Wall clock time and date at job start Tue Mar 9 2021 13:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42103 * 108.57809 * 2 1 4 4 O 1.42100 * 108.57902 * 228.97396 * 2 1 3 5 5 C 1.81402 * 101.92046 * 114.48576 * 2 1 3 6 6 H 1.08998 * 109.47150 * 64.99952 * 5 2 1 7 7 C 1.52998 * 109.46750 * 185.00177 * 5 2 1 8 8 C 1.53007 * 109.46704 * 180.02562 * 7 5 2 9 9 C 1.53006 * 109.47166 * 299.99499 * 8 7 5 10 10 H 1.08995 * 109.47287 * 179.97438 * 9 8 7 11 11 N 1.46503 * 109.47132 * 300.00467 * 9 8 7 12 12 C 1.34771 * 119.99620 * 204.99625 * 11 9 8 13 13 O 1.21280 * 120.00397 * 359.97438 * 12 11 9 14 14 C 1.50698 * 119.99895 * 180.02562 * 12 11 9 15 15 F 1.39897 * 109.47138 * 60.00007 * 14 12 11 16 16 F 1.39901 * 109.47188 * 299.99744 * 14 12 11 17 17 O 1.42903 * 109.47143 * 180.02562 * 14 12 11 18 18 C 1.35904 * 116.99671 * 180.02562 * 17 14 12 19 19 C 1.38734 * 120.05053 * 179.97438 * 18 17 14 20 20 C 1.38145 * 119.94237 * 179.71805 * 19 18 17 21 21 C 1.38264 * 120.05437 * 0.25588 * 20 19 18 22 22 C 1.50706 * 119.94244 * 179.97438 * 21 20 19 23 23 O 1.42897 * 109.47174 * 299.99775 * 22 21 20 24 24 Si 1.86307 * 109.46926 * 179.97438 * 22 21 20 25 25 C 1.38268 * 120.11230 * 359.97438 * 21 20 19 26 26 C 1.38137 * 120.05826 * 0.02562 * 25 21 20 27 27 C 1.53005 * 109.46782 * 60.00141 * 9 8 7 28 28 C 1.53006 * 109.46631 * 304.99710 * 5 2 1 29 29 H 1.09002 * 109.47077 * 305.51511 * 1 2 3 30 30 H 1.09006 * 109.46831 * 65.51248 * 1 2 3 31 31 H 1.08994 * 109.47315 * 185.51179 * 1 2 3 32 32 H 1.08998 * 109.47478 * 59.99976 * 7 5 2 33 33 H 1.08996 * 109.47377 * 299.99621 * 7 5 2 34 34 H 1.09002 * 109.46655 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47189 * 59.99779 * 8 7 5 36 36 H 0.97000 * 119.99778 * 24.99907 * 11 9 8 37 37 H 1.08002 * 120.03267 * 0.02562 * 19 18 17 38 38 H 1.07999 * 119.97318 * 180.27444 * 20 19 18 39 39 H 1.08999 * 109.47182 * 60.00687 * 22 21 20 40 40 H 0.96697 * 114.00863 * 300.00226 * 23 22 21 41 41 H 1.48502 * 109.99794 * 180.02562 * 24 22 21 42 42 H 1.48494 * 110.00343 * 301.32354 * 24 22 21 43 43 H 1.08007 * 119.96697 * 180.02562 * 25 21 20 44 44 H 1.07992 * 120.03166 * 179.97438 * 26 25 21 45 45 H 1.08998 * 109.47144 * 59.99982 * 27 9 8 46 46 H 1.08996 * 109.47260 * 180.02562 * 27 9 8 47 47 H 1.08998 * 109.47551 * 299.99996 * 28 5 2 48 48 H 1.09002 * 109.47197 * 60.00771 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7356 1.6153 6 1 1.8388 -1.7678 1.6344 7 6 3.7000 -0.7049 1.8513 8 6 4.0161 -1.3260 3.2135 9 6 3.3119 -0.5288 4.3133 10 1 3.5367 -0.9714 5.2836 11 7 3.7821 0.8585 4.2881 12 6 3.7226 1.6105 5.4049 13 8 3.2795 1.1390 6.4307 14 6 4.2057 3.0377 5.3789 15 9 3.4630 3.7644 4.4422 16 9 5.5588 3.0657 5.0243 17 8 4.0410 3.6200 6.6735 18 6 4.4305 4.9135 6.8222 19 6 4.2984 5.5418 8.0520 20 6 4.7004 6.8549 8.2022 21 6 5.2291 7.5446 7.1268 22 6 5.6664 8.9772 7.2933 23 8 4.5501 9.7718 7.6988 24 14 6.3288 9.6165 5.6736 25 6 5.3574 6.9221 5.8988 26 6 4.9569 5.6092 5.7434 27 6 1.8005 -0.5594 4.0771 28 6 1.4845 0.0622 2.7146 29 1 -0.3633 0.5970 0.8365 30 1 -0.3633 0.4260 -0.9353 31 1 -0.3633 -1.0228 0.0987 32 1 4.0499 0.3272 1.8322 33 1 4.2017 -1.2732 1.0681 34 1 5.0928 -1.3037 3.3818 35 1 3.6663 -2.3582 3.2322 36 1 4.1361 1.2358 3.4676 37 1 3.8863 5.0033 8.8926 38 1 4.6020 7.3431 9.1605 39 1 6.4470 9.0330 8.0519 40 1 3.8158 9.7689 7.0696 41 1 6.7640 11.0282 5.8246 42 1 7.4702 8.7788 5.2255 43 1 5.7711 7.4629 5.0604 44 1 5.0568 5.1236 4.7841 45 1 1.4507 -1.5915 4.0958 46 1 1.2988 0.0089 4.8603 47 1 1.8344 1.0943 2.6955 48 1 0.4077 0.0403 2.5465 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_4549640.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:17 Heat of formation + Delta-G solvation = -237.787618 kcal Electronic energy + Delta-G solvation = -37903.072700 eV Core-core repulsion = 32495.465365 eV Total energy + Delta-G solvation = -5407.607335 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.119 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -50.91008 -48.88489 -41.66420 -41.32684 -39.63687 -39.09008 -38.01381 -37.24960 -37.05252 -35.32644 -32.48684 -32.20154 -32.08366 -31.55141 -30.11819 -28.77916 -26.33171 -24.73400 -24.07276 -23.85618 -22.95803 -22.49270 -20.80490 -20.51361 -19.92907 -19.73462 -19.70623 -18.57253 -18.02965 -17.65122 -17.37204 -17.13337 -16.98725 -16.83083 -16.60796 -16.40653 -16.24347 -15.99091 -15.75231 -15.54097 -15.44881 -15.36643 -15.19056 -15.13017 -15.02942 -14.69854 -14.41967 -14.37177 -14.23866 -14.01404 -13.93105 -13.83411 -13.61447 -13.56119 -13.25594 -13.12089 -13.04243 -13.04193 -12.64782 -12.40585 -12.26134 -12.15630 -11.98856 -11.90600 -11.81418 -11.57880 -11.51866 -10.91612 -10.47946 -10.47892 -10.21088 -9.59683 -5.01651 -0.94480 -0.00033 0.13686 0.46854 0.62854 1.29435 1.61074 1.67115 1.82814 1.94327 1.99945 2.44372 2.70331 2.76184 3.02947 3.20341 3.38881 3.47626 3.49109 3.52956 3.63582 3.73270 3.74633 3.85630 3.97760 4.07390 4.08343 4.14128 4.19414 4.23620 4.36488 4.38780 4.40047 4.44409 4.50326 4.67309 4.80900 4.81492 4.87678 4.88294 4.94463 5.00285 5.02824 5.04953 5.09013 5.16763 5.27034 5.32685 5.36808 5.79348 5.83762 6.42014 6.76364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 2.408 3.592 3 O -0.982 6.982 4 O -0.988 6.988 5 C -0.552 4.552 6 H 0.178 0.822 7 C -0.123 4.123 8 C -0.111 4.111 9 C 0.136 3.864 10 H 0.095 0.905 11 N -0.685 5.685 12 C 0.519 3.481 13 O -0.502 6.502 14 C 0.429 3.571 15 F -0.171 7.171 16 F -0.175 7.175 17 O -0.303 6.303 18 C 0.086 3.914 19 C -0.135 4.135 20 C -0.058 4.058 21 C -0.141 4.141 22 C -0.067 4.067 23 O -0.553 6.553 24 Si 0.768 3.232 25 C -0.078 4.078 26 C -0.195 4.195 27 C -0.123 4.123 28 C -0.120 4.120 29 H 0.152 0.848 30 H 0.130 0.870 31 H 0.156 0.844 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.417 0.583 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.113 0.887 40 H 0.396 0.604 41 H -0.297 1.297 42 H -0.286 1.286 43 H 0.152 0.848 44 H 0.140 0.860 45 H 0.109 0.891 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.535 -3.938 -1.861 6.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.597 3.403 3 O -0.979 6.979 4 O -0.985 6.985 5 C -0.663 4.663 6 H 0.195 0.805 7 C -0.161 4.161 8 C -0.150 4.150 9 C 0.034 3.966 10 H 0.113 0.887 11 N -0.339 5.339 12 C 0.297 3.703 13 O -0.376 6.376 14 C 0.351 3.649 15 F -0.152 7.152 16 F -0.156 7.156 17 O -0.220 6.220 18 C 0.043 3.957 19 C -0.153 4.153 20 C -0.075 4.075 21 C -0.142 4.142 22 C -0.177 4.177 23 O -0.361 6.361 24 Si 0.675 3.325 25 C -0.096 4.096 26 C -0.213 4.213 27 C -0.162 4.162 28 C -0.158 4.158 29 H 0.170 0.830 30 H 0.149 0.851 31 H 0.174 0.826 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.131 0.869 36 H 0.255 0.745 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.130 0.870 40 H 0.246 0.754 41 H -0.225 1.225 42 H -0.213 1.213 43 H 0.170 0.830 44 H 0.157 0.843 45 H 0.127 0.873 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.272 -3.666 -1.659 5.186 hybrid contribution 0.142 -0.020 0.397 0.423 sum -3.129 -3.686 -1.262 4.997 Atomic orbital electron populations 1.30185 1.22618 1.14023 1.13102 1.07950 0.79912 0.74596 0.77814 1.93547 1.80749 1.36365 1.87229 1.93559 1.80951 1.67693 1.56332 1.30093 1.04901 1.14365 1.16967 0.80494 1.21516 0.91273 1.03048 1.00282 1.21785 1.01643 1.00635 0.90899 1.21464 0.95177 0.78454 1.01547 0.88653 1.46093 1.62343 1.14150 1.11360 1.19315 0.80735 0.84547 0.85736 1.90848 1.44084 1.70897 1.31742 1.21945 0.75476 0.90559 0.76912 1.93200 1.76514 1.79566 1.65923 1.93190 1.33898 1.96862 1.91651 1.86643 1.79991 1.26411 1.28984 1.19242 0.98245 0.81887 0.96334 1.20708 1.03795 0.95547 0.95258 1.21054 0.94806 0.92002 0.99688 1.20494 1.02265 0.97484 0.93919 1.25084 0.93238 0.88072 1.11302 1.86469 1.28879 1.69159 1.51604 0.93771 0.83559 0.75940 0.79245 1.21019 0.97571 0.93727 0.97262 1.21605 1.04179 0.97069 0.98452 1.21903 0.94113 1.03914 0.96308 1.21645 1.02046 0.98923 0.93230 0.82983 0.85115 0.82566 0.90824 0.88916 0.89555 0.86883 0.74453 0.83612 0.83156 0.86999 0.75401 1.22454 1.21288 0.83049 0.84283 0.87275 0.91756 0.90918 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 7.51 10.01 113.37 1.14 8.64 16 2 S 2.41 -10.62 4.90 -56.49 -0.28 -10.90 16 3 O -0.98 -3.94 18.06 -127.37 -2.30 -6.24 16 4 O -0.99 -4.67 18.10 -127.37 -2.31 -6.97 16 5 C -0.55 6.13 2.62 30.60 0.08 6.21 16 6 H 0.18 -3.11 8.14 -2.39 -0.02 -3.13 16 7 C -0.12 1.11 5.03 30.60 0.15 1.26 16 8 C -0.11 1.21 5.61 30.60 0.17 1.38 16 9 C 0.14 -0.95 2.78 44.99 0.13 -0.83 16 10 H 0.10 -0.45 7.58 -2.39 -0.02 -0.47 16 11 N -0.68 2.46 4.23 -442.53 -1.87 0.59 16 12 C 0.52 1.72 7.31 87.66 0.64 2.36 16 13 O -0.50 -4.73 16.16 16.01 0.26 -4.48 16 14 C 0.43 1.91 2.05 71.24 0.15 2.06 16 15 F -0.17 -0.53 15.28 44.97 0.69 0.16 16 16 F -0.17 -0.63 15.31 44.97 0.69 0.06 16 17 O -0.30 -2.53 9.60 -73.43 -0.71 -3.24 16 18 C 0.09 0.54 6.48 22.51 0.15 0.69 16 19 C -0.13 -0.52 9.99 22.37 0.22 -0.30 16 20 C -0.06 -0.09 9.60 22.25 0.21 0.13 16 21 C -0.14 -0.09 5.39 -19.85 -0.11 -0.19 16 22 C -0.07 0.06 2.82 71.24 0.20 0.26 16 23 O -0.55 0.27 12.77 -148.98 -1.90 -1.63 16 24 Si 0.77 -1.56 29.79 68.60 2.04 0.49 16 25 C -0.08 -0.05 8.66 22.25 0.19 0.14 16 26 C -0.19 -0.75 8.26 22.36 0.18 -0.56 16 27 C -0.12 1.13 5.61 30.62 0.17 1.30 16 28 C -0.12 1.31 4.75 30.62 0.15 1.46 16 29 H 0.15 -2.37 6.77 -2.39 -0.02 -2.38 16 30 H 0.13 -1.37 8.14 -2.39 -0.02 -1.39 16 31 H 0.16 -2.57 8.14 -2.39 -0.02 -2.59 16 32 H 0.07 -0.60 6.51 -2.39 -0.02 -0.61 16 33 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 34 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 35 H 0.11 -1.61 8.14 -2.39 -0.02 -1.63 16 36 H 0.42 -2.69 6.87 -92.71 -0.64 -3.33 16 37 H 0.15 0.27 8.06 -2.91 -0.02 0.25 16 38 H 0.15 -0.17 8.06 -2.91 -0.02 -0.19 16 39 H 0.11 -0.03 7.96 -2.39 -0.02 -0.04 16 40 H 0.40 -3.27 8.70 -74.06 -0.64 -3.92 16 41 H -0.30 -1.59 7.11 99.48 0.71 -0.88 16 42 H -0.29 -0.80 7.11 99.48 0.71 -0.09 16 43 H 0.15 -0.57 4.87 -2.91 -0.01 -0.58 16 44 H 0.14 0.35 5.10 -2.91 -0.01 0.34 16 45 H 0.11 -1.46 8.14 -2.39 -0.02 -1.48 16 46 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 47 H 0.07 -0.59 7.61 -2.39 -0.02 -0.61 16 48 H 0.11 -1.79 6.39 -2.39 -0.02 -1.81 16 Total: 0.00 -32.76 404.99 -2.06 -34.82 By element: Atomic # 1 Polarization: -26.48 SS G_CDS: -0.20 Total: -26.68 kcal Atomic # 6 Polarization: 20.19 SS G_CDS: 3.82 Total: 24.01 kcal Atomic # 7 Polarization: 2.46 SS G_CDS: -1.87 Total: 0.59 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -6.95 Total: -22.55 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 1.38 Total: 0.22 kcal Atomic # 14 Polarization: -1.56 SS G_CDS: 2.04 Total: 0.49 kcal Atomic # 16 Polarization: -10.62 SS G_CDS: -0.28 Total: -10.90 kcal Total: -32.76 -2.06 -34.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_4549640.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.965 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds