Wall clock time and date at job start Tue Mar 9 2021 13:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42103 * 108.57662 * 2 1 4 4 O 1.42097 * 108.57752 * 131.02701 * 2 1 3 5 5 C 1.81393 * 101.91953 * 245.51438 * 2 1 3 6 6 H 1.08999 * 109.47264 * 299.99812 * 5 2 1 7 7 C 1.52995 * 109.47545 * 59.99722 * 5 2 1 8 8 C 1.53003 * 109.47629 * 179.97438 * 7 5 2 9 9 C 1.53006 * 109.47086 * 300.00265 * 8 7 5 10 10 H 1.08997 * 109.46915 * 179.97438 * 9 8 7 11 11 N 1.46491 * 109.47266 * 299.99849 * 9 8 7 12 12 C 1.34781 * 119.99825 * 274.99861 * 11 9 8 13 13 O 1.21280 * 119.99916 * 0.02562 * 12 11 9 14 14 C 1.50705 * 119.99794 * 179.97438 * 12 11 9 15 15 O 1.42900 * 109.46713 * 179.97438 * 14 12 11 16 16 C 1.35922 * 116.99548 * 180.02562 * 15 14 12 17 17 C 1.38798 * 120.05568 * 180.02562 * 16 15 14 18 18 Br 1.89094 * 120.03532 * 0.02562 * 17 16 15 19 19 C 1.38240 * 119.92674 * 180.02562 * 17 16 15 20 20 C 1.38240 * 120.04414 * 359.97438 * 19 17 16 21 21 C 1.50701 * 119.94133 * 180.02562 * 20 19 17 22 22 O 1.42899 * 109.46909 * 65.00267 * 21 20 19 23 23 Si 1.86295 * 109.47245 * 185.00353 * 21 20 19 24 24 C 1.38285 * 120.12076 * 0.02889 * 20 19 17 25 25 C 1.38145 * 120.07198 * 359.67486 * 24 20 19 26 26 C 1.53000 * 109.47069 * 59.99757 * 9 8 7 27 27 C 1.53003 * 109.47365 * 300.00072 * 26 9 8 28 28 H 1.09001 * 109.47190 * 174.48543 * 1 2 3 29 29 H 1.09004 * 109.47089 * 294.48676 * 1 2 3 30 30 H 1.09004 * 109.47568 * 54.48686 * 1 2 3 31 31 H 1.08997 * 109.47793 * 300.00217 * 7 5 2 32 32 H 1.09004 * 109.46905 * 60.00517 * 7 5 2 33 33 H 1.08998 * 109.47472 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.46571 * 59.99941 * 8 7 5 35 35 H 0.97000 * 120.00296 * 94.99640 * 11 9 8 36 36 H 1.08998 * 109.47093 * 300.00212 * 14 12 11 37 37 H 1.09001 * 109.46675 * 60.00483 * 14 12 11 38 38 H 1.07990 * 119.97568 * 179.97438 * 19 17 16 39 39 H 1.09004 * 109.46851 * 305.00326 * 21 20 19 40 40 H 0.96697 * 113.99947 * 180.02562 * 22 21 20 41 41 H 1.48501 * 110.00022 * 299.99873 * 23 21 20 42 42 H 1.48493 * 110.00045 * 61.31877 * 23 21 20 43 43 H 1.08001 * 119.96742 * 179.97438 * 24 20 19 44 44 H 1.07998 * 120.02761 * 180.30370 * 25 24 20 45 45 H 1.08998 * 109.47304 * 179.97438 * 26 9 8 46 46 H 1.09004 * 109.47202 * 59.99364 * 26 9 8 47 47 H 1.09000 * 109.46571 * 300.00262 * 27 26 9 48 48 H 1.08998 * 109.47472 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0161 5 6 2.1886 -0.7356 -1.6152 6 1 1.7610 -1.7369 -1.6665 7 6 1.5883 0.1326 -2.7227 8 6 1.9048 -0.4875 -4.0851 9 6 3.4217 -0.5703 -4.2678 10 1 3.6471 -1.0125 -5.2382 11 7 3.9961 0.7755 -4.1986 12 6 4.0354 1.5490 -5.3016 13 8 3.5948 1.1309 -6.3514 14 6 4.6258 2.9337 -5.2303 15 8 4.5535 3.5492 -6.5179 16 6 5.0477 4.8106 -6.6274 17 6 5.0092 5.4687 -7.8489 18 35 4.2685 4.6115 -9.3629 19 6 5.5131 6.7514 -7.9574 20 6 6.0541 7.3784 -6.8505 21 6 6.6022 8.7770 -6.9712 22 8 5.5392 9.6799 -7.2823 23 14 7.3896 9.2768 -5.3585 24 6 6.0934 6.7245 -5.6326 25 6 5.5858 5.4449 -5.5173 26 6 4.0220 -1.4386 -3.1603 27 6 3.7055 -0.8185 -1.7978 28 1 -0.3633 -1.0229 -0.0988 29 1 -0.3633 0.4260 0.9353 30 1 -0.3634 0.5970 -0.8365 31 1 0.5078 0.1920 -2.5924 32 1 2.0160 1.1339 -2.6715 33 1 1.4775 0.1313 -4.8742 34 1 1.4775 -1.4889 -4.1366 35 1 4.3481 1.1100 -3.3589 36 1 4.0663 3.5305 -4.5099 37 1 5.6678 2.8687 -4.9170 38 1 5.4840 7.2640 -8.9074 39 1 7.3487 8.8074 -7.7649 40 1 5.8197 10.6006 -7.3754 41 1 6.3820 9.2394 -4.2683 42 1 8.5171 8.3646 -5.0396 43 1 6.5171 7.2165 -4.7696 44 1 5.6124 4.9368 -4.5647 45 1 5.1026 -1.4980 -3.2906 46 1 3.5946 -2.4400 -3.2117 47 1 4.1329 0.1829 -1.7464 48 1 4.1328 -1.4373 -1.0088 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_6201210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:55 Heat of formation + Delta-G solvation = -138.392200 kcal Electronic energy + Delta-G solvation = -33794.906234 eV Core-core repulsion = 28990.698956 eV Total energy + Delta-G solvation = -4804.207278 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 448.048 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.85921 -41.15034 -39.59470 -38.78543 -38.03928 -37.26959 -37.07767 -35.04254 -33.78079 -32.23664 -32.13903 -31.66552 -30.56626 -30.17564 -29.21502 -26.35802 -24.48926 -23.92237 -23.83557 -22.52055 -22.01974 -20.47766 -19.78168 -19.66927 -18.71044 -18.35387 -18.01888 -17.63841 -17.45680 -17.21294 -16.98808 -16.79790 -16.46126 -16.28711 -15.97072 -15.65534 -15.52023 -15.20687 -15.02254 -14.71405 -14.68870 -14.23877 -14.09648 -14.01142 -13.95909 -13.91782 -13.74927 -13.59626 -13.48990 -13.29026 -13.12674 -13.06962 -12.66706 -12.60943 -12.34967 -12.25000 -12.20015 -12.02780 -11.99551 -11.92557 -11.78644 -11.49445 -11.29631 -11.05118 -10.90444 -10.31060 -10.19870 -10.10396 -9.44664 -4.91068 -0.97013 -0.23942 -0.02413 0.51060 1.31390 1.33243 1.39674 1.67598 1.80300 1.96487 2.21695 2.43250 2.67949 2.99734 3.29155 3.38402 3.40247 3.48845 3.53405 3.60906 3.78474 3.83295 3.89987 3.92696 3.93478 3.95432 4.02589 4.05751 4.16252 4.18681 4.21685 4.36924 4.41297 4.43078 4.50700 4.52368 4.68654 4.69556 4.79636 4.85479 4.93039 4.98036 5.04084 5.07344 5.07642 5.12016 5.19108 5.31279 5.43036 5.90816 6.36211 6.91978 7.06208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.413 3.587 3 O -0.979 6.979 4 O -0.987 6.987 5 C -0.553 4.553 6 H 0.172 0.828 7 C -0.114 4.114 8 C -0.122 4.122 9 C 0.141 3.859 10 H 0.076 0.924 11 N -0.708 5.708 12 C 0.516 3.484 13 O -0.560 6.560 14 C 0.026 3.974 15 O -0.298 6.298 16 C 0.150 3.850 17 C -0.140 4.140 18 Br -0.041 7.041 19 C -0.029 4.029 20 C -0.119 4.119 21 C -0.079 4.079 22 O -0.565 6.565 23 Si 0.775 3.225 24 C -0.077 4.077 25 C -0.192 4.192 26 C -0.110 4.110 27 C -0.118 4.118 28 H 0.154 0.846 29 H 0.131 0.869 30 H 0.151 0.849 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.414 0.586 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.150 0.850 39 H 0.095 0.905 40 H 0.404 0.596 41 H -0.290 1.290 42 H -0.283 1.283 43 H 0.137 0.863 44 H 0.172 0.828 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.079 0.921 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 1.570 3.482 4.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.602 3.398 3 O -0.976 6.976 4 O -0.984 6.984 5 C -0.664 4.664 6 H 0.189 0.811 7 C -0.152 4.152 8 C -0.162 4.162 9 C 0.037 3.963 10 H 0.095 0.905 11 N -0.363 5.363 12 C 0.302 3.698 13 O -0.438 6.438 14 C -0.052 4.052 15 O -0.210 6.210 16 C 0.102 3.898 17 C -0.220 4.220 18 Br 0.045 6.955 19 C -0.049 4.049 20 C -0.120 4.120 21 C -0.188 4.188 22 O -0.375 6.375 23 Si 0.679 3.321 24 C -0.095 4.095 25 C -0.211 4.211 26 C -0.149 4.149 27 C -0.157 4.157 28 H 0.172 0.828 29 H 0.149 0.851 30 H 0.169 0.831 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.253 0.747 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.167 0.833 39 H 0.112 0.888 40 H 0.256 0.744 41 H -0.217 1.217 42 H -0.210 1.210 43 H 0.155 0.845 44 H 0.190 0.810 45 H 0.103 0.897 46 H 0.119 0.881 47 H 0.098 0.902 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.080 0.337 3.558 3.733 hybrid contribution -0.445 -0.398 -0.168 0.620 sum 0.635 -0.060 3.390 3.449 Atomic orbital electron populations 1.30193 1.22934 1.13904 1.13055 1.07819 0.79713 0.74577 0.77651 1.93537 1.80671 1.36242 1.87194 1.93558 1.80884 1.67720 1.56269 1.30094 1.05579 1.13647 1.17087 0.81064 1.21534 1.02412 0.98388 0.92848 1.21837 0.95123 1.02907 0.96298 1.21080 0.93421 0.81600 1.00195 0.90549 1.45914 1.62441 1.16227 1.11735 1.20275 0.78757 0.86757 0.84007 1.90780 1.47637 1.74365 1.30989 1.22898 1.05012 0.92242 0.85020 1.86247 1.76632 1.25355 1.32762 1.18726 0.93489 0.84437 0.93190 1.21323 1.10959 0.97570 0.92156 1.96754 1.83336 1.79748 1.35705 1.20966 0.93151 0.90617 1.00157 1.19646 1.02704 0.96480 0.93199 1.24848 0.93744 0.87344 1.12884 1.86451 1.34536 1.22431 1.94126 0.94074 0.76700 0.88308 0.72982 1.21070 0.96926 0.94754 0.96712 1.21442 1.04110 0.96778 0.98799 1.21728 1.02191 0.99597 0.91350 1.21486 0.90854 1.03309 1.00007 0.82784 0.85070 0.83112 0.87871 0.90412 0.92611 0.88580 0.74741 0.85836 0.85607 0.83258 0.88758 0.74445 1.21731 1.20972 0.84544 0.81028 0.89747 0.88088 0.90231 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 7.05 10.17 113.37 1.15 8.21 16 2 S 2.41 -10.42 4.88 -56.49 -0.28 -10.70 16 3 O -0.98 -3.21 17.91 -127.37 -2.28 -5.49 16 4 O -0.99 -4.74 18.10 -127.37 -2.30 -7.04 16 5 C -0.55 5.60 2.58 30.59 0.08 5.68 16 6 H 0.17 -2.71 8.14 -2.39 -0.02 -2.73 16 7 C -0.11 1.06 4.80 30.59 0.15 1.20 16 8 C -0.12 0.73 5.60 30.60 0.17 0.90 16 9 C 0.14 -0.65 2.78 45.00 0.13 -0.53 16 10 H 0.08 0.01 7.58 -2.39 -0.02 -0.01 16 11 N -0.71 3.13 4.23 -442.53 -1.87 1.26 16 12 C 0.52 1.31 7.87 87.66 0.69 2.00 16 13 O -0.56 -7.35 16.16 16.01 0.26 -7.10 16 14 C 0.03 -0.04 5.22 71.24 0.37 0.33 16 15 O -0.30 -2.20 9.01 -73.63 -0.66 -2.86 16 16 C 0.15 0.95 6.68 22.52 0.15 1.10 16 17 C -0.14 -1.19 6.24 22.40 0.14 -1.05 16 18 Br -0.04 -0.42 33.16 -20.37 -0.68 -1.09 16 19 C -0.03 -0.17 9.42 22.27 0.21 0.04 16 20 C -0.12 -0.46 5.38 -19.85 -0.11 -0.56 16 21 C -0.08 0.14 2.79 71.24 0.20 0.34 16 22 O -0.57 0.60 12.81 -148.98 -1.91 -1.31 16 23 Si 0.77 -3.34 29.85 68.60 2.05 -1.29 16 24 C -0.08 -0.20 8.66 22.26 0.19 -0.01 16 25 C -0.19 -0.26 9.04 22.36 0.20 -0.06 16 26 C -0.11 1.00 5.61 30.60 0.17 1.17 16 27 C -0.12 1.02 5.04 30.60 0.15 1.18 16 28 H 0.15 -2.36 8.14 -2.39 -0.02 -2.38 16 29 H 0.13 -1.30 8.14 -2.39 -0.02 -1.32 16 30 H 0.15 -2.21 6.87 -2.39 -0.02 -2.23 16 31 H 0.10 -1.43 6.56 -2.39 -0.02 -1.44 16 32 H 0.08 -0.59 7.52 -2.39 -0.02 -0.61 16 33 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 35 H 0.41 -4.01 6.87 -92.71 -0.64 -4.64 16 36 H 0.12 -0.89 7.65 -2.39 -0.02 -0.91 16 37 H 0.13 -0.99 7.67 -2.39 -0.02 -1.01 16 38 H 0.15 0.58 8.06 -2.92 -0.02 0.56 16 39 H 0.09 -0.53 7.96 -2.39 -0.02 -0.55 16 40 H 0.40 -4.68 8.74 -74.06 -0.65 -5.33 16 41 H -0.29 -0.68 7.05 99.48 0.70 0.02 16 42 H -0.28 -0.13 7.11 99.48 0.71 0.58 16 43 H 0.14 0.03 4.86 -2.91 -0.01 0.02 16 44 H 0.17 -1.04 6.30 -2.91 -0.02 -1.06 16 45 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 46 H 0.10 -1.13 8.14 -2.39 -0.02 -1.15 16 47 H 0.08 -0.74 6.51 -2.39 -0.02 -0.76 16 48 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 Total: 0.00 -39.29 416.41 -3.85 -43.15 By element: Atomic # 1 Polarization: -27.24 SS G_CDS: -0.23 Total: -27.47 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 4.05 Total: 19.94 kcal Atomic # 7 Polarization: 3.13 SS G_CDS: -1.87 Total: 1.26 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -6.90 Total: -23.80 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: 2.05 Total: -1.29 kcal Atomic # 16 Polarization: -10.42 SS G_CDS: -0.28 Total: -10.70 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -0.68 Total: -1.09 kcal Total: -39.29 -3.85 -43.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_6201210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.246 kcal (2) G-P(sol) polarization free energy of solvation -39.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds