Wall clock time and date at job start Tue Mar 9 2021 13:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35984 * 116.99922 * 2 1 4 4 C 1.38680 * 119.99589 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.99674 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.99803 * 179.97438 * 5 4 3 7 7 O 1.42893 * 109.47046 * 105.02426 * 6 5 4 8 8 Si 1.86296 * 109.47032 * 345.01993 * 6 5 4 9 9 C 1.38677 * 120.00233 * 359.97438 * 5 4 3 10 10 O 1.35978 * 120.00004 * 180.02562 * 9 5 4 11 11 C 1.42906 * 117.00118 * 180.02562 * 10 9 5 12 12 C 1.50695 * 109.47045 * 180.02562 * 11 10 9 13 13 O 1.21274 * 120.00413 * 0.27121 * 12 11 10 14 14 N 1.34784 * 119.99635 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 11 16 16 H 1.09007 * 109.47230 * 34.99566 * 15 14 12 17 17 C 1.52990 * 109.47333 * 154.99849 * 15 14 12 18 18 C 1.53005 * 109.47239 * 60.00001 * 17 15 14 19 19 C 1.53001 * 109.46842 * 60.00147 * 18 17 15 20 20 H 1.08996 * 109.47521 * 60.00405 * 19 18 17 21 21 S 1.81399 * 109.47016 * 180.02562 * 19 18 17 22 22 C 1.81399 * 101.92097 * 180.02562 * 21 19 18 23 23 O 1.42103 * 108.57767 * 294.48601 * 21 19 18 24 24 O 1.42099 * 108.57721 * 65.51161 * 21 19 18 25 25 C 1.52999 * 109.46922 * 299.99944 * 19 18 17 26 26 C 1.53000 * 109.47023 * 60.00496 * 25 19 18 27 27 C 1.38716 * 119.99802 * 0.27792 * 9 5 4 28 28 C 1.38110 * 120.00210 * 359.44418 * 27 9 5 29 29 H 1.08998 * 109.47362 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47175 * 299.99942 * 1 2 3 31 31 H 1.09007 * 109.47045 * 59.99745 * 1 2 3 32 32 H 1.07995 * 120.00164 * 0.02562 * 4 3 2 33 33 H 1.09005 * 109.47212 * 225.02011 * 6 5 4 34 34 H 0.96694 * 114.00783 * 60.00214 * 7 6 5 35 35 H 1.48494 * 110.00374 * 299.99975 * 8 6 5 36 36 H 1.48498 * 110.00052 * 61.32425 * 8 6 5 37 37 H 1.09005 * 109.47002 * 60.00044 * 11 10 9 38 38 H 1.09002 * 109.46834 * 300.00411 * 11 10 9 39 39 H 0.96999 * 120.00044 * 0.02562 * 14 12 11 40 40 H 1.08996 * 109.47542 * 180.02562 * 17 15 14 41 41 H 1.08997 * 109.47512 * 300.00175 * 17 15 14 42 42 H 1.08991 * 109.47259 * 179.97438 * 18 17 15 43 43 H 1.08996 * 109.47029 * 300.00528 * 18 17 15 44 44 H 1.09000 * 109.47228 * 59.99726 * 22 21 19 45 45 H 1.09007 * 109.47059 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.46869 * 299.99786 * 22 21 19 47 47 H 1.09007 * 109.46879 * 180.02562 * 25 19 18 48 48 H 1.08996 * 109.47625 * 300.00032 * 25 19 18 49 49 H 1.09005 * 109.47059 * 179.97438 * 26 25 19 50 50 H 1.09000 * 109.47596 * 60.00227 * 26 25 19 51 51 H 1.08004 * 120.00204 * 179.70330 * 27 9 5 52 52 H 1.07992 * 120.00485 * 180.27323 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4313 1.2841 0.0005 5 6 4.0585 2.5151 0.0000 6 6 5.5634 2.5939 0.0012 7 8 6.0218 2.9664 -1.2999 8 14 6.2719 0.9323 0.4572 9 6 3.3032 3.6781 -0.0016 10 8 3.9206 4.8897 -0.0027 11 6 3.0807 6.0459 -0.0037 12 6 3.9350 7.2873 -0.0054 13 8 5.1439 7.1915 -0.0107 14 7 3.3553 8.5041 -0.0061 15 6 4.1857 9.7110 -0.0072 16 1 5.0851 9.5328 -0.5968 17 6 3.3977 10.8717 -0.6174 18 6 2.1353 11.1220 0.2101 19 6 2.5284 11.4720 1.6467 20 1 3.1462 12.3699 1.6460 21 16 1.0318 11.7680 2.6281 22 6 1.7240 12.1581 4.2588 23 8 0.3816 12.9266 2.1239 24 8 0.3049 10.5507 2.7235 25 6 3.3165 10.3112 2.2569 26 6 4.5788 10.0610 1.4294 27 6 1.9180 3.6056 0.0031 28 6 1.2909 2.3750 -0.0021 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0194 0.3784 0.0005 33 1 5.8877 3.3389 0.7278 34 1 5.6916 3.8232 -1.6030 35 1 5.8026 0.5335 1.8084 36 1 5.8633 -0.0860 -0.5435 37 1 2.4514 6.0386 0.8863 38 1 2.4514 6.0369 -0.8937 39 1 2.3884 8.5807 -0.0052 40 1 4.0157 11.7696 -0.6187 41 1 3.1177 10.6225 -1.6409 42 1 1.5742 11.9492 -0.2244 43 1 1.5175 10.2241 0.2109 44 1 2.3650 13.0362 4.1808 45 1 0.9132 12.3605 4.9587 46 1 2.3097 11.3114 4.6168 47 1 3.5961 10.5603 3.2807 48 1 2.6987 9.4132 2.2578 49 1 5.1405 9.2342 1.8644 50 1 5.1968 10.9589 1.4287 51 1 1.3297 4.5113 0.0067 52 1 0.2124 2.3185 -0.0029 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_4974302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:33 Heat of formation + Delta-G solvation = -182.378799 kcal Electronic energy + Delta-G solvation = -36563.714500 eV Core-core repulsion = 31623.198012 eV Total energy + Delta-G solvation = -4940.516488 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.153 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.95683 -41.28833 -40.18494 -39.13986 -38.11520 -38.01035 -37.05968 -37.00422 -34.99798 -32.94803 -32.13494 -31.83117 -30.88645 -30.14813 -29.04730 -28.05662 -26.64817 -24.40791 -23.82710 -23.72675 -22.51548 -22.09099 -20.43201 -19.74942 -19.60804 -18.90557 -18.68109 -18.14048 -17.98989 -17.61109 -17.46903 -17.17604 -16.96323 -16.77839 -16.51402 -16.27738 -16.04860 -15.75552 -15.69370 -15.46402 -15.17901 -15.00466 -14.71397 -14.62605 -14.17793 -14.02399 -13.98455 -13.92125 -13.79843 -13.62409 -13.51155 -13.44697 -13.26743 -13.11282 -13.10558 -13.05118 -12.64669 -12.54290 -12.36808 -12.23472 -12.22324 -11.97556 -11.76140 -11.56108 -11.46526 -11.30311 -11.12756 -10.97709 -10.87792 -10.26096 -10.15343 -8.95645 -4.87212 -0.95100 -0.09169 0.19215 1.31547 1.42477 1.45079 1.59159 1.82298 1.89814 2.20832 2.40363 2.54476 2.70018 3.01808 3.40057 3.42217 3.46803 3.51539 3.61423 3.80906 3.82451 3.89188 3.93542 3.97058 4.00856 4.02266 4.05866 4.08357 4.10639 4.19312 4.23747 4.26158 4.31558 4.32299 4.39540 4.45471 4.53312 4.54632 4.66145 4.71534 4.85962 4.87825 4.96279 4.99247 5.00320 5.05552 5.06973 5.10163 5.15224 5.22109 5.27001 5.46777 6.03548 6.28315 6.41974 6.53641 7.10793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.341 6.341 3 C 0.088 3.912 4 C -0.141 4.141 5 C -0.118 4.118 6 C -0.084 4.084 7 O -0.544 6.544 8 Si 0.812 3.188 9 C 0.098 3.902 10 O -0.307 6.307 11 C 0.031 3.969 12 C 0.517 3.483 13 O -0.561 6.561 14 N -0.709 5.709 15 C 0.141 3.859 16 H 0.078 0.922 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.553 4.553 20 H 0.171 0.829 21 S 2.413 3.587 22 C -0.649 4.649 23 O -0.988 6.988 24 O -0.979 6.979 25 C -0.114 4.114 26 C -0.122 4.122 27 C -0.156 4.156 28 C -0.159 4.159 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.372 0.628 35 H -0.267 1.267 36 H -0.287 1.287 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.414 0.586 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.153 0.847 45 H 0.130 0.870 46 H 0.151 0.849 47 H 0.103 0.897 48 H 0.078 0.922 49 H 0.057 0.943 50 H 0.095 0.905 51 H 0.171 0.829 52 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.159 5.409 2.419 6.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.255 6.255 3 C 0.043 3.957 4 C -0.160 4.160 5 C -0.119 4.119 6 C -0.192 4.192 7 O -0.350 6.350 8 Si 0.714 3.286 9 C 0.053 3.947 10 O -0.220 6.220 11 C -0.047 4.047 12 C 0.303 3.697 13 O -0.439 6.439 14 N -0.364 5.364 15 C 0.037 3.963 16 H 0.096 0.904 17 C -0.149 4.149 18 C -0.157 4.157 19 C -0.664 4.664 20 H 0.189 0.811 21 S 2.602 3.398 22 C -0.801 4.801 23 O -0.985 6.985 24 O -0.976 6.976 25 C -0.152 4.152 26 C -0.161 4.161 27 C -0.175 4.175 28 C -0.178 4.178 29 H 0.133 0.867 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.098 0.902 34 H 0.220 0.780 35 H -0.193 1.193 36 H -0.215 1.215 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.252 0.748 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.172 0.828 45 H 0.149 0.851 46 H 0.169 0.831 47 H 0.121 0.879 48 H 0.097 0.903 49 H 0.076 0.924 50 H 0.113 0.887 51 H 0.189 0.811 52 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.839 3.818 2.418 4.879 hybrid contribution -1.505 1.093 -0.005 1.860 sum -3.344 4.911 2.413 6.412 Atomic orbital electron populations 1.23386 0.76002 1.05725 1.02595 1.86079 1.23827 1.26623 1.89009 1.18986 0.91741 0.85576 0.99364 1.20162 0.92801 0.96932 1.06086 1.19565 0.96916 0.90487 1.04917 1.25378 0.90963 1.14233 0.88608 1.86650 1.73846 1.42316 1.32208 0.92520 0.89926 0.69803 0.76361 1.18684 0.91460 0.84395 1.00196 1.86087 1.35159 1.11535 1.89217 1.22787 0.92996 0.82299 1.06618 1.20314 0.88297 0.85209 0.75910 1.90766 1.16139 1.87235 1.49726 1.45927 1.11322 1.04395 1.74753 1.21065 0.94295 0.83657 0.97234 0.90434 1.21727 0.95917 0.98128 0.99155 1.21481 0.99325 1.03486 0.91358 1.30090 1.18140 1.09584 1.08568 0.81135 1.07828 0.78486 0.73898 0.79574 1.30194 1.14901 1.14317 1.20684 1.93559 1.73614 1.51501 1.79860 1.93535 1.70269 1.46954 1.86849 1.21538 0.96972 0.96220 1.00453 1.21836 0.97187 1.02763 0.94364 1.21456 0.92302 0.99949 1.03755 1.21422 1.01648 0.90744 1.03978 0.86691 0.91195 0.91268 0.85766 0.90237 0.77964 1.19269 1.21460 0.86237 0.86005 0.74808 0.88175 0.89778 0.89209 0.90192 0.82828 0.85121 0.83057 0.87903 0.90343 0.92448 0.88668 0.81130 0.81839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.07 16 2 O -0.34 -2.33 10.50 -93.37 -0.98 -3.31 16 3 C 0.09 0.63 6.69 22.49 0.15 0.78 16 4 C -0.14 -1.43 8.59 22.35 0.19 -1.23 16 5 C -0.12 -1.02 5.28 -19.78 -0.10 -1.12 16 6 C -0.08 -0.66 2.33 71.24 0.17 -0.50 16 7 O -0.54 -5.18 12.65 -148.98 -1.89 -7.07 16 8 Si 0.81 4.44 30.40 68.60 2.09 6.52 16 9 C 0.10 0.46 6.62 22.49 0.15 0.61 16 10 O -0.31 -1.25 8.56 -74.27 -0.64 -1.88 16 11 C 0.03 -0.13 5.22 71.23 0.37 0.24 16 12 C 0.52 0.01 7.87 87.65 0.69 0.70 16 13 O -0.56 -5.61 16.16 16.02 0.26 -5.35 16 14 N -0.71 4.46 4.23 -442.54 -1.87 2.59 16 15 C 0.14 -0.88 2.78 44.99 0.13 -0.75 16 16 H 0.08 -0.13 7.57 -2.38 -0.02 -0.15 16 17 C -0.11 1.13 5.61 30.59 0.17 1.30 16 18 C -0.12 1.14 5.04 30.60 0.15 1.29 16 19 C -0.55 6.16 2.58 30.59 0.08 6.24 16 20 H 0.17 -2.85 8.14 -2.39 -0.02 -2.87 16 21 S 2.41 -12.59 4.88 -56.49 -0.28 -12.86 16 22 C -0.65 7.61 10.17 113.37 1.15 8.76 16 23 O -0.99 -4.06 18.10 -127.37 -2.30 -6.36 16 24 O -0.98 -2.18 17.91 -127.37 -2.28 -4.46 16 25 C -0.11 1.21 4.79 30.59 0.15 1.36 16 26 C -0.12 0.92 5.60 30.59 0.17 1.09 16 27 C -0.16 0.07 9.03 22.35 0.20 0.27 16 28 C -0.16 -0.16 9.03 22.35 0.20 0.04 16 29 H 0.11 -0.63 8.14 -2.39 -0.02 -0.65 16 30 H 0.07 -0.38 7.66 -2.39 -0.02 -0.40 16 31 H 0.07 -0.37 7.66 -2.38 -0.02 -0.39 16 32 H 0.12 1.42 4.93 -2.91 -0.01 1.41 16 33 H 0.08 0.57 7.83 -2.38 -0.02 0.56 16 34 H 0.37 2.54 8.59 -74.06 -0.64 1.90 16 35 H -0.27 -2.13 7.11 99.48 0.71 -1.42 16 36 H -0.29 -3.20 6.81 99.48 0.68 -2.52 16 37 H 0.12 -1.11 7.65 -2.38 -0.02 -1.13 16 38 H 0.12 -1.20 7.67 -2.39 -0.02 -1.22 16 39 H 0.41 -4.66 6.87 -92.71 -0.64 -5.29 16 40 H 0.10 -1.21 8.14 -2.39 -0.02 -1.23 16 41 H 0.08 -0.87 8.14 -2.39 -0.02 -0.89 16 42 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 43 H 0.08 -0.83 6.50 -2.39 -0.02 -0.85 16 44 H 0.15 -2.47 8.14 -2.39 -0.02 -2.49 16 45 H 0.13 -1.40 8.14 -2.39 -0.02 -1.42 16 46 H 0.15 -2.37 6.87 -2.39 -0.02 -2.39 16 47 H 0.10 -1.56 6.55 -2.38 -0.02 -1.57 16 48 H 0.08 -0.72 7.52 -2.39 -0.02 -0.73 16 49 H 0.06 -0.14 8.14 -2.38 -0.02 -0.16 16 50 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 51 H 0.17 -1.42 6.29 -2.91 -0.02 -1.44 16 52 H 0.16 -0.84 6.29 -2.91 -0.02 -0.86 16 Total: 0.00 -37.04 424.09 -3.05 -40.09 By element: Atomic # 1 Polarization: -27.75 SS G_CDS: -0.29 Total: -28.05 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 5.13 Total: 20.14 kcal Atomic # 7 Polarization: 4.46 SS G_CDS: -1.87 Total: 2.59 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -7.83 Total: -28.43 kcal Atomic # 14 Polarization: 4.44 SS G_CDS: 2.09 Total: 6.52 kcal Atomic # 16 Polarization: -12.59 SS G_CDS: -0.28 Total: -12.86 kcal Total: -37.04 -3.05 -40.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_4974302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.291 kcal (2) G-P(sol) polarization free energy of solvation -37.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds