Wall clock time and date at job start Tue Mar 9 2021 13:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33811 * 122.44999 * 2 1 4 4 C 1.50708 * 124.52343 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47029 * 113.28128 * 4 3 2 6 6 Si 1.86300 * 109.47166 * 233.28125 * 4 3 2 7 7 S 1.70614 * 110.95442 * 180.28442 * 3 2 1 8 8 C 1.75832 * 91.56219 * 359.66109 * 7 3 2 9 9 C 1.46578 * 125.45585 * 180.02562 * 8 7 3 10 10 O 1.21704 * 120.00026 * 180.33431 * 9 8 7 11 11 N 1.34777 * 120.00443 * 0.32809 * 9 8 7 12 12 C 1.46502 * 120.00543 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46627 * 325.00310 * 12 11 9 14 14 C 1.52994 * 109.46775 * 85.00044 * 12 11 9 15 15 C 1.52999 * 109.47243 * 60.00421 * 14 12 11 16 16 C 1.53001 * 109.47180 * 59.99894 * 15 14 12 17 17 H 1.09001 * 109.47484 * 59.99465 * 16 15 14 18 18 S 1.81400 * 109.47154 * 180.02562 * 16 15 14 19 19 C 1.81402 * 101.92065 * 304.99568 * 18 16 15 20 20 O 1.42100 * 108.57922 * 59.48408 * 18 16 15 21 21 O 1.42097 * 108.57705 * 190.51206 * 18 16 15 22 22 C 1.53006 * 109.46948 * 299.99950 * 16 15 14 23 23 C 1.52994 * 109.47383 * 205.00338 * 12 11 9 24 24 C 1.36644 * 109.08229 * 0.33321 * 8 7 3 25 25 H 1.09001 * 109.46824 * 84.85489 * 1 2 3 26 26 H 1.09003 * 109.47225 * 204.85083 * 1 2 3 27 27 H 1.09003 * 109.47275 * 324.85228 * 1 2 3 28 28 H 1.09001 * 109.46867 * 353.28211 * 4 3 2 29 29 H 0.96702 * 114.00061 * 59.99850 * 5 4 3 30 30 H 1.48497 * 109.99813 * 58.68065 * 6 4 3 31 31 H 1.48496 * 109.99745 * 180.02562 * 6 4 3 32 32 H 0.97001 * 119.99614 * 0.02562 * 11 9 8 33 33 H 1.09006 * 109.47225 * 180.02562 * 14 12 11 34 34 H 1.09004 * 109.47679 * 299.99933 * 14 12 11 35 35 H 1.08995 * 109.47086 * 299.99605 * 15 14 12 36 36 H 1.09007 * 109.47146 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.46808 * 60.00349 * 19 18 16 38 38 H 1.08998 * 109.46983 * 179.97438 * 19 18 16 39 39 H 1.08997 * 109.47187 * 300.00417 * 19 18 16 40 40 H 1.08995 * 109.47032 * 300.00114 * 22 16 15 41 41 H 1.08997 * 109.47234 * 180.02562 * 22 16 15 42 42 H 1.09003 * 109.47498 * 59.99747 * 23 12 11 43 43 H 1.08995 * 109.47206 * 179.97438 * 23 12 11 44 44 H 1.07998 * 123.34869 * 179.71258 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5162 0.0006 5 8 1.9397 3.1625 1.2382 6 14 2.3585 3.4988 -1.4074 7 16 3.8969 0.7892 -0.0079 8 6 3.5936 -0.9428 -0.0009 9 6 4.6230 -1.9863 -0.0026 10 8 4.3001 -3.1597 -0.0034 11 7 5.9272 -1.6464 -0.0034 12 6 6.9561 -2.6893 -0.0057 13 1 6.6125 -3.5399 0.5830 14 6 7.2234 -3.1388 -1.4435 15 6 7.7056 -1.9448 -2.2698 16 6 8.9951 -1.3906 -1.6607 17 1 9.7606 -2.1666 -1.6624 18 16 9.5665 0.0255 -2.6400 19 6 9.6688 -0.6872 -4.3050 20 8 8.5507 1.0192 -2.6345 21 8 10.8774 0.3709 -2.2142 22 6 8.7278 -0.9410 -0.2229 23 6 8.2455 -2.1350 0.6034 24 6 2.2446 -1.1601 -0.0004 25 1 -0.3633 0.0922 -1.0236 26 1 -0.3634 -0.9325 0.4319 27 1 -0.3634 0.8403 0.5916 28 1 0.5540 2.4513 -0.1193 29 1 2.8866 3.2548 1.4113 30 1 2.0764 2.8203 -2.6978 31 1 1.7857 4.8688 -1.4174 32 1 6.1847 -0.7111 -0.0025 33 1 7.9886 -3.9151 -1.4452 34 1 6.3048 -3.5337 -1.8775 35 1 6.9402 -1.1689 -2.2681 36 1 7.8965 -2.2652 -3.2941 37 1 8.6853 -1.0472 -4.6071 38 1 10.0074 0.0753 -5.0064 39 1 10.3745 -1.5179 -4.3020 40 1 7.9624 -0.1651 -0.2212 41 1 9.6463 -0.5457 0.2109 42 1 8.0551 -1.8147 1.6278 43 1 9.0108 -2.9111 0.6021 44 1 1.8019 -2.1452 -0.0011 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:15 Heat of formation + Delta-G solvation = -113.217740 kcal Electronic energy + Delta-G solvation = -28753.150138 eV Core-core repulsion = 24697.686948 eV Total energy + Delta-G solvation = -4055.463190 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.094 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.40341 -39.99664 -39.04241 -37.97533 -37.57141 -37.01540 -35.01948 -32.70035 -32.12911 -31.08270 -30.05931 -29.87961 -26.81156 -24.64010 -23.86935 -23.77806 -22.14741 -20.55514 -20.13207 -19.72212 -19.53059 -17.99402 -17.78854 -17.64434 -17.03825 -16.94907 -16.76189 -16.44588 -16.04154 -15.83776 -15.66272 -15.26595 -15.02973 -14.80110 -14.65170 -14.37012 -14.24775 -13.97868 -13.90503 -13.77505 -13.58233 -13.39648 -13.21897 -13.16794 -13.07877 -13.03448 -13.00272 -12.57064 -12.45442 -12.28273 -12.21320 -11.95525 -11.94338 -11.74729 -11.45884 -11.26656 -10.85784 -10.80076 -10.23925 -9.72102 -9.45461 -5.18041 -0.91736 -0.70655 0.29264 0.68098 1.03899 1.24047 1.56136 1.84332 1.84879 2.00844 2.05248 2.72710 3.05918 3.33692 3.43106 3.52280 3.53810 3.65811 3.83050 3.93935 4.04501 4.06666 4.10142 4.15242 4.19587 4.25913 4.37862 4.41406 4.42650 4.46712 4.54041 4.68516 4.72891 4.76556 4.89007 4.92844 4.97907 5.02240 5.08182 5.10837 5.14304 5.22622 5.23778 5.33347 5.44559 6.31985 6.55991 7.00789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.111 4.111 3 C -0.241 4.241 4 C -0.034 4.034 5 O -0.545 6.545 6 Si 0.747 3.253 7 S 0.262 5.738 8 C -0.284 4.284 9 C 0.592 3.408 10 O -0.566 6.566 11 N -0.711 5.711 12 C 0.138 3.862 13 H 0.081 0.919 14 C -0.122 4.122 15 C -0.117 4.117 16 C -0.554 4.554 17 H 0.173 0.827 18 S 2.411 3.589 19 C -0.649 4.649 20 O -0.975 6.975 21 O -0.986 6.986 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.057 4.057 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.128 0.872 29 H 0.393 0.607 30 H -0.281 1.281 31 H -0.273 1.273 32 H 0.406 0.594 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.151 0.849 38 H 0.131 0.869 39 H 0.154 0.846 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -1.252 -1.774 4.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.124 4.124 3 C -0.360 4.360 4 C -0.146 4.146 5 O -0.353 6.353 6 Si 0.649 3.351 7 S 0.531 5.469 8 C -0.405 4.405 9 C 0.379 3.621 10 O -0.447 6.447 11 N -0.363 5.363 12 C 0.034 3.966 13 H 0.100 0.900 14 C -0.161 4.161 15 C -0.155 4.155 16 C -0.665 4.665 17 H 0.191 0.809 18 S 2.600 3.400 19 C -0.801 4.801 20 O -0.972 6.972 21 O -0.984 6.984 22 C -0.159 4.159 23 C -0.151 4.151 24 C -0.091 4.091 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.145 0.855 29 H 0.243 0.757 30 H -0.207 1.207 31 H -0.198 1.198 32 H 0.244 0.756 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.126 0.874 37 H 0.169 0.831 38 H 0.150 0.850 39 H 0.172 0.828 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.123 0.877 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.260 0.213 -2.203 4.800 hybrid contribution -2.085 -1.628 -0.073 2.646 sum 2.175 -1.415 -2.275 3.451 Atomic orbital electron populations 1.20651 0.88463 1.03835 1.03132 1.18825 0.98875 0.90852 1.03858 1.24691 0.99907 1.00920 1.10523 1.24702 1.03934 0.89510 0.96494 1.86541 1.31465 1.79348 1.37951 0.94219 0.89128 0.77155 0.74596 1.82491 1.01314 0.96106 1.66939 1.24627 0.97918 0.98341 1.19569 1.17078 0.82478 0.86950 0.75583 1.90826 1.82308 1.19673 1.51877 1.46015 1.04627 1.11162 1.74524 1.21173 0.87326 0.90411 0.97659 0.90043 1.21842 1.02152 0.98042 0.94071 1.21591 0.93978 0.99213 1.00748 1.30112 1.09141 1.18766 1.08490 0.80930 1.07894 0.74048 0.78265 0.79828 1.30204 1.13808 1.15155 1.20971 1.93543 1.60092 1.56634 1.86920 1.93561 1.39912 1.83029 1.81854 1.21497 1.03538 0.99306 0.91521 1.21756 0.95782 0.98382 0.99176 1.20742 0.91340 1.00119 0.96870 0.90260 0.90481 0.90742 0.85506 0.75667 1.20672 1.19813 0.75646 0.88189 0.92385 0.90716 0.87444 0.83072 0.85012 0.82793 0.90531 0.88850 0.89814 0.87665 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.07 9.48 71.24 0.68 0.74 16 2 C -0.11 -0.26 5.78 -21.05 -0.12 -0.38 16 3 C -0.24 -0.07 4.83 24.68 0.12 0.05 16 4 C -0.03 0.03 2.77 71.24 0.20 0.23 16 5 O -0.55 0.36 12.88 -148.98 -1.92 -1.56 16 6 Si 0.75 -1.15 32.12 68.60 2.20 1.05 16 7 S 0.26 -0.66 20.81 -56.49 -1.18 -1.83 16 8 C -0.28 -0.96 6.45 24.07 0.16 -0.81 16 9 C 0.59 3.08 7.75 86.42 0.67 3.75 16 10 O -0.57 -7.13 16.50 -4.36 -0.07 -7.21 16 11 N -0.71 1.03 4.23 -446.60 -1.89 -0.85 16 12 C 0.14 -0.54 2.78 44.99 0.13 -0.41 16 13 H 0.08 -0.01 7.58 -2.39 -0.02 -0.03 16 14 C -0.12 0.75 5.60 30.59 0.17 0.92 16 15 C -0.12 1.08 4.75 30.59 0.15 1.22 16 16 C -0.55 5.50 2.62 30.60 0.08 5.58 16 17 H 0.17 -2.73 8.14 -2.39 -0.02 -2.75 16 18 S 2.41 -10.63 4.90 -56.49 -0.28 -10.90 16 19 C -0.65 7.26 10.01 113.37 1.14 8.39 16 20 O -0.97 -2.73 18.06 -127.37 -2.30 -5.03 16 21 O -0.99 -4.48 18.10 -127.37 -2.30 -6.78 16 22 C -0.12 0.96 5.03 30.60 0.15 1.12 16 23 C -0.11 0.96 5.61 30.59 0.17 1.13 16 24 C -0.06 -0.25 9.78 21.72 0.21 -0.04 16 25 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H 0.08 -0.12 8.10 -2.39 -0.02 -0.14 16 27 H 0.07 -0.09 7.00 -2.39 -0.02 -0.10 16 28 H 0.13 -0.12 6.25 -2.39 -0.01 -0.14 16 29 H 0.39 -3.32 8.70 -74.06 -0.64 -3.96 16 30 H -0.28 -1.15 7.11 99.48 0.71 -0.44 16 31 H -0.27 -1.09 7.11 99.48 0.71 -0.38 16 32 H 0.41 -2.02 5.98 -92.71 -0.55 -2.57 16 33 H 0.10 -0.99 8.14 -2.38 -0.02 -1.01 16 34 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.07 -0.52 7.60 -2.39 -0.02 -0.54 16 36 H 0.11 -1.55 6.39 -2.38 -0.02 -1.56 16 37 H 0.15 -2.26 6.78 -2.39 -0.02 -2.28 16 38 H 0.13 -1.37 8.14 -2.39 -0.02 -1.39 16 39 H 0.15 -2.41 8.14 -2.39 -0.02 -2.43 16 40 H 0.08 -0.60 6.51 -2.39 -0.02 -0.61 16 41 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 42 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.10 -1.20 8.14 -2.39 -0.02 -1.22 16 44 H 0.15 0.71 8.06 -2.91 -0.02 0.69 16 Total: 0.00 -30.34 377.27 -3.96 -34.30 By element: Atomic # 1 Polarization: -22.56 SS G_CDS: -0.12 Total: -22.68 kcal Atomic # 6 Polarization: 17.60 SS G_CDS: 3.89 Total: 21.49 kcal Atomic # 7 Polarization: 1.03 SS G_CDS: -1.89 Total: -0.85 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -6.60 Total: -20.57 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: 2.20 Total: 1.05 kcal Atomic # 16 Polarization: -11.28 SS G_CDS: -1.45 Total: -12.74 kcal Total: -30.34 -3.96 -34.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.915 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds