Wall clock time and date at job start Tue Mar 9 2021 13:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42101 * 108.57971 * 2 1 4 4 O 1.42101 * 108.57879 * 228.97568 * 2 1 3 5 5 C 1.81399 * 101.92138 * 114.48982 * 2 1 3 6 6 H 1.08999 * 109.47282 * 65.00025 * 5 2 1 7 7 C 1.53000 * 109.46945 * 184.99675 * 5 2 1 8 8 C 1.53007 * 109.47206 * 179.97438 * 7 5 2 9 9 C 1.53001 * 109.47138 * 300.00385 * 8 7 5 10 10 H 1.08995 * 109.47066 * 179.97438 * 9 8 7 11 11 N 1.46502 * 109.46925 * 299.99883 * 9 8 7 12 12 C 1.34780 * 119.99852 * 205.00025 * 11 9 8 13 13 O 1.21279 * 119.99721 * 359.97438 * 12 11 9 14 14 C 1.50700 * 119.99797 * 180.02562 * 12 11 9 15 15 O 1.42900 * 109.46759 * 180.02562 * 14 12 11 16 16 C 1.35904 * 117.00131 * 179.97438 * 15 14 12 17 17 C 1.38705 * 120.05924 * 180.25191 * 16 15 14 18 18 C 1.38173 * 119.94203 * 180.25551 * 17 16 15 19 19 C 1.50701 * 119.96834 * 179.74471 * 18 17 16 20 20 O 1.42902 * 109.47202 * 300.02172 * 19 18 17 21 21 Si 1.86305 * 109.47023 * 180.02562 * 19 18 17 22 22 C 1.38232 * 120.05823 * 359.76822 * 18 17 16 23 23 C 1.38294 * 120.11124 * 359.97438 * 22 18 17 24 24 C 1.38122 * 120.05499 * 359.97438 * 23 22 18 25 25 C 1.53001 * 109.47015 * 59.99681 * 9 8 7 26 26 C 1.53001 * 109.47174 * 304.99923 * 5 2 1 27 27 H 1.08999 * 109.47009 * 305.51347 * 1 2 3 28 28 H 1.09004 * 109.47432 * 65.50589 * 1 2 3 29 29 H 1.09001 * 109.47606 * 185.51262 * 1 2 3 30 30 H 1.09003 * 109.47323 * 60.00645 * 7 5 2 31 31 H 1.08994 * 109.47716 * 299.99940 * 7 5 2 32 32 H 1.08999 * 109.47369 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46752 * 59.99873 * 8 7 5 34 34 H 0.97005 * 120.00332 * 25.00238 * 11 9 8 35 35 H 1.09000 * 109.47614 * 60.00223 * 14 12 11 36 36 H 1.08994 * 109.47045 * 299.99585 * 14 12 11 37 37 H 1.07997 * 120.03160 * 0.02562 * 17 16 15 38 38 H 1.08997 * 109.47279 * 60.02480 * 19 18 17 39 39 H 0.96699 * 113.99847 * 300.00081 * 20 19 18 40 40 H 1.48497 * 109.99860 * 58.67968 * 21 19 18 41 41 H 1.48492 * 110.00137 * 179.97438 * 21 19 18 42 42 H 1.08003 * 119.94745 * 179.97438 * 22 18 17 43 43 H 1.08000 * 119.97251 * 179.97438 * 23 22 18 44 44 H 1.08002 * 120.02504 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.47518 * 60.00119 * 25 9 8 46 46 H 1.09003 * 109.47145 * 180.02562 * 25 9 8 47 47 H 1.08999 * 109.46880 * 299.99706 * 26 5 2 48 48 H 1.08999 * 109.46995 * 60.00063 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 1 1.8388 -1.7679 1.6343 7 6 3.7000 -0.7052 1.8512 8 6 4.0161 -1.3252 3.2138 9 6 3.3120 -0.5270 4.3130 10 1 3.5368 -0.9690 5.2836 11 7 3.7824 0.8602 4.2867 12 6 3.7231 1.6131 5.4030 13 8 3.2799 1.1423 6.4291 14 6 4.2064 3.0402 5.3758 15 8 4.0418 3.6235 6.6699 16 6 4.4324 4.9168 6.8180 17 6 4.3060 5.5441 8.0486 18 6 4.6990 6.8607 8.1951 19 6 4.5565 7.5447 9.5304 20 8 3.1814 7.5487 9.9192 21 14 5.1695 9.2990 9.3980 22 6 5.2223 7.5510 7.1179 23 6 5.3544 6.9261 5.8913 24 6 4.9639 5.6099 5.7399 25 6 1.8006 -0.5576 4.0769 26 6 1.4845 0.0619 2.7147 27 1 -0.3633 0.5970 0.8365 28 1 -0.3634 0.4261 -0.9352 29 1 -0.3634 -1.0229 0.0987 30 1 4.0500 0.3270 1.8322 31 1 4.2017 -1.2734 1.0680 32 1 5.0928 -1.3030 3.3822 33 1 3.6661 -2.3572 3.2334 34 1 4.1364 1.2368 3.4659 35 1 3.6278 3.6060 4.6456 36 1 5.2605 3.0616 5.0995 37 1 3.8972 5.0053 8.8905 38 1 5.1436 7.0100 10.2770 39 1 2.5988 8.0086 9.2994 40 1 4.3981 10.0296 8.3606 41 1 5.0338 9.9846 10.7081 42 1 5.5285 8.5801 7.2343 43 1 5.7631 7.4677 5.0511 44 1 5.0677 5.1222 4.7818 45 1 1.4506 -1.5897 4.0964 46 1 1.2990 0.0114 4.8597 47 1 1.8344 1.0940 2.6956 48 1 0.4078 0.0401 2.5465 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_4860298.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:29 Heat of formation + Delta-G solvation = -147.000826 kcal Electronic energy + Delta-G solvation = -31541.805847 eV Core-core repulsion = 27077.043274 eV Total energy + Delta-G solvation = -4464.762573 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.69420 -41.01160 -39.51555 -38.74130 -38.02238 -37.34541 -37.06636 -35.02801 -32.50248 -32.20132 -32.02739 -31.17652 -30.13054 -28.87078 -26.82077 -24.20503 -23.82373 -23.67920 -22.89655 -21.75835 -20.45227 -19.74737 -19.34306 -18.70948 -18.00723 -17.82669 -17.49836 -17.30412 -17.08684 -16.99547 -16.90538 -16.33540 -16.30502 -16.13550 -15.68406 -15.30462 -15.06051 -14.95751 -14.71990 -14.65857 -14.15674 -14.01840 -13.98223 -13.93490 -13.81997 -13.49980 -13.43270 -13.24884 -13.12473 -13.05747 -12.99721 -12.61335 -12.58123 -12.24339 -12.12835 -12.03727 -11.98473 -11.77240 -11.61751 -11.47765 -11.01736 -10.89016 -10.69164 -10.18340 -9.93769 -9.29726 -4.90963 -0.95758 0.19634 0.38371 1.27560 1.42153 1.49825 1.62118 1.81199 1.96752 2.58708 2.65936 2.69161 3.01743 3.39255 3.40319 3.48496 3.52963 3.65218 3.79224 3.83979 3.91484 3.99008 4.00727 4.05801 4.07822 4.12059 4.17685 4.22463 4.24127 4.36435 4.39136 4.44134 4.51973 4.54279 4.63509 4.70568 4.86309 4.94477 4.97732 4.99718 5.05377 5.08525 5.13818 5.20338 5.23836 5.36474 5.43703 5.44614 5.68450 6.25343 6.43011 6.45627 7.09038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.413 3.587 3 O -0.978 6.978 4 O -0.988 6.988 5 C -0.553 4.553 6 H 0.170 0.830 7 C -0.118 4.118 8 C -0.110 4.110 9 C 0.140 3.860 10 H 0.075 0.925 11 N -0.707 5.707 12 C 0.515 3.485 13 O -0.568 6.568 14 C 0.033 3.967 15 O -0.321 6.321 16 C 0.113 3.887 17 C -0.149 4.149 18 C -0.082 4.082 19 C -0.094 4.094 20 O -0.551 6.551 21 Si 0.785 3.215 22 C -0.156 4.156 23 C -0.071 4.071 24 C -0.203 4.203 25 C -0.123 4.123 26 C -0.115 4.115 27 H 0.151 0.849 28 H 0.131 0.869 29 H 0.154 0.846 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.415 0.585 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.386 0.614 40 H -0.277 1.277 41 H -0.305 1.305 42 H 0.150 0.850 43 H 0.162 0.838 44 H 0.158 0.842 45 H 0.095 0.905 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -0.435 -5.240 5.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.602 3.398 3 O -0.976 6.976 4 O -0.985 6.985 5 C -0.664 4.664 6 H 0.188 0.812 7 C -0.157 4.157 8 C -0.149 4.149 9 C 0.036 3.964 10 H 0.093 0.907 11 N -0.362 5.362 12 C 0.301 3.699 13 O -0.447 6.447 14 C -0.044 4.044 15 O -0.234 6.234 16 C 0.068 3.932 17 C -0.168 4.168 18 C -0.082 4.082 19 C -0.202 4.202 20 O -0.359 6.359 21 Si 0.689 3.311 22 C -0.174 4.174 23 C -0.088 4.088 24 C -0.222 4.222 25 C -0.162 4.162 26 C -0.153 4.153 27 H 0.169 0.831 28 H 0.150 0.850 29 H 0.172 0.828 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.254 0.746 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.235 0.765 40 H -0.203 1.203 41 H -0.234 1.234 42 H 0.167 0.833 43 H 0.179 0.821 44 H 0.175 0.825 45 H 0.114 0.886 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.526 -0.117 -4.529 4.780 hybrid contribution -1.703 -0.465 0.161 1.773 sum -0.178 -0.582 -4.368 4.410 Atomic orbital electron populations 1.30204 1.22943 1.13907 1.13101 1.07835 0.79726 0.74608 0.77652 1.93536 1.80655 1.36171 1.87190 1.93561 1.80892 1.67743 1.56307 1.30098 1.05211 1.14051 1.17059 0.81196 1.21486 0.90926 1.03403 0.99844 1.21729 1.01475 1.00251 0.91424 1.21077 0.94394 0.80783 1.00133 0.90672 1.45921 1.64525 1.13356 1.12424 1.20438 0.78047 0.87817 0.83596 1.90760 1.46620 1.74120 1.33156 1.22757 1.04970 0.91489 0.85216 1.86121 1.80148 1.24353 1.32826 1.19197 0.95833 0.83113 0.95018 1.20288 1.05344 0.95203 0.95940 1.20137 0.98495 0.93180 0.96388 1.25466 0.86093 1.13059 0.95552 1.86578 1.17741 1.79313 1.52273 0.93884 0.89665 0.70765 0.76789 1.21212 1.02395 1.00925 0.92856 1.21328 0.96033 0.93598 0.97882 1.21630 1.04822 0.96878 0.98849 1.21828 0.95124 1.02955 0.96299 1.21562 1.01610 0.99191 0.92912 0.83065 0.85006 0.82803 0.89994 0.89180 0.89685 0.88176 0.74635 0.86095 0.85896 0.86914 0.86215 0.76463 1.20310 1.23355 0.83321 0.82070 0.82466 0.88646 0.92625 0.90257 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 7.29 10.01 113.37 1.14 8.43 16 2 S 2.41 -11.16 4.90 -56.49 -0.28 -11.44 16 3 O -0.98 -2.67 18.06 -127.37 -2.30 -4.97 16 4 O -0.99 -4.58 18.10 -127.37 -2.30 -6.88 16 5 C -0.55 5.75 2.62 30.59 0.08 5.83 16 6 H 0.17 -2.67 8.14 -2.39 -0.02 -2.69 16 7 C -0.12 1.06 5.03 30.60 0.15 1.22 16 8 C -0.11 1.02 5.61 30.60 0.17 1.19 16 9 C 0.14 -0.67 2.78 44.99 0.13 -0.55 16 10 H 0.08 0.01 7.58 -2.39 -0.02 -0.01 16 11 N -0.71 3.35 4.23 -442.53 -1.87 1.48 16 12 C 0.51 1.28 7.87 87.66 0.69 1.97 16 13 O -0.57 -7.67 16.16 16.01 0.26 -7.41 16 14 C 0.03 -0.07 5.22 71.24 0.37 0.31 16 15 O -0.32 -2.37 9.67 -73.43 -0.71 -3.08 16 16 C 0.11 0.55 6.69 22.51 0.15 0.70 16 17 C -0.15 -1.01 9.55 22.37 0.21 -0.80 16 18 C -0.08 -0.20 5.39 -19.88 -0.11 -0.30 16 19 C -0.09 -0.16 2.82 71.24 0.20 0.04 16 20 O -0.55 -3.06 12.77 -148.98 -1.90 -4.96 16 21 Si 0.78 -1.38 29.79 68.60 2.04 0.66 16 22 C -0.16 0.28 8.67 22.28 0.19 0.47 16 23 C -0.07 0.25 10.04 22.26 0.22 0.47 16 24 C -0.20 0.35 9.04 22.37 0.20 0.55 16 25 C -0.12 0.77 5.60 30.58 0.17 0.94 16 26 C -0.11 1.14 4.75 30.58 0.15 1.28 16 27 H 0.15 -2.28 6.77 -2.39 -0.02 -2.30 16 28 H 0.13 -1.37 8.14 -2.39 -0.02 -1.39 16 29 H 0.15 -2.40 8.14 -2.39 -0.02 -2.42 16 30 H 0.08 -0.80 6.50 -2.39 -0.02 -0.81 16 31 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 32 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 33 H 0.10 -1.12 8.14 -2.39 -0.02 -1.14 16 34 H 0.42 -4.22 6.87 -92.70 -0.64 -4.86 16 35 H 0.12 -0.93 7.66 -2.39 -0.02 -0.95 16 36 H 0.12 -1.00 7.66 -2.39 -0.02 -1.01 16 37 H 0.11 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.12 0.13 7.96 -2.39 -0.02 0.11 16 39 H 0.39 -0.20 8.70 -74.06 -0.64 -0.84 16 40 H -0.28 -0.30 7.11 99.48 0.71 0.41 16 41 H -0.30 -1.90 7.11 99.48 0.71 -1.19 16 42 H 0.15 -0.94 4.87 -2.91 -0.01 -0.95 16 43 H 0.16 -1.54 8.06 -2.91 -0.02 -1.57 16 44 H 0.16 -1.27 6.30 -2.91 -0.02 -1.29 16 45 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 46 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.08 -0.69 7.60 -2.39 -0.02 -0.71 16 48 H 0.10 -1.53 6.39 -2.39 -0.02 -1.54 16 Total: 0.00 -38.31 395.70 -3.18 -41.50 By element: Atomic # 1 Polarization: -26.41 SS G_CDS: -0.24 Total: -26.65 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 4.12 Total: 21.75 kcal Atomic # 7 Polarization: 3.35 SS G_CDS: -1.87 Total: 1.48 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -6.96 Total: -27.31 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: 2.04 Total: 0.66 kcal Atomic # 16 Polarization: -11.16 SS G_CDS: -0.28 Total: -11.44 kcal Total: -38.31 -3.18 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_4860298.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.503 kcal (2) G-P(sol) polarization free energy of solvation -38.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds