Wall clock time and date at job start Tue Mar 9 2021 13:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42096 * 108.58159 * 2 1 4 4 O 1.42105 * 108.57529 * 228.97005 * 2 1 3 5 5 C 1.81400 * 101.91992 * 114.48422 * 2 1 3 6 6 H 1.08998 * 109.47483 * 299.99952 * 5 2 1 7 7 C 1.53007 * 109.47062 * 59.99939 * 5 2 1 8 8 C 1.53000 * 109.46875 * 179.97438 * 7 5 2 9 9 C 1.52999 * 109.47280 * 299.99825 * 8 7 5 10 10 H 1.09003 * 109.47086 * 180.02562 * 9 8 7 11 11 N 1.46491 * 109.47168 * 300.00034 * 9 8 7 12 12 C 1.34777 * 120.00075 * 275.00237 * 11 9 8 13 13 O 1.21281 * 120.00219 * 0.02562 * 12 11 9 14 14 C 1.50710 * 119.99939 * 179.97438 * 12 11 9 15 15 C 1.53003 * 109.46792 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46803 * 180.02562 * 15 14 12 17 17 O 1.42895 * 109.47110 * 180.02562 * 16 15 14 18 18 C 1.35903 * 117.00049 * 179.97438 * 17 16 15 19 19 C 1.38715 * 120.05514 * 179.97438 * 18 17 16 20 20 C 1.38165 * 119.94424 * 179.72952 * 19 18 17 21 21 C 1.50697 * 119.97014 * 180.02562 * 20 19 18 22 22 O 1.42900 * 109.47097 * 299.99578 * 21 20 19 23 23 Si 1.86305 * 109.46612 * 179.97438 * 21 20 19 24 24 C 1.38248 * 120.05352 * 359.97438 * 20 19 18 25 25 C 1.38291 * 120.11188 * 359.97438 * 24 20 19 26 26 C 1.38119 * 120.05462 * 0.03793 * 25 24 20 27 27 C 1.52998 * 109.47165 * 60.00321 * 9 8 7 28 28 C 1.53000 * 109.47260 * 179.97438 * 5 2 1 29 29 H 1.09005 * 109.46939 * 305.51681 * 1 2 3 30 30 H 1.09001 * 109.47036 * 65.51180 * 1 2 3 31 31 H 1.08998 * 109.47486 * 185.51679 * 1 2 3 32 32 H 1.09001 * 109.47009 * 299.99916 * 7 5 2 33 33 H 1.08998 * 109.46960 * 59.99694 * 7 5 2 34 34 H 1.08997 * 109.47118 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47019 * 59.99872 * 8 7 5 36 36 H 0.97002 * 120.00291 * 94.99712 * 11 9 8 37 37 H 1.08995 * 109.46703 * 59.99985 * 14 12 11 38 38 H 1.08999 * 109.46957 * 299.99977 * 14 12 11 39 39 H 1.09000 * 109.47258 * 60.00108 * 15 14 12 40 40 H 1.08996 * 109.47035 * 299.99868 * 15 14 12 41 41 H 1.09000 * 109.47280 * 59.99933 * 16 15 14 42 42 H 1.08999 * 109.46797 * 300.00108 * 16 15 14 43 43 H 1.08000 * 120.02702 * 359.75288 * 19 18 17 44 44 H 1.08996 * 109.47029 * 60.00365 * 21 20 19 45 45 H 0.96698 * 113.99961 * 299.99787 * 22 21 20 46 46 H 1.48503 * 109.99510 * 180.02562 * 23 21 20 47 47 H 1.48501 * 109.99963 * 301.31290 * 23 21 20 48 48 H 1.08000 * 119.94403 * 179.97438 * 24 20 19 49 49 H 1.08000 * 119.96956 * 180.02562 * 25 24 20 50 50 H 1.07998 * 120.02414 * 180.02562 * 26 25 24 51 51 H 1.09002 * 109.47375 * 59.99804 * 27 9 8 52 52 H 1.08992 * 109.47101 * 180.02562 * 27 9 8 53 53 H 1.09006 * 109.46625 * 60.00198 * 28 5 2 54 54 H 1.08998 * 109.47313 * 300.00644 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8843 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.7610 -0.1170 2.4043 7 6 1.5883 -2.1411 1.6872 8 6 1.9049 -2.7617 3.0494 9 6 3.4217 -2.8452 3.2317 10 1 3.6472 -3.2877 4.2020 11 7 3.9960 -3.6765 2.1711 12 6 4.0352 -5.0163 2.3116 13 8 3.5946 -5.5338 3.3161 14 6 4.6256 -5.8715 1.2201 15 6 4.5481 -7.3442 1.6280 16 6 5.1480 -8.2124 0.5202 17 8 5.0752 -9.5878 0.9008 18 6 5.5687 -10.4984 0.0209 19 6 5.5306 -11.8510 0.3264 20 6 6.0278 -12.7752 -0.5722 21 6 5.9862 -14.2448 -0.2413 22 8 6.7347 -14.4857 0.9520 23 14 6.7261 -15.2189 -1.6465 24 6 6.5625 -12.3530 -1.7752 25 6 6.6007 -11.0052 -2.0824 26 6 6.1051 -10.0773 -1.1874 27 6 4.0221 -1.4398 3.1598 28 6 3.7054 -0.8195 1.7980 29 1 -0.3633 0.5970 0.8365 30 1 -0.3633 0.4260 -0.9352 31 1 -0.3634 -1.0229 0.0988 32 1 0.5077 -2.0817 1.5569 33 1 2.0160 -2.7597 0.8982 34 1 1.4768 -3.7628 3.1009 35 1 1.4775 -2.1432 3.8386 36 1 4.3481 -3.2626 1.3675 37 1 5.6675 -5.5926 1.0636 38 1 4.0661 -5.7199 0.2971 39 1 3.5063 -7.6234 1.7850 40 1 5.1078 -7.4954 2.5510 41 1 6.1899 -7.9330 0.3637 42 1 4.5887 -8.0611 -0.4030 43 1 5.1122 -12.1814 1.2657 44 1 4.9520 -14.5540 -0.0902 45 1 7.6661 -14.2336 0.8896 46 1 6.6904 -16.6699 -1.3326 47 1 5.9755 -14.9523 -2.8998 48 1 6.9511 -13.0769 -2.4761 49 1 7.0185 -10.6779 -3.0230 50 1 6.1348 -9.0249 -1.4280 51 1 3.5947 -0.8212 3.9490 52 1 5.1027 -1.4993 3.2892 53 1 4.1335 0.1817 1.7466 54 1 4.1328 -1.4383 1.0090 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_4549616.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:42 Heat of formation + Delta-G solvation = -162.942419 kcal Electronic energy + Delta-G solvation = -34683.206561 eV Core-core repulsion = 29906.677470 eV Total energy + Delta-G solvation = -4776.529090 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.169 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.39524 -41.18648 -39.39779 -39.06486 -38.03204 -37.29698 -37.06818 -34.91073 -34.88221 -32.44702 -32.12758 -31.55651 -30.96998 -30.12573 -28.17615 -26.81042 -24.34294 -23.82256 -23.69949 -23.42802 -21.94897 -21.55919 -20.36989 -19.74943 -19.21326 -18.32198 -17.97818 -17.81711 -17.47953 -17.22569 -17.16651 -16.97806 -16.84978 -16.56693 -16.44323 -16.15481 -15.81373 -15.44324 -15.30567 -14.94575 -14.74113 -14.66382 -14.54724 -14.24070 -14.18853 -14.00856 -13.92802 -13.77329 -13.62264 -13.28496 -13.27252 -13.15344 -13.08667 -13.05735 -13.03578 -12.73106 -12.57438 -12.32416 -12.25062 -12.22044 -11.97984 -11.97454 -11.76026 -11.62289 -11.59305 -11.45657 -10.92599 -10.87966 -10.50890 -10.06783 -9.91266 -9.24437 -4.98916 -0.96223 0.21623 0.40843 1.29841 1.63302 1.64852 1.80973 1.91632 2.00650 2.41198 2.68662 2.68761 3.00683 3.41534 3.49741 3.50620 3.63355 3.67624 3.80510 3.85572 3.87586 3.92531 3.98729 4.04570 4.07176 4.11068 4.16898 4.22577 4.23222 4.25073 4.35053 4.38722 4.40243 4.42038 4.45400 4.51849 4.54474 4.63967 4.68288 4.71523 4.86874 4.97891 4.98972 4.99461 5.00825 5.05938 5.09251 5.14960 5.18546 5.21891 5.28999 5.38889 5.45385 5.55353 5.74781 6.42582 6.53034 6.74400 7.25474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.411 3.589 3 O -0.988 6.988 4 O -0.978 6.978 5 C -0.553 4.553 6 H 0.170 0.830 7 C -0.113 4.113 8 C -0.121 4.121 9 C 0.138 3.862 10 H 0.072 0.928 11 N -0.716 5.716 12 C 0.511 3.489 13 O -0.585 6.585 14 C -0.133 4.133 15 C -0.099 4.099 16 C 0.057 3.943 17 O -0.338 6.338 18 C 0.116 3.884 19 C -0.152 4.152 20 C -0.085 4.085 21 C -0.084 4.084 22 O -0.557 6.557 23 Si 0.793 3.207 24 C -0.160 4.160 25 C -0.072 4.072 26 C -0.206 4.206 27 C -0.111 4.111 28 C -0.117 4.117 29 H 0.154 0.846 30 H 0.132 0.868 31 H 0.151 0.849 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.412 0.588 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.102 0.898 45 H 0.395 0.605 46 H -0.300 1.300 47 H -0.282 1.282 48 H 0.148 0.852 49 H 0.159 0.841 50 H 0.152 0.848 51 H 0.097 0.903 52 H 0.082 0.918 53 H 0.089 0.911 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 4.785 -2.935 5.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.600 3.400 3 O -0.985 6.985 4 O -0.975 6.975 5 C -0.664 4.664 6 H 0.187 0.813 7 C -0.151 4.151 8 C -0.161 4.161 9 C 0.033 3.967 10 H 0.091 0.909 11 N -0.370 5.370 12 C 0.298 3.702 13 O -0.465 6.465 14 C -0.172 4.172 15 C -0.137 4.137 16 C -0.017 4.017 17 O -0.253 6.253 18 C 0.071 3.929 19 C -0.171 4.171 20 C -0.085 4.085 21 C -0.193 4.193 22 O -0.365 6.365 23 Si 0.698 3.302 24 C -0.178 4.178 25 C -0.090 4.090 26 C -0.225 4.225 27 C -0.149 4.149 28 C -0.156 4.156 29 H 0.172 0.828 30 H 0.150 0.850 31 H 0.170 0.830 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.250 0.750 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.133 0.867 44 H 0.120 0.880 45 H 0.245 0.755 46 H -0.228 1.228 47 H -0.208 1.208 48 H 0.165 0.835 49 H 0.177 0.823 50 H 0.170 0.830 51 H 0.116 0.884 52 H 0.101 0.899 53 H 0.108 0.892 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.970 3.949 -3.125 5.128 hybrid contribution -1.150 0.212 0.785 1.408 sum -0.180 4.161 -2.340 4.777 Atomic orbital electron populations 1.30191 1.22806 1.13758 1.13300 1.07879 0.79808 0.74280 0.78018 1.93557 1.80914 1.36669 1.87339 1.93538 1.80675 1.67294 1.56032 1.30090 1.05578 1.08866 1.21851 0.81258 1.21531 1.02316 0.91747 0.99507 1.21817 0.95328 1.01196 0.97728 1.21010 0.93358 0.91080 0.91224 0.90937 1.46136 1.62280 1.05877 1.22678 1.21061 0.77899 0.83167 0.88025 1.90729 1.49163 1.73887 1.32723 1.21572 1.05068 0.92416 0.98190 1.21128 1.01829 0.92872 0.97896 1.22995 1.02419 0.77577 0.98713 1.86051 1.77480 1.17527 1.44202 1.19206 0.94612 0.89340 0.89766 1.20312 1.05201 0.90241 1.01299 1.20220 0.98089 0.95696 0.94532 1.25386 1.00307 0.95469 0.98090 1.86468 1.27197 1.86968 1.35909 0.93508 0.88736 0.75043 0.72925 1.21189 1.02801 0.97157 0.96635 1.21310 0.96072 0.92041 0.99585 1.21598 1.04672 1.02130 0.94097 1.21709 1.02076 0.93842 0.97314 1.21464 0.90863 1.03463 0.99797 0.82803 0.84983 0.83020 0.87917 0.90282 0.92585 0.88982 0.75004 0.85659 0.85817 0.92144 0.92052 0.89824 0.90085 0.86670 0.88040 0.75461 1.22838 1.20841 0.83466 0.82335 0.83021 0.88440 0.89910 0.89236 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 7.13 10.17 113.37 1.15 8.29 16 2 S 2.41 -10.01 4.88 -56.49 -0.28 -10.29 16 3 O -0.99 -4.93 18.10 -127.37 -2.30 -7.23 16 4 O -0.98 -3.21 17.91 -127.37 -2.28 -5.49 16 5 C -0.55 5.41 2.58 30.60 0.08 5.49 16 6 H 0.17 -2.59 8.14 -2.39 -0.02 -2.61 16 7 C -0.11 1.04 4.80 30.60 0.15 1.19 16 8 C -0.12 0.71 5.60 30.59 0.17 0.88 16 9 C 0.14 -0.60 2.78 44.99 0.13 -0.48 16 10 H 0.07 0.03 7.58 -2.39 -0.02 0.02 16 11 N -0.72 3.33 4.23 -442.54 -1.87 1.46 16 12 C 0.51 0.30 7.79 87.66 0.68 0.98 16 13 O -0.59 -6.19 15.64 -3.03 -0.05 -6.24 16 14 C -0.13 0.77 5.70 29.85 0.17 0.94 16 15 C -0.10 -0.03 4.87 30.60 0.15 0.12 16 16 C 0.06 -0.10 4.74 71.98 0.34 0.24 16 17 O -0.34 -2.19 10.14 -92.45 -0.94 -3.13 16 18 C 0.12 0.62 6.69 22.51 0.15 0.77 16 19 C -0.15 -1.03 9.55 22.37 0.21 -0.82 16 20 C -0.08 -0.25 5.39 -19.88 -0.11 -0.35 16 21 C -0.08 -0.17 2.82 71.24 0.20 0.03 16 22 O -0.56 -1.76 12.77 -148.98 -1.90 -3.66 16 23 Si 0.79 -1.26 29.79 68.60 2.04 0.78 16 24 C -0.16 0.14 8.67 22.28 0.19 0.34 16 25 C -0.07 0.16 10.04 22.25 0.22 0.38 16 26 C -0.21 0.02 9.04 22.36 0.20 0.23 16 27 C -0.11 0.94 5.61 30.58 0.17 1.11 16 28 C -0.12 0.95 5.03 30.58 0.15 1.11 16 29 H 0.15 -2.37 8.14 -2.39 -0.02 -2.39 16 30 H 0.13 -1.35 8.14 -2.39 -0.02 -1.37 16 31 H 0.15 -2.27 6.87 -2.39 -0.02 -2.29 16 32 H 0.10 -1.43 6.56 -2.39 -0.02 -1.45 16 33 H 0.08 -0.61 7.52 -2.39 -0.02 -0.63 16 34 H 0.06 -0.05 8.14 -2.39 -0.02 -0.06 16 35 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 36 H 0.41 -3.81 6.87 -92.71 -0.64 -4.45 16 37 H 0.13 -1.37 8.14 -2.39 -0.02 -1.39 16 38 H 0.12 -1.29 8.14 -2.39 -0.02 -1.31 16 39 H 0.06 0.28 8.10 -2.39 -0.02 0.26 16 40 H 0.06 0.28 8.10 -2.39 -0.02 0.26 16 41 H 0.08 -0.47 7.68 -2.39 -0.02 -0.49 16 42 H 0.08 -0.42 7.65 -2.39 -0.02 -0.44 16 43 H 0.12 1.07 8.06 -2.91 -0.02 1.04 16 44 H 0.10 0.40 7.96 -2.39 -0.02 0.38 16 45 H 0.40 -2.10 8.70 -74.06 -0.64 -2.74 16 46 H -0.30 -1.77 7.11 99.48 0.71 -1.07 16 47 H -0.28 -0.66 7.11 99.48 0.71 0.05 16 48 H 0.15 -0.81 4.87 -2.91 -0.01 -0.83 16 49 H 0.16 -1.29 8.06 -2.91 -0.02 -1.32 16 50 H 0.15 -0.81 6.30 -2.91 -0.02 -0.83 16 51 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 52 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 53 H 0.09 -0.70 8.14 -2.38 -0.02 -0.72 16 54 H 0.08 -0.69 6.50 -2.39 -0.02 -0.71 16 Total: 0.00 -37.51 438.33 -3.47 -40.98 By element: Atomic # 1 Polarization: -27.32 SS G_CDS: -0.32 Total: -27.64 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 4.42 Total: 20.45 kcal Atomic # 7 Polarization: 3.33 SS G_CDS: -1.87 Total: 1.46 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -7.47 Total: -25.75 kcal Atomic # 14 Polarization: -1.26 SS G_CDS: 2.04 Total: 0.78 kcal Atomic # 16 Polarization: -10.01 SS G_CDS: -0.28 Total: -10.29 kcal Total: -37.51 -3.47 -40.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_4549616.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.958 kcal (2) G-P(sol) polarization free energy of solvation -37.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds