Wall clock time and date at job start Tue Mar 9 2021 13:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42097 * 108.57684 * 2 1 4 4 O 1.42102 * 108.57705 * 228.97017 * 2 1 3 5 5 C 1.81399 * 101.92079 * 114.48436 * 2 1 3 6 6 H 1.09004 * 109.47568 * 64.99966 * 5 2 1 7 7 C 1.53002 * 109.47162 * 185.00187 * 5 2 1 8 8 C 1.53006 * 109.46974 * 179.97438 * 7 5 2 9 9 C 1.52997 * 109.47164 * 299.99898 * 8 7 5 10 10 H 1.09002 * 109.47045 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47012 * 300.00256 * 9 8 7 12 12 C 1.34778 * 119.99771 * 205.00267 * 11 9 8 13 13 O 1.21282 * 120.00194 * 0.02562 * 12 11 9 14 14 C 1.50703 * 119.99935 * 179.97438 * 12 11 9 15 15 C 1.53543 * 109.82194 * 79.99780 * 14 12 11 16 16 C 1.53030 * 108.56066 * 180.48747 * 15 14 12 17 17 C 1.50197 * 110.32098 * 310.42676 * 16 15 14 18 18 C 1.50703 * 118.55092 * 200.02717 * 17 16 15 19 19 O 1.42899 * 109.47403 * 300.00373 * 18 17 16 20 20 Si 1.86299 * 109.47431 * 180.02562 * 18 17 16 21 21 C 1.31117 * 122.90729 * 20.05729 * 17 16 15 22 22 N 1.38925 * 121.84601 * 359.58812 * 21 17 16 23 23 C 1.53002 * 109.47092 * 60.00174 * 9 8 7 24 24 C 1.52996 * 109.46969 * 299.99940 * 23 9 8 25 25 H 1.08999 * 109.47161 * 305.51773 * 1 2 3 26 26 H 1.08999 * 109.46959 * 65.52038 * 1 2 3 27 27 H 1.09004 * 109.47050 * 185.51543 * 1 2 3 28 28 H 1.09000 * 109.46497 * 299.99702 * 7 5 2 29 29 H 1.08996 * 109.46876 * 60.00092 * 7 5 2 30 30 H 1.09000 * 109.47050 * 59.99902 * 8 7 5 31 31 H 1.08998 * 109.46509 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00057 * 24.99502 * 11 9 8 33 33 H 1.09000 * 109.81610 * 319.13774 * 14 12 11 34 34 H 1.08996 * 109.61915 * 300.21402 * 15 14 12 35 35 H 1.08999 * 109.61931 * 60.76465 * 15 14 12 36 36 H 1.08998 * 109.33113 * 70.69178 * 16 15 14 37 37 H 1.09009 * 109.32845 * 190.17061 * 16 15 14 38 38 H 1.09003 * 109.46581 * 60.00743 * 18 17 16 39 39 H 0.96696 * 114.00107 * 300.00275 * 19 18 17 40 40 H 1.48504 * 110.00022 * 58.68384 * 20 18 17 41 41 H 1.48491 * 110.00192 * 180.02562 * 20 18 17 42 42 H 1.08005 * 119.08051 * 179.61519 * 21 17 16 43 43 H 0.96997 * 120.56037 * 193.34161 * 22 21 17 44 44 H 1.09000 * 109.47312 * 59.99880 * 23 9 8 45 45 H 1.09000 * 109.46497 * 180.02562 * 23 9 8 46 46 H 1.09000 * 109.47054 * 300.00097 * 24 23 9 47 47 H 1.09001 * 109.46997 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.8388 -1.7678 1.6345 7 6 3.7001 -0.7049 1.8514 8 6 4.0160 -1.3248 3.2141 9 6 3.3119 -0.5266 4.3131 10 1 3.5373 -0.9679 5.2839 11 7 3.7822 0.8606 4.2867 12 6 3.7229 1.6136 5.4030 13 8 3.2806 1.1427 6.4294 14 6 4.2073 3.0404 5.3760 15 6 3.1295 3.9446 4.7608 16 6 3.6551 5.3816 4.7363 17 6 4.2009 5.7604 6.0834 18 6 4.3417 7.2230 6.4182 19 8 5.2234 7.8436 5.4804 20 14 5.0378 7.4025 8.1368 21 6 4.5609 4.8748 6.9807 22 7 4.4532 3.5095 6.7476 23 6 1.8005 -0.5572 4.0770 24 6 1.4846 0.0626 2.7143 25 1 -0.3633 0.5970 0.8364 26 1 -0.3633 0.4258 -0.9353 27 1 -0.3633 -1.0230 0.0988 28 1 4.2017 -1.2733 1.0682 29 1 4.0499 0.3272 1.8323 30 1 3.6661 -2.3569 3.2337 31 1 5.0928 -1.3033 3.3821 32 1 4.1364 1.2371 3.4659 33 1 5.1245 3.1083 4.7911 34 1 2.9132 3.6165 3.7441 35 1 2.2232 3.8965 5.3644 36 1 4.4456 5.4640 3.9905 37 1 2.8423 6.0586 4.4731 38 1 3.3639 7.7024 6.3700 39 1 6.1137 7.4666 5.4687 40 1 6.3567 6.7255 8.2239 41 1 5.1809 8.8403 8.4793 42 1 4.9518 5.2162 7.9279 43 1 4.5385 2.8763 7.4775 44 1 1.4505 -1.5893 4.0966 45 1 1.2990 0.0119 4.8597 46 1 1.8345 1.0947 2.6948 47 1 0.4078 0.0412 2.5463 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_15413834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:07 Heat of formation + Delta-G solvation = -122.918958 kcal Electronic energy + Delta-G solvation = -29764.853029 eV Core-core repulsion = 25655.305667 eV Total energy + Delta-G solvation = -4109.547362 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.64232 -40.11437 -38.94647 -38.00590 -37.44446 -37.04429 -35.01425 -33.18811 -33.12160 -32.12911 -31.07049 -30.06748 -27.45562 -25.39306 -24.20187 -23.80100 -23.64502 -22.08767 -20.40855 -19.72603 -19.42230 -19.10696 -18.17458 -17.95642 -17.28291 -17.01394 -16.95317 -16.58480 -16.40784 -16.08316 -15.90364 -15.76727 -15.21518 -15.05697 -14.98263 -14.67083 -14.40104 -14.17264 -13.99263 -13.96970 -13.89186 -13.71703 -13.42006 -13.22707 -13.10390 -13.03698 -12.98328 -12.89874 -12.54934 -12.37832 -12.21730 -11.97041 -11.95456 -11.75648 -11.68540 -11.44961 -11.26141 -10.87350 -10.85325 -10.31516 -10.11896 -8.44897 -4.89939 -0.93677 1.30930 1.43516 1.50985 1.58415 1.83467 1.93458 1.99682 2.65868 2.71547 3.04063 3.42252 3.50764 3.54147 3.58756 3.79698 3.81769 3.88497 3.94575 4.03422 4.07163 4.09192 4.19727 4.24738 4.32658 4.40729 4.45967 4.46723 4.54337 4.63102 4.72546 4.73721 4.77737 4.88377 4.96956 5.01241 5.03658 5.07832 5.11204 5.16542 5.22431 5.24339 5.31273 5.49532 5.57771 6.24250 6.45419 6.64829 6.84617 7.11542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.411 3.589 3 O -0.978 6.978 4 O -0.990 6.990 5 C -0.552 4.552 6 H 0.170 0.830 7 C -0.118 4.118 8 C -0.111 4.111 9 C 0.140 3.860 10 H 0.078 0.922 11 N -0.710 5.710 12 C 0.516 3.484 13 O -0.567 6.567 14 C 0.134 3.866 15 C -0.121 4.121 16 C -0.051 4.051 17 C -0.286 4.286 18 C -0.056 4.056 19 O -0.556 6.556 20 Si 0.745 3.255 21 C 0.143 3.857 22 N -0.735 5.735 23 C -0.120 4.120 24 C -0.115 4.115 25 H 0.152 0.848 26 H 0.130 0.870 27 H 0.153 0.847 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.411 0.589 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.382 0.618 40 H -0.285 1.285 41 H -0.311 1.311 42 H 0.144 0.856 43 H 0.408 0.592 44 H 0.094 0.906 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 -5.179 0.941 6.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.601 3.399 3 O -0.975 6.975 4 O -0.987 6.987 5 C -0.663 4.663 6 H 0.188 0.812 7 C -0.157 4.157 8 C -0.150 4.150 9 C 0.036 3.964 10 H 0.097 0.903 11 N -0.363 5.363 12 C 0.302 3.698 13 O -0.445 6.445 14 C 0.025 3.975 15 C -0.160 4.160 16 C -0.088 4.088 17 C -0.296 4.296 18 C -0.167 4.167 19 O -0.363 6.363 20 Si 0.652 3.348 21 C 0.022 3.978 22 N -0.368 5.368 23 C -0.160 4.160 24 C -0.153 4.153 25 H 0.171 0.829 26 H 0.149 0.851 27 H 0.172 0.828 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.249 0.751 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.231 0.769 40 H -0.212 1.212 41 H -0.240 1.240 42 H 0.161 0.839 43 H 0.245 0.755 44 H 0.112 0.888 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.788 -4.607 1.174 5.511 hybrid contribution 0.648 -0.093 -0.409 0.771 sum -2.140 -4.700 0.765 5.221 Atomic orbital electron populations 1.30195 1.22852 1.13890 1.13103 1.07864 0.79766 0.74602 0.77689 1.93542 1.80656 1.36154 1.87183 1.93557 1.80946 1.67789 1.56428 1.30082 1.05054 1.14027 1.17125 0.81240 1.21473 0.91074 1.03213 0.99923 1.21728 1.01374 1.00333 0.91565 1.21065 0.94370 0.80958 0.99991 0.90345 1.46081 1.64083 1.13330 1.12825 1.20710 0.77707 0.87881 0.83469 1.90716 1.47013 1.74037 1.32772 1.21098 1.00023 0.90199 0.86167 1.21834 0.97088 0.95168 1.01892 1.19899 1.00010 0.94731 0.94209 1.20913 1.14315 0.94390 0.99999 1.24874 0.97669 0.91741 1.02377 1.86536 1.26231 1.62535 1.61040 0.94608 0.83268 0.78123 0.78773 1.20499 0.95908 0.83241 0.98145 1.44356 1.79815 1.04633 1.07966 1.21817 0.95062 1.02873 0.96206 1.21580 1.01571 0.99156 0.93014 0.82938 0.85110 0.82816 0.89464 0.90286 0.88222 0.89993 0.75097 0.87969 0.88701 0.91555 0.91609 0.91150 0.87217 0.76926 1.21213 1.24043 0.83898 0.75475 0.88775 0.92232 0.90309 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 7.34 10.01 113.37 1.14 8.47 16 2 S 2.41 -10.70 4.90 -56.49 -0.28 -10.98 16 3 O -0.98 -3.11 18.06 -127.37 -2.30 -5.41 16 4 O -0.99 -5.00 18.10 -127.37 -2.31 -7.30 16 5 C -0.55 5.81 2.62 30.60 0.08 5.89 16 6 H 0.17 -2.69 8.14 -2.39 -0.02 -2.71 16 7 C -0.12 1.02 5.03 30.60 0.15 1.18 16 8 C -0.11 1.07 5.61 30.60 0.17 1.24 16 9 C 0.14 -0.88 2.78 44.99 0.13 -0.75 16 10 H 0.08 -0.18 7.58 -2.39 -0.02 -0.20 16 11 N -0.71 4.00 4.23 -442.53 -1.87 2.13 16 12 C 0.52 -0.25 7.06 87.66 0.62 0.37 16 13 O -0.57 -3.93 15.72 -3.03 -0.05 -3.98 16 14 C 0.13 -0.31 3.36 44.33 0.15 -0.16 16 15 C -0.12 0.30 5.47 30.79 0.17 0.47 16 16 C -0.05 0.02 5.74 29.70 0.17 0.19 16 17 C -0.29 -0.04 5.44 -16.76 -0.09 -0.13 16 18 C -0.06 -0.06 2.83 71.24 0.20 0.14 16 19 O -0.56 -2.38 12.78 -148.98 -1.90 -4.28 16 20 Si 0.74 -0.11 29.68 68.60 2.04 1.92 16 21 C 0.14 -0.13 9.63 83.41 0.80 0.67 16 22 N -0.73 0.35 5.47 -328.98 -1.80 -1.45 16 23 C -0.12 0.95 5.60 30.59 0.17 1.12 16 24 C -0.12 1.23 4.75 30.59 0.15 1.38 16 25 H 0.15 -2.35 6.77 -2.39 -0.02 -2.37 16 26 H 0.13 -1.34 8.14 -2.39 -0.02 -1.36 16 27 H 0.15 -2.42 8.14 -2.39 -0.02 -2.44 16 28 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 29 H 0.08 -0.69 6.50 -2.39 -0.02 -0.70 16 30 H 0.10 -1.16 8.14 -2.39 -0.02 -1.18 16 31 H 0.08 -0.78 8.14 -2.39 -0.02 -0.79 16 32 H 0.41 -3.72 6.87 -92.71 -0.64 -4.36 16 33 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 38 H 0.11 0.07 7.96 -2.39 -0.02 0.05 16 39 H 0.38 -0.52 8.70 -74.06 -0.64 -1.16 16 40 H -0.29 -0.94 7.10 99.48 0.71 -0.23 16 41 H -0.31 -2.63 7.11 99.48 0.71 -1.93 16 42 H 0.14 -0.55 4.36 -2.91 -0.01 -0.57 16 43 H 0.41 -0.02 8.08 -92.71 -0.75 -0.77 16 44 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 45 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 46 H 0.08 -0.72 7.60 -2.39 -0.02 -0.74 16 47 H 0.10 -1.63 6.39 -2.39 -0.02 -1.64 16 Total: 0.00 -30.01 375.76 -5.45 -35.46 By element: Atomic # 1 Polarization: -25.19 SS G_CDS: -0.98 Total: -26.18 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: 4.00 Total: 20.08 kcal Atomic # 7 Polarization: 4.35 SS G_CDS: -3.67 Total: 0.68 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -6.56 Total: -20.98 kcal Atomic # 14 Polarization: -0.11 SS G_CDS: 2.04 Total: 1.92 kcal Atomic # 16 Polarization: -10.70 SS G_CDS: -0.28 Total: -10.98 kcal Total: -30.01 -5.45 -35.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_15413834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.463 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds