3.2227 11 6 3.4879 -2.9400 4.3651 12 8 4.1971 -3.9082 4.1700 13 7 3.1845 -2.5697 5.6249 14 6 3.7087 -3.3342 6.7595 15 1 4.7081 -3.6981 6.5216 16 6 3.7744 -2.4337 7.9946 17 6 2.3714 -1.9227 8.3285 18 6 1.4501 -3.1108 8.6121 19 1 1.8401 -3.6797 9.4562 20 16 -0.2131 -2.5051 9.0087 21 6 -1.1151 -4.0515 9.3017 22 8 -0.7539 -1.8780 7.8539 23 8 -0.1515 -1.7784 10.2282 24 6 1.3844 -4.0115 7.3770 25 6 2.7873 -4.5224 7.0430 26 6 2.1442 -1.0568 3.4453 27 6 1.6530 -0.3412 2.3778 28 1 -0.3634 0.4512 0.9232 29 1 -0.3634 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9163 -0.8524 33 1 1.7043 1.8723 0.9232 34 1 3.3908 -1.3639 -1.1380 35 1 1.6818 -3.6678 -0.6905 36 1 4.1969 -4.6310 0.2841 37 1 4.8890 -3.8537 -1.9145 38 1 3.9117 -3.4067 1.7406 39 1 2.6191 -1.7970 5.7806 40 1 4.4308 -1.5872 7.7926 41 1 4.1648 -3.0023 8.8385 42 1 1.9814 -1.3539 7.4844 43 1 2.4183 -1.2808 9.2081 44 1 -0.6496 -4.5932 10.1251 45 1 -1.0868 -4.6648 8.4011 46 1 -2.1511 -3.8255 9.5545 47 1 0.7284 -4.8581 7.5792 48 1 0.9944 -3.4426 6.5329 49 1 2.7406 -5.1636 6.1629 50 1 3.1774 -5.0912 7.8872 51 1 1.8997 -0.7589 4.4542 52 1 1.0227 0.5189 2.5491 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_13422196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:42 Heat of formation + Delta-G solvation = -93.322841 kcal Electronic energy + Delta-G solvation = -34945.348732 eV Core-core repulsion = 30425.094855 eV Total energy + Delta-G solvation = -4520.253878 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.165 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.83565 -40.87899 -39.20694 -38.02612 -37.92602 -37.23389 -37.06110 -35.05778 -32.94399 -32.11661 -31.74093 -30.63826 -30.07146 -28.52708 -26.91732 -26.23925 -24.14961 -23.82810 -23.37303 -22.84102 -21.51198 -20.38368 -19.74073 -19.29893 -18.05233 -17.92355 -17.67321 -17.38766 -17.00256 -16.76966 -16.61401 -16.36236 -16.30166 -16.07974 -15.74924 -15.58704 -15.30572 -15.08398 -14.89982 -14.74457 -14.64901 -14.17357 -14.01339 -13.97680 -13.92941 -13.80539 -13.50597 -13.44003 -13.26570 -13.12796 -13.10702 -13.05241 -12.98875 -12.66088 -12.62369 -12.57004 -12.23458 -12.16320 -11.97741 -11.83983 -11.76605 -11.46357 -11.08471 -10.87709 -10.56846 -10.20419 -10.13104 -9.77650 -9.49628 -4.97988 -0.95454 -0.38404 0.13837 1.27257 1.54537 1.66048 1.81774 1.88852 2.07138 2.62664 2.69395 2.80314 3.01449 3.41689 3.43954 3.50345 3.56231 3.64107 3.77751 3.81219 3.93214 4.02857 4.04692 4.07126 4.13768 4.19117 4.23352 4.24112 4.38421 4.39195 4.43950 4.46826 4.53425 4.54438 4.60859 4.67440 4.71520 4.78603 4.87075 4.95182 4.98023 4.99670 5.00265 5.04471 5.07058 5.09960 5.11723 5.15329 5.23043 5.26034 5.47611 5.56021 5.85803 6.29066 6.42344 6.52073 7.11157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.521 5.521 3 C 0.024 3.976 4 C 0.141 3.859 5 C -0.109 4.109 6 C -0.049 4.049 7 O -0.533 6.533 8 Si 0.740 3.260 9 C -0.065 4.065 10 C -0.149 4.149 11 C 0.560 3.440 12 O -0.573 6.573 13 N -0.709 5.709 14 C 0.138 3.862 15 H 0.081 0.919 16 C -0.111 4.111 17 C -0.119 4.119 18 C -0.552 4.552 19 H 0.173 0.827 20 S 2.412 3.588 21 C -0.649 4.649 22 O -0.979 6.979 23 O -0.986 6.986 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.060 4.060 27 C -0.157 4.157 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.124 0.876 35 H 0.379 0.621 36 H -0.290 1.290 37 H -0.293 1.293 38 H 0.134 0.866 39 H 0.408 0.592 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.154 0.846 45 H 0.150 0.850 46 H 0.131 0.869 47 H 0.103 0.897 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.098 0.902 51 H 0.151 0.849 52 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.017 0.808 4.480 4.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.242 5.242 3 C -0.122 4.122 4 C 0.046 3.954 5 C -0.111 4.111 6 C -0.159 4.159 7 O -0.340 6.340 8 Si 0.646 3.354 9 C -0.084 4.084 10 C -0.152 4.152 11 C 0.348 3.652 12 O -0.454 6.454 13 N -0.362 5.362 14 C 0.034 3.966 15 H 0.099 0.901 16 C -0.150 4.150 17 C -0.157 4.157 18 C -0.663 4.663 19 H 0.191 0.809 20 S 2.602 3.398 21 C -0.801 4.801 22 O -0.977 6.977 23 O -0.984 6.984 24 C -0.153 4.153 25 C -0.161 4.161 26 C -0.079 4.079 27 C -0.177 4.177 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.142 0.858 35 H 0.227 0.773 36 H -0.218 1.218 37 H -0.221 1.221 38 H 0.151 0.849 39 H 0.247 0.753 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.173 0.827 45 H 0.168 0.832 46 H 0.149 0.851 47 H 0.122 0.878 48 H 0.092 0.908 49 H 0.074 0.926 50 H 0.116 0.884 51 H 0.169 0.831 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.653 0.538 3.374 3.478 hybrid contribution -1.413 -0.675 0.643 1.693 sum -0.760 -0.138 4.017 4.090 Atomic orbital electron populations 1.22437 0.84738 1.02578 1.01717 1.59397 1.09370 1.14994 1.40448 1.22553 1.01311 0.86339 1.01956 1.18945 0.94002 0.93097 0.89375 1.20139 0.99291 0.95958 0.95662 1.24801 0.95553 1.03995 0.91598 1.86631 1.46969 1.44996 1.55386 0.94330 0.83462 0.79694 0.77896 1.21183 0.97270 0.98623 0.91332 1.19882 1.03248 0.98839 0.93192 1.18319 0.79618 0.83500 0.83737 1.90786 1.39403 1.29278 1.85915 1.46036 1.52450 1.32913 1.04813 1.21125 0.98007 0.92185 0.85285 0.90096 1.21739 0.95953 1.00205 0.97066 1.21483 0.95605 0.95067 1.03553 1.30090 1.19195 1.07866 1.09196 0.80895 1.07840 0.79208 0.78925 0.73866 1.30191 1.14991 1.20815 1.14068 1.93537 1.78052 1.74654 1.51428 1.93558 1.86962 1.70772 1.47064 1.21535 0.99437 0.99297 0.94996 1.21839 0.94524 0.97142 1.02588 1.21395 0.93746 0.92395 1.00375 1.21834 1.01791 1.01592 0.92434 0.94166 0.89967 0.91983 0.90782 0.89856 0.94131 0.85784 0.77281 1.21771 1.22083 0.84874 0.75283 0.89763 0.87867 0.90665 0.88962 0.82748 0.83154 0.85091 0.87842 0.90789 0.92552 0.88376 0.83129 0.83684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 9.34 127.69 1.19 1.17 16 2 N -0.52 -0.42 4.20 -745.12 -3.13 -3.55 16 3 C 0.02 -0.07 9.38 127.69 1.20 1.13 16 4 C 0.14 0.19 4.70 38.47 0.18 0.37 16 5 C -0.11 -0.28 5.28 -19.78 -0.10 -0.39 16 6 C -0.05 -0.14 2.33 71.23 0.17 0.03 16 7 O -0.53 -2.72 12.88 -148.98 -1.92 -4.64 16 8 Si 0.74 2.13 30.23 68.60 2.07 4.20 16 9 C -0.06 -0.25 8.19 22.50 0.18 -0.07 16 10 C -0.15 -0.35 5.88 -20.08 -0.12 -0.47 16 11 C 0.56 2.31 7.73 86.69 0.67 2.98 16 12 O -0.57 -6.71 16.00 -4.01 -0.06 -6.77 16 13 N -0.71 1.80 4.18 -445.72 -1.86 -0.07 16 14 C 0.14 -0.60 2.78 44.99 0.13 -0.47 16 15 H 0.08 -0.04 7.58 -2.39 -0.02 -0.06 16 16 C -0.11 0.98 5.61 30.59 0.17 1.16 16 17 C -0.12 0.97 5.04 30.60 0.15 1.13 16 18 C -0.55 5.47 2.58 30.60 0.08 5.54 16 19 H 0.17 -2.76 8.14 -2.39 -0.02 -2.78 16 20 S 2.41 -10.02 4.88 -56.49 -0.28 -10.29 16 21 C -0.65 7.02 10.17 113.37 1.15 8.17 16 22 O -0.98 -3.51 17.91 -127.37 -2.28 -5.79 16 23 O -0.99 -4.69 18.10 -127.37 -2.30 -7.00 16 24 C -0.11 1.01 4.80 30.59 0.15 1.16 16 25 C -0.12 0.73 5.60 30.60 0.17 0.90 16 26 C -0.06 0.12 9.53 22.50 0.21 0.33 16 27 C -0.16 0.22 8.53 22.36 0.19 0.42 16 28 H 0.04 -0.11 7.10 -2.39 -0.02 -0.13 16 29 H 0.08 -0.17 8.12 -2.38 -0.02 -0.19 16 30 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.08 -0.33 8.12 -2.38 -0.02 -0.35 16 33 H 0.04 -0.17 7.32 -2.39 -0.02 -0.19 16 34 H 0.12 0.29 7.78 -2.39 -0.02 0.27 16 35 H 0.38 0.04 8.70 -74.06 -0.64 -0.60 16 36 H -0.29 -2.39 6.69 99.48 0.67 -1.73 16 37 H -0.29 -2.70 7.11 99.48 0.71 -2.00 16 38 H 0.13 0.77 4.43 -2.91 -0.01 0.76 16 39 H 0.41 -2.66 4.88 -92.70 -0.45 -3.12 16 40 H 0.08 -0.76 8.14 -2.39 -0.02 -0.78 16 41 H 0.10 -1.18 8.14 -2.39 -0.02 -1.20 16 42 H 0.07 -0.62 6.50 -2.39 -0.02 -0.63 16 43 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 44 H 0.15 -2.38 8.14 -2.39 -0.02 -2.40 16 45 H 0.15 -2.19 6.87 -2.39 -0.02 -2.20 16 46 H 0.13 -1.29 8.14 -2.39 -0.02 -1.31 16 47 H 0.10 -1.41 6.56 -2.39 -0.02 -1.42 16 48 H 0.07 -0.46 7.52 -2.38 -0.02 -0.48 16 49 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 50 H 0.10 -0.94 8.14 -2.38 -0.02 -0.96 16 51 H 0.15 -1.11 6.39 -2.91 -0.02 -1.13 16 52 H 0.15 -0.66 6.99 -2.91 -0.02 -0.68 16 Total: 0.00 -31.02 415.89 -4.14 -35.15 By element: Atomic # 1 Polarization: -24.19 SS G_CDS: -0.15 Total: -24.33 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: 5.77 Total: 23.08 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -4.99 Total: -3.61 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -6.57 Total: -24.21 kcal Atomic # 14 Polarization: 2.13 SS G_CDS: 2.07 Total: 4.20 kcal Atomic # 16 Polarization: -10.02 SS G_CDS: -0.28 Total: -10.29 kcal Total: -31.02 -4.14 -35.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_13422196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.168 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds