Wall clock time and date at job start Tue Mar 9 2021 13:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42097 * 108.57684 * 2 1 4 4 O 1.42102 * 108.57705 * 228.97017 * 2 1 3 5 5 C 1.81399 * 101.92079 * 114.48436 * 2 1 3 6 6 H 1.09004 * 109.47568 * 64.99966 * 5 2 1 7 7 C 1.53002 * 109.47162 * 185.00187 * 5 2 1 8 8 C 1.53006 * 109.46974 * 179.97438 * 7 5 2 9 9 C 1.52997 * 109.47164 * 299.99898 * 8 7 5 10 10 H 1.09002 * 109.47045 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47012 * 300.00256 * 9 8 7 12 12 C 1.34778 * 119.99771 * 205.00267 * 11 9 8 13 13 O 1.21282 * 120.00194 * 0.02562 * 12 11 9 14 14 C 1.50703 * 119.99935 * 179.97438 * 12 11 9 15 15 C 1.53543 * 109.82194 * 79.99780 * 14 12 11 16 16 C 1.53030 * 108.56066 * 180.48747 * 15 14 12 17 17 C 1.50197 * 110.32098 * 310.42676 * 16 15 14 18 18 C 1.50703 * 118.55092 * 200.02717 * 17 16 15 19 19 O 1.42899 * 109.47403 * 300.00373 * 18 17 16 20 20 Si 1.86299 * 109.47431 * 180.02562 * 18 17 16 21 21 C 1.31117 * 122.90729 * 20.05729 * 17 16 15 22 22 N 1.38925 * 121.84601 * 359.58812 * 21 17 16 23 23 C 1.53002 * 109.47092 * 60.00174 * 9 8 7 24 24 C 1.52996 * 109.46969 * 299.99940 * 23 9 8 25 25 H 1.08999 * 109.47161 * 305.51773 * 1 2 3 26 26 H 1.08999 * 109.46959 * 65.52038 * 1 2 3 27 27 H 1.09004 * 109.47050 * 185.51543 * 1 2 3 28 28 H 1.09000 * 109.46497 * 299.99702 * 7 5 2 29 29 H 1.08996 * 109.46876 * 60.00092 * 7 5 2 30 30 H 1.09000 * 109.47050 * 59.99902 * 8 7 5 31 31 H 1.08998 * 109.46509 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00057 * 24.99502 * 11 9 8 33 33 H 1.09000 * 109.81610 * 319.13774 * 14 12 11 34 34 H 1.08996 * 109.61915 * 300.21402 * 15 14 12 35 35 H 1.08999 * 109.61931 * 60.76465 * 15 14 12 36 36 H 1.08998 * 109.33113 * 70.69178 * 16 15 14 37 37 H 1.09009 * 109.32845 * 190.17061 * 16 15 14 38 38 H 1.09003 * 109.46581 * 60.00743 * 18 17 16 39 39 H 0.96696 * 114.00107 * 300.00275 * 19 18 17 40 40 H 1.48504 * 110.00022 * 58.68384 * 20 18 17 41 41 H 1.48491 * 110.00192 * 180.02562 * 20 18 17 42 42 H 1.08005 * 119.08051 * 179.61519 * 21 17 16 43 43 H 0.96997 * 120.56037 * 193.34161 * 22 21 17 44 44 H 1.09000 * 109.47312 * 59.99880 * 23 9 8 45 45 H 1.09000 * 109.46497 * 180.02562 * 23 9 8 46 46 H 1.09000 * 109.47054 * 300.00097 * 24 23 9 47 47 H 1.09001 * 109.46997 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.8388 -1.7678 1.6345 7 6 3.7001 -0.7049 1.8514 8 6 4.0160 -1.3248 3.2141 9 6 3.3119 -0.5266 4.3131 10 1 3.5373 -0.9679 5.2839 11 7 3.7822 0.8606 4.2867 12 6 3.7229 1.6136 5.4030 13 8 3.2806 1.1427 6.4294 14 6 4.2073 3.0404 5.3760 15 6 3.1295 3.9446 4.7608 16 6 3.6551 5.3816 4.7363 17 6 4.2009 5.7604 6.0834 18 6 4.3417 7.2230 6.4182 19 8 5.2234 7.8436 5.4804 20 14 5.0378 7.4025 8.1368 21 6 4.5609 4.8748 6.9807 22 7 4.4532 3.5095 6.7476 23 6 1.8005 -0.5572 4.0770 24 6 1.4846 0.0626 2.7143 25 1 -0.3633 0.5970 0.8364 26 1 -0.3633 0.4258 -0.9353 27 1 -0.3633 -1.0230 0.0988 28 1 4.2017 -1.2733 1.0682 29 1 4.0499 0.3272 1.8323 30 1 3.6661 -2.3569 3.2337 31 1 5.0928 -1.3033 3.3821 32 1 4.1364 1.2371 3.4659 33 1 5.1245 3.1083 4.7911 34 1 2.9132 3.6165 3.7441 35 1 2.2232 3.8965 5.3644 36 1 4.4456 5.4640 3.9905 37 1 2.8423 6.0586 4.4731 38 1 3.3639 7.7024 6.3700 39 1 6.1137 7.4666 5.4687 40 1 6.3567 6.7255 8.2239 41 1 5.1809 8.8403 8.4793 42 1 4.9518 5.2162 7.9279 43 1 4.5385 2.8763 7.4775 44 1 1.4505 -1.5893 4.0966 45 1 1.2990 0.0119 4.8597 46 1 1.8345 1.0947 2.6948 47 1 0.4078 0.0412 2.5463 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14783808_15413834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:08 Heat of formation + Delta-G solvation = -115.935418 kcal Electronic energy + Delta-G solvation = -29764.550200 eV Core-core repulsion = 25655.305667 eV Total energy + Delta-G solvation = -4109.244533 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -41.73999 -40.25196 -39.01301 -38.07182 -37.39231 -37.11427 -35.15013 -33.21145 -33.18805 -32.45070 -31.28473 -30.41409 -27.49164 -25.41832 -24.41551 -24.12404 -23.74106 -22.20739 -20.61177 -19.91349 -19.45932 -19.17339 -18.28143 -18.09503 -17.42846 -17.16583 -17.00482 -16.68716 -16.52007 -16.15950 -15.98131 -15.85085 -15.28764 -15.21271 -15.03702 -14.98699 -14.47668 -14.35804 -14.27118 -14.17440 -13.96863 -13.87704 -13.67816 -13.53408 -13.17226 -13.07694 -13.00283 -12.89944 -12.75832 -12.54995 -12.26973 -12.16060 -12.09744 -11.97387 -11.74107 -11.62712 -11.28832 -11.11681 -10.86717 -10.27778 -10.25448 -8.47533 -4.88317 -1.16616 1.29764 1.42007 1.49553 1.56324 1.63932 1.80893 2.05988 2.46811 2.59166 2.78499 3.10681 3.19376 3.41027 3.51296 3.54811 3.63067 3.68036 3.72671 3.77221 3.81962 3.87159 3.89283 3.96016 4.06248 4.12305 4.20300 4.27770 4.36531 4.40217 4.50122 4.58803 4.61965 4.70399 4.72630 4.72977 4.76641 4.77807 4.84961 4.94901 4.99800 5.19437 5.27037 5.31367 5.54393 6.16824 6.33986 6.61221 6.81020 7.01918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.417 3.583 3 O -0.934 6.934 4 O -0.938 6.938 5 C -0.572 4.572 6 H 0.142 0.858 7 C -0.108 4.108 8 C -0.119 4.119 9 C 0.144 3.856 10 H 0.096 0.904 11 N -0.722 5.722 12 C 0.514 3.486 13 O -0.529 6.529 14 C 0.135 3.865 15 C -0.128 4.128 16 C -0.051 4.051 17 C -0.278 4.278 18 C -0.049 4.049 19 O -0.536 6.536 20 Si 0.665 3.335 21 C 0.142 3.858 22 N -0.731 5.731 23 C -0.123 4.123 24 C -0.111 4.111 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.403 0.597 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.372 0.628 40 H -0.264 1.264 41 H -0.261 1.261 42 H 0.133 0.867 43 H 0.409 0.591 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 -4.009 0.971 4.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.600 3.400 3 O -0.932 6.932 4 O -0.935 6.935 5 C -0.681 4.681 6 H 0.160 0.840 7 C -0.147 4.147 8 C -0.158 4.158 9 C 0.039 3.961 10 H 0.114 0.886 11 N -0.376 5.376 12 C 0.300 3.700 13 O -0.405 6.405 14 C 0.025 3.975 15 C -0.166 4.166 16 C -0.088 4.088 17 C -0.288 4.288 18 C -0.161 4.161 19 O -0.342 6.342 20 Si 0.567 3.433 21 C 0.022 3.978 22 N -0.365 5.365 23 C -0.163 4.163 24 C -0.149 4.149 25 H 0.149 0.851 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.239 0.761 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.219 0.781 40 H -0.189 1.189 41 H -0.186 1.186 42 H 0.150 0.850 43 H 0.246 0.754 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.922 -3.422 1.278 4.128 hybrid contribution 0.385 -0.458 -0.448 0.748 sum -1.537 -3.880 0.830 4.255 Atomic orbital electron populations 1.30302 1.26556 1.11782 1.12087 1.08088 0.78558 0.75996 0.77405 1.93601 1.79024 1.34195 1.86336 1.93622 1.79134 1.67077 1.53688 1.30263 1.05298 1.12794 1.19715 0.83996 1.21361 0.90547 1.03012 0.99747 1.21771 1.01389 1.00055 0.92585 1.20998 0.93531 0.81253 1.00269 0.88646 1.46120 1.65059 1.13285 1.13100 1.20609 0.78238 0.87616 0.83564 1.90734 1.45094 1.73281 1.31362 1.21007 0.99491 0.90649 0.86315 1.21890 0.97764 0.95703 1.01285 1.19901 1.00215 0.94327 0.94336 1.20927 1.13646 0.94627 0.99601 1.24716 0.97657 0.91472 1.02206 1.86570 1.25286 1.61875 1.60427 0.95511 0.85190 0.82119 0.80454 1.20352 0.96366 0.83289 0.97819 1.44263 1.80016 1.04600 1.07585 1.21855 0.95918 1.02189 0.96312 1.21483 0.99950 0.99572 0.93894 0.85069 0.85039 0.85185 0.89446 0.90289 0.89455 0.90126 0.76148 0.89295 0.90169 0.90380 0.91526 0.90624 0.87286 0.78103 1.18926 1.18587 0.85015 0.75394 0.90236 0.90384 0.89796 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.15 10.01 101.05 1.01 4.16 16 2 S 2.42 -5.35 4.90 -107.50 -0.53 -5.87 16 3 O -0.93 -1.08 18.06 -57.83 -1.04 -2.12 16 4 O -0.94 -1.94 18.10 -57.83 -1.05 -2.98 16 5 C -0.57 2.63 2.62 -26.73 -0.07 2.56 16 6 H 0.14 -0.94 8.14 -51.92 -0.42 -1.36 16 7 C -0.11 0.43 5.03 -26.73 -0.13 0.30 16 8 C -0.12 0.52 5.61 -26.73 -0.15 0.37 16 9 C 0.14 -0.43 2.78 -67.93 -0.19 -0.62 16 10 H 0.10 -0.13 7.58 -51.93 -0.39 -0.52 16 11 N -0.72 2.01 4.23 -53.80 -0.23 1.79 16 12 C 0.51 -0.21 7.06 -10.98 -0.08 -0.29 16 13 O -0.53 -1.61 15.72 5.56 0.09 -1.52 16 14 C 0.13 -0.16 3.36 -68.51 -0.23 -0.39 16 15 C -0.13 0.16 5.47 -26.43 -0.14 0.02 16 16 C -0.05 0.02 5.74 -28.11 -0.16 -0.15 16 17 C -0.28 0.01 5.44 -101.34 -0.55 -0.55 16 18 C -0.05 -0.02 2.83 36.01 0.10 0.09 16 19 O -0.54 -1.01 12.78 -35.23 -0.45 -1.46 16 20 Si 0.66 -0.22 29.68 -169.99 -5.05 -5.26 16 21 C 0.14 -0.07 9.63 -16.08 -0.15 -0.22 16 22 N -0.73 0.24 5.47 -55.34 -0.30 -0.06 16 23 C -0.12 0.42 5.60 -26.73 -0.15 0.27 16 24 C -0.11 0.51 4.75 -26.73 -0.13 0.38 16 25 H 0.13 -0.84 6.77 -51.92 -0.35 -1.19 16 26 H 0.13 -0.60 8.14 -51.92 -0.42 -1.03 16 27 H 0.13 -0.84 8.14 -51.92 -0.42 -1.26 16 28 H 0.09 -0.35 8.14 -51.93 -0.42 -0.77 16 29 H 0.08 -0.34 6.50 -51.93 -0.34 -0.68 16 30 H 0.09 -0.43 8.14 -51.93 -0.42 -0.86 16 31 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 32 H 0.40 -1.77 6.87 -40.82 -0.28 -2.05 16 33 H 0.09 -0.20 8.14 -51.93 -0.42 -0.62 16 34 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 35 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 36 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 37 H 0.08 0.00 8.14 -51.92 -0.42 -0.42 16 38 H 0.11 0.01 7.96 -51.93 -0.41 -0.40 16 39 H 0.37 -0.34 8.70 45.56 0.40 0.06 16 40 H -0.26 -0.41 7.10 56.52 0.40 -0.01 16 41 H -0.26 -0.87 7.11 56.52 0.40 -0.47 16 42 H 0.13 -0.24 4.36 -52.48 -0.23 -0.47 16 43 H 0.41 -0.10 8.08 -40.82 -0.33 -0.43 16 44 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 45 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 46 H 0.08 -0.35 7.60 -51.93 -0.39 -0.74 16 47 H 0.08 -0.51 6.39 -51.93 -0.33 -0.84 16 LS Contribution 375.76 15.07 5.66 5.66 Total: 0.00 -12.26 375.76 -11.28 -23.54 By element: Atomic # 1 Polarization: -10.30 SS G_CDS: -7.36 Total: -17.66 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -1.03 Total: 5.94 kcal Atomic # 7 Polarization: 2.26 SS G_CDS: -0.53 Total: 1.73 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -2.45 Total: -8.08 kcal Atomic # 14 Polarization: -0.22 SS G_CDS: -5.05 Total: -5.26 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -0.53 Total: -5.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -12.26 -11.28 -23.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_15413834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.396 kcal (2) G-P(sol) polarization free energy of solvation -12.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds