Wall clock time and date at job start Tue Mar 9 2021 13:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42099 * 108.58173 * 2 1 4 4 O 1.42106 * 108.57931 * 228.97592 * 2 1 3 5 5 C 1.81399 * 101.92301 * 114.48856 * 2 1 3 6 6 H 1.09000 * 109.47234 * 65.00086 * 5 2 1 7 7 C 1.53006 * 109.47004 * 184.99994 * 5 2 1 8 8 C 1.52999 * 109.46626 * 179.97438 * 7 5 2 9 9 C 1.52997 * 109.47592 * 300.00035 * 8 7 5 10 10 H 1.09001 * 109.47375 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47012 * 300.00038 * 9 8 7 12 12 C 1.34778 * 120.00288 * 274.99862 * 11 9 8 13 13 O 1.21285 * 119.99803 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00048 * 180.02562 * 12 11 9 15 15 N 1.46493 * 109.47097 * 179.97438 * 14 12 11 16 16 C 1.36833 * 125.06273 * 265.02817 * 15 14 12 17 17 C 1.34244 * 109.93882 * 179.97438 * 16 15 14 18 18 C 1.50698 * 126.50195 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47362 * 254.97495 * 18 17 16 20 20 Si 1.86302 * 109.46987 * 14.97549 * 18 17 16 21 21 C 1.46487 * 106.99643 * 359.97438 * 17 16 15 22 22 C 1.39593 * 134.03793 * 180.02562 * 21 17 16 23 23 C 1.36659 * 119.76527 * 179.97438 * 22 21 17 24 24 C 1.38785 * 120.53342 * 0.02562 * 23 22 21 25 25 C 1.37795 * 120.66486 * 359.97438 * 24 23 22 26 26 C 1.37692 * 125.06472 * 84.71886 * 15 14 12 27 27 C 1.52996 * 109.47165 * 60.00300 * 9 8 7 28 28 C 1.52997 * 109.47139 * 304.99984 * 5 2 1 29 29 H 1.08996 * 109.47092 * 305.51051 * 1 2 3 30 30 H 1.09004 * 109.46897 * 65.51540 * 1 2 3 31 31 H 1.08993 * 109.46941 * 185.51045 * 1 2 3 32 32 H 1.08993 * 109.46955 * 300.00150 * 7 5 2 33 33 H 1.09000 * 109.47050 * 59.99979 * 7 5 2 34 34 H 1.09000 * 109.47160 * 60.00369 * 8 7 5 35 35 H 1.09002 * 109.46719 * 180.02562 * 8 7 5 36 36 H 0.97007 * 119.99777 * 95.00028 * 11 9 8 37 37 H 1.08994 * 109.46915 * 300.00369 * 14 12 11 38 38 H 1.08999 * 109.46676 * 60.00061 * 14 12 11 39 39 H 1.07995 * 125.03567 * 359.96324 * 16 15 14 40 40 H 1.09001 * 109.46983 * 134.97177 * 18 17 16 41 41 H 0.96694 * 114.00003 * 180.02562 * 19 18 17 42 42 H 1.48497 * 110.00099 * 299.99871 * 20 18 17 43 43 H 1.48507 * 110.00091 * 61.31850 * 20 18 17 44 44 H 1.08000 * 120.11893 * 359.94951 * 22 21 17 45 45 H 1.08010 * 119.73526 * 180.02562 * 23 22 21 46 46 H 1.08001 * 119.67331 * 179.97438 * 24 23 22 47 47 H 1.07987 * 120.11477 * 179.97438 * 25 24 23 48 48 H 1.08992 * 109.47534 * 180.02562 * 27 9 8 49 49 H 1.08996 * 109.47134 * 59.99508 * 27 9 8 50 50 H 1.09000 * 109.47140 * 300.00159 * 28 5 2 51 51 H 1.09001 * 109.47230 * 59.99303 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 1 1.8389 -1.7679 1.6343 7 6 3.7002 -0.7050 1.8512 8 6 4.0161 -1.3250 3.2138 9 6 3.3120 -0.5269 4.3130 10 1 3.5375 -0.9683 5.2838 11 7 3.7824 0.8603 4.2868 12 6 4.9104 1.2019 4.9405 13 8 5.5363 0.3607 5.5502 14 6 5.3939 2.6290 4.9140 15 7 6.6291 2.7406 5.6936 16 6 6.6981 3.1150 7.0079 17 6 7.9765 3.1149 7.4175 18 6 8.4766 3.4669 8.7948 19 8 9.0782 4.7627 8.7664 20 14 7.0488 3.4712 9.9915 21 6 8.7931 2.7064 6.2720 22 6 10.1623 2.5209 6.0733 23 6 10.6225 2.1225 4.8497 24 6 9.7394 1.9014 3.8021 25 6 8.3840 2.0785 3.9762 26 6 7.8932 2.4786 5.2146 27 6 1.8007 -0.5576 4.0770 28 6 1.4846 0.0619 2.7146 29 1 -0.3633 0.5969 0.8365 30 1 -0.3633 0.4259 -0.9353 31 1 -0.3633 -1.0229 0.0987 32 1 4.2018 -1.2732 1.0680 33 1 4.0500 0.3271 1.8321 34 1 3.6662 -2.3571 3.2333 35 1 5.0928 -1.3028 3.3822 36 1 3.2819 1.5330 3.7988 37 1 5.5856 2.9285 3.8837 38 1 4.6324 3.2786 5.3455 39 1 5.8497 3.3727 7.6245 40 1 9.2147 2.7305 9.1125 41 1 9.4235 5.0548 9.6210 42 1 6.0353 4.4711 9.5695 43 1 6.4344 2.1206 10.0541 44 1 10.8556 2.6918 6.8836 45 1 11.6819 1.9787 4.6967 46 1 10.1183 1.5872 2.8408 47 1 7.7050 1.9043 3.1548 48 1 1.2990 0.0113 4.8597 49 1 1.4508 -1.5896 4.0964 50 1 1.8344 1.0941 2.6955 51 1 0.4078 0.0402 2.5464 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14783808_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:34 Heat of formation + Delta-G solvation = -68.996112 kcal Electronic energy + Delta-G solvation = -35474.291324 eV Core-core repulsion = 30854.177670 eV Total energy + Delta-G solvation = -4620.113654 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.149 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.67338 -41.30127 -39.33386 -38.12048 -38.04545 -37.59312 -37.08596 -35.09128 -34.28133 -32.23795 -31.91566 -31.06577 -30.38679 -30.11000 -28.84611 -25.84105 -24.28137 -23.87885 -23.81647 -22.94462 -21.99070 -20.64965 -20.50607 -19.77135 -18.84451 -18.30632 -18.24565 -18.01263 -17.82088 -17.17170 -17.00495 -16.76196 -16.54962 -16.41784 -16.06305 -15.68297 -15.54760 -15.19402 -14.98070 -14.94475 -14.79744 -14.71520 -14.55200 -14.20964 -14.06525 -13.94388 -13.83755 -13.66752 -13.54136 -13.37362 -13.27580 -13.14821 -13.08682 -12.79206 -12.69818 -12.64206 -12.49571 -12.31606 -12.07383 -11.94519 -11.83960 -11.82010 -11.55226 -11.26152 -10.92624 -10.66207 -10.24835 -10.18828 -9.28208 -8.75666 -4.98153 -0.98450 0.02292 0.54998 1.28700 1.31761 1.33365 1.48203 1.68783 1.80456 1.96919 2.11242 2.67633 2.86440 2.99849 3.34548 3.43332 3.46509 3.46969 3.57359 3.63956 3.74369 3.77324 3.88235 3.94482 3.96908 3.99195 4.07340 4.12194 4.15824 4.20015 4.22477 4.32712 4.33884 4.38333 4.45711 4.49315 4.59345 4.66417 4.69031 4.81009 4.82015 4.87692 4.94199 4.97522 5.04758 5.06146 5.10020 5.15588 5.38313 5.41940 5.56340 5.63258 5.63899 6.02660 6.12731 6.34312 6.99339 7.01414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.407 3.593 3 O -0.979 6.979 4 O -0.995 6.995 5 C -0.553 4.553 6 H 0.169 0.831 7 C -0.110 4.110 8 C -0.118 4.118 9 C 0.141 3.859 10 H 0.071 0.929 11 N -0.707 5.707 12 C 0.493 3.507 13 O -0.568 6.568 14 C 0.082 3.918 15 N -0.467 5.467 16 C 0.053 3.947 17 C -0.179 4.179 18 C -0.048 4.048 19 O -0.565 6.565 20 Si 0.788 3.212 21 C -0.119 4.119 22 C -0.081 4.081 23 C -0.151 4.151 24 C -0.102 4.102 25 C -0.138 4.138 26 C 0.090 3.910 27 C -0.112 4.112 28 C -0.120 4.120 29 H 0.160 0.840 30 H 0.131 0.869 31 H 0.155 0.845 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.416 0.584 37 H 0.142 0.858 38 H 0.156 0.844 39 H 0.176 0.824 40 H 0.074 0.926 41 H 0.399 0.601 42 H -0.280 1.280 43 H -0.300 1.300 44 H 0.130 0.870 45 H 0.145 0.855 46 H 0.148 0.852 47 H 0.129 0.871 48 H 0.091 0.909 49 H 0.100 0.900 50 H 0.085 0.915 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 0.520 3.425 9.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.597 3.403 3 O -0.977 6.977 4 O -0.992 6.992 5 C -0.664 4.664 6 H 0.187 0.813 7 C -0.149 4.149 8 C -0.158 4.158 9 C 0.037 3.963 10 H 0.089 0.911 11 N -0.362 5.362 12 C 0.278 3.722 13 O -0.446 6.446 14 C -0.043 4.043 15 N -0.149 5.149 16 C -0.072 4.072 17 C -0.186 4.186 18 C -0.157 4.157 19 O -0.375 6.375 20 Si 0.692 3.308 21 C -0.123 4.123 22 C -0.099 4.099 23 C -0.169 4.169 24 C -0.121 4.121 25 C -0.158 4.158 26 C -0.015 4.015 27 C -0.150 4.150 28 C -0.158 4.158 29 H 0.178 0.822 30 H 0.150 0.850 31 H 0.173 0.827 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.255 0.745 37 H 0.159 0.841 38 H 0.173 0.827 39 H 0.193 0.807 40 H 0.092 0.908 41 H 0.250 0.750 42 H -0.207 1.207 43 H -0.228 1.228 44 H 0.148 0.852 45 H 0.162 0.838 46 H 0.166 0.834 47 H 0.147 0.853 48 H 0.109 0.891 49 H 0.119 0.881 50 H 0.104 0.896 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.802 0.065 2.456 9.138 hybrid contribution -0.137 -0.473 -0.405 0.638 sum -8.939 -0.408 2.051 9.180 Atomic orbital electron populations 1.30153 1.21669 1.14135 1.13481 1.07961 0.80239 0.74528 0.77569 1.93536 1.80923 1.36083 1.87115 1.93555 1.81256 1.67890 1.56513 1.30099 1.04086 1.14356 1.17875 0.81334 1.21322 0.91870 1.02760 0.98910 1.21786 1.00019 1.00490 0.93478 1.21046 0.95493 0.81053 0.98729 0.91076 1.46028 1.25490 1.11899 1.52746 1.21277 0.81225 0.91097 0.78633 1.90790 1.56880 1.52680 1.44269 1.22006 0.86664 0.94995 1.00636 1.43378 1.04686 1.57477 1.09372 1.21729 0.98247 1.02413 0.84820 1.20047 0.92164 1.11064 0.95372 1.24256 1.06858 0.87378 0.97204 1.86483 1.79961 1.32154 1.38874 0.94244 0.75251 0.76929 0.84354 1.19356 0.94028 1.05538 0.93380 1.20507 0.92959 0.98216 0.98252 1.20977 1.00988 1.02215 0.92766 1.21183 0.91885 0.98934 1.00121 1.20243 0.96591 1.04826 0.94181 1.18468 0.84225 1.02931 0.95878 1.21745 0.91922 1.04264 0.97117 1.21708 1.02435 0.99018 0.92649 0.82178 0.85023 0.82697 0.90983 0.90733 0.89107 0.93562 0.74516 0.84070 0.82681 0.80689 0.90781 0.75044 1.20693 1.22797 0.85239 0.83754 0.83386 0.85300 0.89074 0.88119 0.89641 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 8.44 10.01 113.37 1.14 9.58 16 2 S 2.41 -10.46 4.90 -56.49 -0.28 -10.74 16 3 O -0.98 -3.08 18.06 -127.37 -2.30 -5.38 16 4 O -0.99 -6.27 18.10 -127.37 -2.31 -8.57 16 5 C -0.55 5.56 2.62 30.60 0.08 5.64 16 6 H 0.17 -2.56 8.14 -2.39 -0.02 -2.58 16 7 C -0.11 0.43 5.05 30.60 0.15 0.59 16 8 C -0.12 0.30 5.60 30.59 0.17 0.47 16 9 C 0.14 -0.63 2.78 44.99 0.13 -0.50 16 10 H 0.07 0.06 7.58 -2.39 -0.02 0.04 16 11 N -0.71 3.33 4.23 -442.53 -1.87 1.46 16 12 C 0.49 1.28 7.86 87.66 0.69 1.97 16 13 O -0.57 -7.74 16.08 -3.05 -0.05 -7.79 16 14 C 0.08 -0.10 6.48 85.64 0.56 0.46 16 15 N -0.47 -3.76 2.27 -520.00 -1.18 -4.94 16 16 C 0.05 0.49 9.89 83.00 0.82 1.32 16 17 C -0.18 -2.07 5.61 -18.63 -0.10 -2.17 16 18 C -0.05 -0.23 3.05 71.24 0.22 -0.02 16 19 O -0.57 -2.43 12.86 -148.98 -1.92 -4.34 16 20 Si 0.79 0.28 30.79 68.60 2.11 2.40 16 21 C -0.12 -1.65 6.35 -20.20 -0.13 -1.77 16 22 C -0.08 -0.89 10.05 22.23 0.22 -0.66 16 23 C -0.15 -1.17 9.97 22.03 0.22 -0.95 16 24 C -0.10 -0.73 10.01 22.30 0.22 -0.51 16 25 C -0.14 -1.25 10.00 22.37 0.22 -1.02 16 26 C 0.09 1.09 6.79 39.03 0.27 1.35 16 27 C -0.11 1.35 5.61 30.58 0.17 1.52 16 28 C -0.12 1.72 4.74 30.58 0.14 1.86 16 29 H 0.16 -3.01 6.77 -2.39 -0.02 -3.03 16 30 H 0.13 -1.56 8.14 -2.39 -0.02 -1.58 16 31 H 0.15 -2.70 8.14 -2.39 -0.02 -2.72 16 32 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.07 -0.23 7.60 -2.39 -0.02 -0.25 16 34 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.42 -4.48 6.87 -92.70 -0.64 -5.12 16 37 H 0.14 -0.80 8.14 -2.39 -0.02 -0.82 16 38 H 0.16 -1.33 8.12 -2.39 -0.02 -1.35 16 39 H 0.18 0.83 6.30 -2.91 -0.02 0.81 16 40 H 0.07 0.23 7.96 -2.39 -0.02 0.21 16 41 H 0.40 -2.80 8.74 -74.06 -0.65 -3.45 16 42 H -0.28 -1.24 7.04 99.48 0.70 -0.54 16 43 H -0.30 -2.27 7.11 99.48 0.71 -1.56 16 44 H 0.13 1.03 8.06 -2.91 -0.02 1.00 16 45 H 0.14 0.36 8.06 -2.91 -0.02 0.34 16 46 H 0.15 0.24 8.06 -2.91 -0.02 0.22 16 47 H 0.13 0.63 8.06 -2.92 -0.02 0.60 16 48 H 0.09 -1.22 8.14 -2.39 -0.02 -1.24 16 49 H 0.10 -1.41 8.14 -2.39 -0.02 -1.43 16 50 H 0.09 -1.25 6.50 -2.39 -0.02 -1.27 16 51 H 0.12 -2.54 6.39 -2.39 -0.02 -2.55 16 Total: 0.00 -44.58 422.26 -2.88 -47.46 By element: Atomic # 1 Polarization: -26.43 SS G_CDS: -0.29 Total: -26.71 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 5.19 Total: 17.15 kcal Atomic # 7 Polarization: -0.43 SS G_CDS: -3.05 Total: -3.48 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -6.57 Total: -26.08 kcal Atomic # 14 Polarization: 0.28 SS G_CDS: 2.11 Total: 2.40 kcal Atomic # 16 Polarization: -10.46 SS G_CDS: -0.28 Total: -10.74 kcal Total: -44.58 -2.88 -47.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14783808_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.532 kcal (2) G-P(sol) polarization free energy of solvation -44.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds