Wall clock time and date at job start Tue Mar 9 2021 13:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37648 * 125.67261 * 2 1 4 4 C 1.46663 * 126.22535 * 359.97438 * 3 2 1 5 5 O 1.21702 * 120.00406 * 3.94272 * 4 3 2 6 6 N 1.34776 * 119.99997 * 183.93983 * 4 3 2 7 7 C 1.46500 * 120.00338 * 174.54307 * 6 4 3 8 8 H 1.09005 * 109.47081 * 325.00443 * 7 6 4 9 9 C 1.52996 * 109.47080 * 85.00036 * 7 6 4 10 10 C 1.53000 * 109.47227 * 60.00541 * 9 7 6 11 11 C 1.52995 * 109.47290 * 59.99636 * 10 9 7 12 12 H 1.09001 * 109.46963 * 60.00031 * 11 10 9 13 13 S 1.81398 * 109.47373 * 180.02562 * 11 10 9 14 14 C 1.81404 * 101.92020 * 304.99924 * 13 11 10 15 15 O 1.42094 * 108.58064 * 59.48452 * 13 11 10 16 16 O 1.42099 * 108.57803 * 190.51591 * 13 11 10 17 17 C 1.53004 * 109.47218 * 300.00566 * 11 10 9 18 18 C 1.52998 * 109.47613 * 205.00597 * 7 6 4 19 19 C 1.37882 * 107.54540 * 179.71974 * 3 2 1 20 20 C 1.39879 * 107.09764 * 0.24249 * 19 3 2 21 21 Br 1.89095 * 126.07747 * 179.97438 * 20 19 3 22 22 C 1.35506 * 107.85000 * 0.02562 * 20 19 3 23 23 C 1.50702 * 125.56991 * 180.02562 * 22 20 19 24 24 O 1.42897 * 109.47250 * 122.59307 * 23 22 20 25 25 Si 1.86302 * 109.46708 * 242.58641 * 23 22 20 26 26 H 1.09001 * 109.47243 * 84.40324 * 1 2 3 27 27 H 1.09008 * 109.47102 * 204.40097 * 1 2 3 28 28 H 1.08998 * 109.47527 * 324.40226 * 1 2 3 29 29 H 0.96998 * 119.99837 * 354.54813 * 6 4 3 30 30 H 1.08999 * 109.47341 * 180.02562 * 9 7 6 31 31 H 1.09006 * 109.47473 * 300.00059 * 9 7 6 32 32 H 1.08995 * 109.47398 * 180.02562 * 10 9 7 33 33 H 1.08999 * 109.46657 * 300.00048 * 10 9 7 34 34 H 1.09003 * 109.46681 * 59.99849 * 14 13 11 35 35 H 1.09002 * 109.47276 * 179.97438 * 14 13 11 36 36 H 1.09003 * 109.47145 * 300.00301 * 14 13 11 37 37 H 1.09001 * 109.46716 * 299.99615 * 17 11 10 38 38 H 1.08997 * 109.47085 * 179.97438 * 17 11 10 39 39 H 1.08999 * 109.47344 * 180.02562 * 18 7 6 40 40 H 1.09000 * 109.47437 * 59.99541 * 18 7 6 41 41 H 1.08002 * 126.45194 * 180.23813 * 19 3 2 42 42 H 1.08995 * 109.47336 * 2.58618 * 23 22 20 43 43 H 0.96702 * 114.00154 * 179.97438 * 24 23 22 44 44 H 1.48501 * 110.00255 * 292.63310 * 25 23 22 45 45 H 1.48505 * 110.00020 * 53.95185 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2677 1.1182 0.0000 4 6 1.8120 2.5122 -0.0005 5 8 0.6235 2.7640 0.0714 6 7 2.7094 3.5145 -0.0807 7 6 2.2507 4.9006 -0.2018 8 1 1.3410 4.9312 -0.8014 9 6 1.9630 5.4661 1.1905 10 6 3.2399 5.4232 2.0322 11 6 4.3255 6.2624 1.3553 12 1 3.9841 7.2936 1.2651 13 16 5.8396 6.2110 2.3529 14 6 5.2409 6.7693 3.9717 15 8 6.2605 4.8587 2.4677 16 8 6.7479 7.1799 1.8474 17 6 4.6131 5.6969 -0.0370 18 6 3.3362 5.7398 -0.8788 19 6 3.5780 0.6892 0.0064 20 6 3.5529 -0.7093 0.0047 21 35 5.0610 -1.8502 0.0106 22 6 2.2559 -1.1015 -0.0032 23 6 1.7715 -2.5285 -0.0071 24 8 0.9245 -2.7472 1.1228 25 14 0.8153 -2.8554 -1.5723 26 1 -0.3634 0.1002 -1.0228 27 1 -0.3634 -0.9359 0.4246 28 1 -0.3634 0.8356 0.5982 29 1 3.6591 3.3182 -0.0582 30 1 1.6213 6.4972 1.1004 31 1 1.1896 4.8682 1.6728 32 1 3.0349 5.8256 3.0242 33 1 3.5812 4.3920 2.1223 34 1 4.4698 6.0866 4.3290 35 1 6.0692 6.7841 4.6801 36 1 4.8237 7.7720 3.8787 37 1 4.9545 4.6657 0.0531 38 1 5.3862 6.2950 -0.5195 39 1 2.9951 6.7712 -0.9685 40 1 3.5412 5.3370 -1.8707 41 1 4.4582 1.3152 0.0118 42 1 2.6265 -3.2026 0.0438 43 1 0.5750 -3.6467 1.1843 44 1 -0.4459 -2.0714 -1.5701 45 1 1.6370 -2.4922 -2.7547 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_5000100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:45 Heat of formation + Delta-G solvation = -84.318457 kcal Electronic energy + Delta-G solvation = -31434.490215 eV Core-core repulsion = 27014.110172 eV Total energy + Delta-G solvation = -4420.380043 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.044 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.98147 -41.11941 -39.11447 -38.02663 -37.76640 -37.06840 -35.34119 -34.43139 -32.63593 -32.16187 -31.33931 -30.75230 -30.08445 -27.52348 -27.00010 -24.21256 -23.84889 -23.36217 -21.94169 -20.57526 -20.38200 -19.74310 -19.10384 -18.56428 -18.02890 -17.35273 -17.18022 -17.12828 -16.99903 -16.51016 -16.29345 -16.02438 -15.56060 -15.36290 -15.09841 -14.76162 -14.68661 -14.48523 -14.38433 -14.24608 -14.01813 -13.95123 -13.89398 -13.79562 -13.50288 -13.36184 -13.26080 -13.12896 -13.05672 -12.84651 -12.60650 -12.25850 -12.14432 -12.01106 -11.98885 -11.79280 -11.51466 -11.41396 -11.16749 -10.90000 -10.67071 -10.26650 -9.92765 -9.39442 -5.13512 -0.96070 0.01868 0.51020 0.86582 1.21924 1.36196 1.53509 1.81025 1.85354 2.04031 2.17670 2.68749 3.01489 3.07183 3.38517 3.42990 3.49894 3.57887 3.64274 3.77965 3.89085 3.96329 4.01768 4.03732 4.05923 4.15424 4.21724 4.22478 4.35891 4.37033 4.41017 4.44308 4.50033 4.58079 4.69145 4.84502 4.90381 4.97811 5.04035 5.06896 5.10380 5.14053 5.19369 5.40268 5.47882 5.69577 6.28725 6.74893 6.94135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.398 5.398 3 C -0.053 4.053 4 C 0.592 3.408 5 O -0.570 6.570 6 N -0.700 5.700 7 C 0.143 3.857 8 H 0.082 0.918 9 C -0.120 4.120 10 C -0.116 4.116 11 C -0.551 4.551 12 H 0.175 0.825 13 S 2.411 3.589 14 C -0.648 4.648 15 O -0.980 6.980 16 O -0.987 6.987 17 C -0.120 4.120 18 C -0.111 4.111 19 C -0.108 4.108 20 C -0.178 4.178 21 Br -0.010 7.010 22 C 0.079 3.921 23 C -0.060 4.060 24 O -0.557 6.557 25 Si 0.776 3.224 26 H 0.075 0.925 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.411 0.589 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.150 0.850 35 H 0.131 0.869 36 H 0.156 0.844 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.176 0.824 42 H 0.108 0.892 43 H 0.411 0.589 44 H -0.270 1.270 45 H -0.298 1.298 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.038 -0.503 0.557 4.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.071 5.071 3 C -0.168 4.168 4 C 0.380 3.620 5 O -0.451 6.451 6 N -0.353 5.353 7 C 0.039 3.961 8 H 0.101 0.899 9 C -0.160 4.160 10 C -0.154 4.154 11 C -0.662 4.662 12 H 0.192 0.808 13 S 2.600 3.400 14 C -0.800 4.800 15 O -0.978 6.978 16 O -0.984 6.984 17 C -0.158 4.158 18 C -0.150 4.150 19 C -0.135 4.135 20 C -0.263 4.263 21 Br 0.074 6.926 22 C -0.042 4.042 23 C -0.169 4.169 24 O -0.368 6.368 25 Si 0.679 3.321 26 H 0.094 0.906 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.249 0.751 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.168 0.832 35 H 0.150 0.850 36 H 0.174 0.826 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.194 0.806 42 H 0.125 0.875 43 H 0.264 0.736 44 H -0.196 1.196 45 H -0.225 1.225 Dipole moment (debyes) X Y Z Total from point charges -4.015 0.032 -0.245 4.022 hybrid contribution -0.106 0.662 0.516 0.847 sum -4.121 0.695 0.271 4.188 Atomic orbital electron populations 1.22558 0.74667 1.06565 1.04089 1.43944 1.07598 1.04238 1.51353 1.20289 0.90183 0.88229 1.18049 1.16873 0.85601 0.83478 0.76066 1.90797 1.17188 1.85058 1.52041 1.45802 1.09908 1.06111 1.73459 1.21171 0.98417 0.78946 0.97568 0.89948 1.21832 0.96758 1.02912 0.94460 1.21571 0.93871 0.99942 1.00041 1.30083 1.16406 1.11095 1.08658 0.80791 1.07880 0.78235 0.74216 0.79668 1.30191 1.14469 1.14902 1.20437 1.93547 1.81055 1.36403 1.86749 1.93557 1.61716 1.63282 1.79854 1.21488 0.99982 1.02117 0.92248 1.21752 0.92810 1.01878 0.98515 1.21531 0.95622 0.93148 1.03237 1.20981 0.91505 0.94988 1.18863 1.96656 1.35151 1.62616 1.98188 1.20095 0.89215 0.89060 1.05843 1.24522 1.00772 0.90178 1.01470 1.86409 1.66474 1.38516 1.45371 0.94737 0.76912 0.88950 0.71538 0.90646 0.87077 0.88266 0.75124 0.88127 0.92315 0.87540 0.91004 0.83162 0.85040 0.82616 0.90712 0.89035 0.87529 0.89904 0.80624 0.87458 0.73604 1.19565 1.22544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 8.57 127.77 1.09 1.41 16 2 N -0.40 -3.02 3.12 -519.61 -1.62 -4.64 16 3 C -0.05 -0.38 6.89 40.35 0.28 -0.10 16 4 C 0.59 3.65 7.73 86.44 0.67 4.32 16 5 O -0.57 -6.46 14.43 -4.35 -0.06 -6.52 16 6 N -0.70 0.38 4.22 -446.51 -1.88 -1.51 16 7 C 0.14 -0.51 2.74 44.99 0.12 -0.38 16 8 H 0.08 -0.03 7.66 -2.38 -0.02 -0.05 16 9 C -0.12 0.66 5.60 30.59 0.17 0.84 16 10 C -0.12 0.91 4.75 30.59 0.15 1.06 16 11 C -0.55 4.75 2.62 30.59 0.08 4.83 16 12 H 0.17 -2.58 8.14 -2.39 -0.02 -2.60 16 13 S 2.41 -6.18 4.90 -56.49 -0.28 -6.46 16 14 C -0.65 6.26 10.01 113.37 1.14 7.40 16 15 O -0.98 -5.66 18.06 -127.37 -2.30 -7.96 16 16 O -0.99 -6.16 18.10 -127.37 -2.30 -8.47 16 17 C -0.12 0.78 5.03 30.60 0.15 0.94 16 18 C -0.11 0.86 5.61 30.59 0.17 1.03 16 19 C -0.11 -0.55 10.34 22.58 0.23 -0.32 16 20 C -0.18 -1.18 6.53 22.04 0.14 -1.04 16 21 Br -0.01 -0.05 33.05 -20.37 -0.67 -0.72 16 22 C 0.08 0.50 5.17 41.35 0.21 0.71 16 23 C -0.06 0.01 2.78 71.24 0.20 0.21 16 24 O -0.56 1.13 11.45 -148.98 -1.71 -0.58 16 25 Si 0.78 -1.74 31.18 68.60 2.14 0.40 16 26 H 0.08 0.38 7.76 -2.39 -0.02 0.36 16 27 H 0.11 0.27 5.74 -2.38 -0.01 0.26 16 28 H 0.10 0.69 6.56 -2.39 -0.02 0.68 16 29 H 0.41 -1.43 5.76 -92.71 -0.53 -1.96 16 30 H 0.10 -0.95 8.14 -2.39 -0.02 -0.97 16 31 H 0.06 -0.03 8.08 -2.38 -0.02 -0.05 16 32 H 0.11 -1.38 6.39 -2.39 -0.02 -1.40 16 33 H 0.07 -0.35 7.60 -2.39 -0.02 -0.36 16 34 H 0.15 -2.00 6.77 -2.39 -0.02 -2.01 16 35 H 0.13 -1.16 8.14 -2.39 -0.02 -1.17 16 36 H 0.16 -2.27 8.14 -2.39 -0.02 -2.28 16 37 H 0.07 -0.43 6.51 -2.39 -0.02 -0.44 16 38 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.11 -1.15 8.14 -2.39 -0.02 -1.17 16 40 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 41 H 0.18 -0.01 7.45 -2.91 -0.02 -0.03 16 42 H 0.11 -0.26 6.94 -2.39 -0.02 -0.28 16 43 H 0.41 -5.31 8.74 -74.06 -0.65 -5.96 16 44 H -0.27 -0.44 6.14 99.48 0.61 0.17 16 45 H -0.30 -1.73 7.11 99.48 0.71 -1.03 16 Total: 0.00 -33.09 385.08 -4.06 -37.16 By element: Atomic # 1 Polarization: -21.42 SS G_CDS: -0.19 Total: -21.61 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: 4.81 Total: 20.91 kcal Atomic # 7 Polarization: -2.64 SS G_CDS: -3.50 Total: -6.15 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -6.37 Total: -23.53 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: 2.14 Total: 0.40 kcal Atomic # 16 Polarization: -6.18 SS G_CDS: -0.28 Total: -6.46 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -0.67 Total: -0.72 kcal Total: -33.09 -4.06 -37.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_5000100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.161 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds