Wall clock time and date at job start Tue Mar 9 2021 13:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 117.00015 * 2 1 4 4 C 1.38610 * 120.03360 * 180.27903 * 3 2 1 5 5 C 1.38652 * 119.89423 * 180.20915 * 4 3 2 6 6 O 1.35892 * 120.02828 * 179.78935 * 5 4 3 7 7 C 1.42897 * 117.00057 * 359.72290 * 6 5 4 8 8 C 1.50706 * 109.47519 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99246 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00094 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99581 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47020 * 35.00522 * 11 10 8 13 13 C 1.52997 * 109.46741 * 155.00249 * 11 10 8 14 14 C 1.53006 * 109.47445 * 60.00197 * 13 11 10 15 15 C 1.53002 * 109.46711 * 59.99695 * 14 13 11 16 16 H 1.09002 * 109.47070 * 60.00376 * 15 14 13 17 17 S 1.81404 * 109.46960 * 180.02562 * 15 14 13 18 18 C 1.81399 * 101.92308 * 180.02562 * 17 15 14 19 19 O 1.42102 * 108.57830 * 294.48899 * 17 15 14 20 20 O 1.42104 * 108.57880 * 65.51345 * 17 15 14 21 21 C 1.53000 * 109.47233 * 300.00001 * 15 14 13 22 22 C 1.53001 * 109.46886 * 60.00670 * 21 15 14 23 23 C 1.38752 * 119.94541 * 359.51381 * 5 4 3 24 24 C 1.50694 * 119.97293 * 180.23012 * 23 5 4 25 25 O 1.42896 * 109.47490 * 284.99741 * 24 23 5 26 26 Si 1.86310 * 109.46967 * 165.00118 * 24 23 5 27 27 C 1.38200 * 120.05338 * 0.25463 * 23 5 4 28 28 C 1.38158 * 120.10620 * 359.97438 * 27 23 5 29 29 H 1.08992 * 109.47315 * 299.99749 * 1 2 3 30 30 H 1.09003 * 109.47312 * 60.00271 * 1 2 3 31 31 H 1.09000 * 109.46843 * 179.97438 * 1 2 3 32 32 H 1.08005 * 120.04800 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47248 * 60.00244 * 7 6 5 34 34 H 1.08994 * 109.47530 * 300.00068 * 7 6 5 35 35 H 0.96991 * 120.00271 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47375 * 300.00330 * 13 11 10 37 37 H 1.09002 * 109.47497 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.46589 * 300.00331 * 14 13 11 39 39 H 1.08996 * 109.47165 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.47058 * 59.99801 * 18 17 15 41 41 H 1.08994 * 109.46922 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.46876 * 300.00595 * 18 17 15 43 43 H 1.09001 * 109.47194 * 179.97438 * 21 15 14 44 44 H 1.08992 * 109.47399 * 300.00166 * 21 15 14 45 45 H 1.09000 * 109.47437 * 180.02562 * 22 21 15 46 46 H 1.09002 * 109.47508 * 59.99571 * 22 21 15 47 47 H 1.09005 * 109.47176 * 45.00399 * 24 23 5 48 48 H 0.96693 * 114.00091 * 300.00456 * 25 24 23 49 49 H 1.48491 * 110.00012 * 58.67870 * 26 24 23 50 50 H 1.48502 * 109.99897 * 180.02562 * 26 24 23 51 51 H 1.07997 * 119.94716 * 180.02562 * 27 23 5 52 52 H 1.08005 * 119.96989 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4301 1.2842 -0.0058 5 6 4.0566 2.5211 -0.0014 6 8 5.4134 2.5962 -0.0028 7 6 6.1315 1.3608 -0.0027 8 6 7.6124 1.6404 -0.0050 9 8 8.0133 2.7851 -0.0061 10 7 8.4912 0.6185 -0.0048 11 6 9.9307 0.8905 -0.0076 12 1 10.1325 1.7860 0.5802 13 6 10.6754 -0.2986 0.6026 14 6 10.3923 -1.5557 -0.2224 15 6 10.8678 -1.3396 -1.6605 16 1 11.9389 -1.1373 -1.6625 17 16 10.5315 -2.8297 -2.6388 18 6 11.1641 -2.3566 -4.2718 19 8 11.3298 -3.8919 -2.1350 20 8 9.1240 -3.0028 -2.7308 21 6 10.1230 -0.1506 -2.2707 22 6 10.4063 1.1065 -1.4457 23 6 3.2970 3.6823 -0.0014 24 6 3.9772 5.0269 -0.0019 25 8 4.5038 5.2949 1.2992 26 14 2.7434 6.3469 -0.4563 27 6 1.9171 3.6066 -0.0004 28 6 1.2905 2.3752 0.0000 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0196 0.3793 -0.0100 33 1 5.8691 0.7879 -0.8921 34 1 5.8708 0.7890 0.8878 35 1 8.1705 -0.2968 -0.0036 36 1 10.3367 -0.4525 1.6272 37 1 11.7466 -0.0966 0.6002 38 1 9.3212 -1.7579 -0.2203 39 1 10.9232 -2.4026 0.2122 40 1 12.2266 -2.1250 -4.1967 41 1 11.0200 -3.1810 -4.9700 42 1 10.6255 -1.4791 -4.6298 43 1 10.4621 0.0037 -3.2951 44 1 9.0521 -0.3528 -2.2687 45 1 9.8753 1.9535 -1.8801 46 1 11.4774 1.3088 -1.4477 47 1 4.7894 5.0230 -0.7289 48 1 3.8355 5.3134 1.9978 49 1 1.6151 6.3413 0.5090 50 1 3.4021 7.6778 -0.4609 51 1 1.3275 4.5114 -0.0008 52 1 0.2120 2.3187 0.0003 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_4974312.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:40 Heat of formation + Delta-G solvation = -179.927730 kcal Electronic energy + Delta-G solvation = -36634.370302 eV Core-core repulsion = 31693.960100 eV Total energy + Delta-G solvation = -4940.410202 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.153 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.88813 -41.26289 -40.09056 -39.16309 -38.29468 -38.01237 -37.05386 -37.00991 -35.01743 -32.34489 -32.14256 -31.89849 -31.10054 -30.14828 -29.02196 -28.33897 -26.13703 -24.36485 -23.83248 -23.63138 -22.51377 -22.06426 -20.45846 -19.95130 -19.72875 -18.74878 -18.22174 -18.00062 -17.79082 -17.56605 -17.33955 -17.05688 -16.93027 -16.70978 -16.52800 -16.42863 -16.20218 -15.97401 -15.73927 -15.25675 -15.17798 -15.00036 -14.72979 -14.63089 -14.50348 -14.00923 -13.92572 -13.81158 -13.75227 -13.49293 -13.45944 -13.34612 -13.27069 -13.13530 -13.10290 -13.04502 -12.60918 -12.48137 -12.30476 -12.23481 -12.03990 -11.97084 -11.76770 -11.66774 -11.62981 -11.47732 -11.01795 -10.88433 -10.51491 -10.18015 -9.71650 -9.11460 -4.92395 -0.94692 0.18903 0.29646 1.31971 1.42173 1.44492 1.56404 1.82789 1.96347 2.24436 2.55047 2.58247 2.70421 3.02188 3.41397 3.48400 3.49514 3.53686 3.71113 3.79431 3.80105 3.90580 3.93700 3.98498 4.05103 4.05821 4.08362 4.15832 4.18058 4.24137 4.33639 4.38497 4.39816 4.41770 4.44071 4.45777 4.52443 4.65792 4.70694 4.78069 4.87408 4.94512 4.99861 5.01544 5.05511 5.09082 5.13876 5.20739 5.22589 5.26719 5.43377 5.47678 6.11420 6.34485 6.41150 6.57162 7.08596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.164 3.836 4 C -0.254 4.254 5 C 0.177 3.823 6 O -0.300 6.300 7 C 0.030 3.970 8 C 0.517 3.483 9 O -0.563 6.563 10 N -0.708 5.708 11 C 0.140 3.860 12 H 0.075 0.925 13 C -0.110 4.110 14 C -0.118 4.118 15 C -0.553 4.553 16 H 0.172 0.828 17 S 2.413 3.587 18 C -0.648 4.648 19 O -0.988 6.988 20 O -0.979 6.979 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.195 4.195 24 C -0.077 4.077 25 O -0.549 6.549 26 Si 0.781 3.219 27 C -0.041 4.041 28 C -0.237 4.237 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.150 0.850 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.414 0.586 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.154 0.846 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.105 0.895 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.381 0.619 49 H -0.263 1.263 50 H -0.307 1.307 51 H 0.157 0.843 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 -2.297 -3.326 4.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.118 3.882 4 C -0.273 4.273 5 C 0.131 3.869 6 O -0.212 6.212 7 C -0.048 4.048 8 C 0.303 3.697 9 O -0.440 6.440 10 N -0.363 5.363 11 C 0.036 3.964 12 H 0.093 0.907 13 C -0.149 4.149 14 C -0.157 4.157 15 C -0.664 4.664 16 H 0.190 0.810 17 S 2.602 3.398 18 C -0.800 4.800 19 O -0.985 6.985 20 O -0.976 6.976 21 C -0.152 4.152 22 C -0.161 4.161 23 C -0.196 4.196 24 C -0.185 4.185 25 O -0.357 6.357 26 Si 0.685 3.315 27 C -0.058 4.058 28 C -0.255 4.255 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.168 0.832 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.252 0.748 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.172 0.828 41 H 0.150 0.850 42 H 0.170 0.830 43 H 0.123 0.877 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.230 0.770 49 H -0.189 1.189 50 H -0.236 1.236 51 H 0.174 0.826 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.785 -1.653 -3.150 3.980 hybrid contribution 0.316 -0.121 1.059 1.112 sum -1.469 -1.775 -2.090 3.111 Atomic orbital electron populations 1.23402 0.75980 1.05680 1.02723 1.86062 1.23792 1.26640 1.87925 1.18878 0.91630 0.85011 0.92687 1.20557 0.93476 0.97440 1.15825 1.18588 0.81770 0.93124 0.93465 1.86215 1.15462 1.31450 1.88097 1.22762 0.89069 0.86569 1.06358 1.20328 0.88239 0.85293 0.75886 1.90770 1.80607 1.22901 1.49746 1.45923 1.06393 1.09263 1.74758 1.21088 0.78665 0.99219 0.97395 0.90733 1.21729 1.02180 0.91846 0.99132 1.21480 1.02506 1.00214 0.91460 1.30097 1.12344 1.15504 1.08467 0.81037 1.07828 0.74694 0.77635 0.79631 1.30182 1.15182 1.14056 1.20560 1.93557 1.71869 1.53154 1.79904 1.93541 1.31261 1.85957 1.86876 1.21537 1.00803 0.92315 1.00510 1.21833 1.02994 0.97044 0.94229 1.19611 0.93496 0.93947 1.12549 1.25165 1.06309 0.99652 0.87356 1.86645 1.38560 1.93050 1.17447 0.94095 0.75441 0.73342 0.88609 1.20955 0.92019 0.98790 0.94060 1.21399 1.01614 0.91195 1.11340 0.91426 0.91046 0.86637 0.83230 0.86188 0.86671 0.74810 0.89914 0.88019 0.90347 0.89079 0.82780 0.85032 0.83028 0.87700 0.90431 0.92553 0.88530 0.88395 0.77032 1.18864 1.23573 0.82613 0.82466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.62 10.49 -92.43 -0.97 -1.59 16 3 C 0.16 0.43 6.68 22.49 0.15 0.58 16 4 C -0.25 -0.86 8.97 22.46 0.20 -0.66 16 5 C 0.18 1.11 6.66 22.49 0.15 1.26 16 6 O -0.30 -2.68 8.99 -73.30 -0.66 -3.34 16 7 C 0.03 0.03 5.22 71.24 0.37 0.40 16 8 C 0.52 2.40 7.87 87.66 0.69 3.09 16 9 O -0.56 -8.52 16.16 16.00 0.26 -8.26 16 10 N -0.71 1.86 4.23 -442.52 -1.87 -0.02 16 11 C 0.14 -0.46 2.78 44.99 0.13 -0.34 16 12 H 0.07 0.12 7.58 -2.39 -0.02 0.10 16 13 C -0.11 0.87 5.61 30.60 0.17 1.04 16 14 C -0.12 0.90 5.04 30.60 0.15 1.05 16 15 C -0.55 5.26 2.58 30.60 0.08 5.34 16 16 H 0.17 -2.63 8.14 -2.39 -0.02 -2.65 16 17 S 2.41 -9.37 4.88 -56.49 -0.28 -9.64 16 18 C -0.65 6.99 10.17 113.37 1.15 8.14 16 19 O -0.99 -5.18 18.10 -127.37 -2.30 -7.48 16 20 O -0.98 -3.78 17.91 -127.37 -2.28 -6.06 16 21 C -0.11 0.99 4.79 30.59 0.15 1.14 16 22 C -0.12 0.63 5.60 30.60 0.17 0.81 16 23 C -0.19 -0.91 5.27 -19.75 -0.10 -1.02 16 24 C -0.08 -0.47 2.37 71.23 0.17 -0.30 16 25 O -0.55 -5.50 12.88 -148.98 -1.92 -7.42 16 26 Si 0.78 0.49 30.24 68.60 2.07 2.56 16 27 C -0.04 -0.01 8.65 22.24 0.19 0.19 16 28 C -0.24 0.11 9.04 22.38 0.20 0.31 16 29 H 0.07 -0.50 7.66 -2.39 -0.02 -0.52 16 30 H 0.07 -0.56 7.66 -2.39 -0.02 -0.58 16 31 H 0.12 -0.97 8.14 -2.39 -0.02 -0.99 16 32 H 0.15 -0.05 6.30 -2.91 -0.02 -0.06 16 33 H 0.12 -0.52 7.65 -2.39 -0.02 -0.54 16 34 H 0.12 -0.42 7.67 -2.39 -0.02 -0.44 16 35 H 0.41 -3.15 6.87 -92.71 -0.64 -3.79 16 36 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 38 H 0.08 -0.62 6.51 -2.39 -0.02 -0.64 16 39 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.15 -2.35 8.14 -2.39 -0.02 -2.37 16 41 H 0.13 -1.30 8.14 -2.39 -0.02 -1.32 16 42 H 0.15 -2.23 6.87 -2.39 -0.02 -2.25 16 43 H 0.10 -1.44 6.56 -2.39 -0.02 -1.45 16 44 H 0.08 -0.54 7.52 -2.39 -0.02 -0.55 16 45 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 47 H 0.10 0.89 7.82 -2.38 -0.02 0.87 16 48 H 0.38 0.99 8.70 -74.06 -0.64 0.34 16 49 H -0.26 -0.24 6.68 99.48 0.66 0.42 16 50 H -0.31 -2.74 7.11 99.48 0.71 -2.03 16 51 H 0.16 -0.65 4.85 -2.91 -0.01 -0.67 16 52 H 0.16 -0.90 6.29 -2.91 -0.02 -0.92 16 Total: 0.00 -39.38 424.58 -3.12 -42.50 By element: Atomic # 1 Polarization: -22.98 SS G_CDS: -0.31 Total: -23.30 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 5.14 Total: 22.05 kcal Atomic # 7 Polarization: 1.86 SS G_CDS: -1.87 Total: -0.02 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -7.88 Total: -34.16 kcal Atomic # 14 Polarization: 0.49 SS G_CDS: 2.07 Total: 2.56 kcal Atomic # 16 Polarization: -9.37 SS G_CDS: -0.28 Total: -9.64 kcal Total: -39.38 -3.12 -42.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_4974312.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.424 kcal (2) G-P(sol) polarization free energy of solvation -39.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds