Wall clock time and date at job start Tue Mar 9 2021 13:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 120.00124 * 2 1 4 4 O 1.21286 * 119.99989 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.00159 * 359.97438 * 3 2 1 6 6 C 1.50699 * 109.47257 * 180.02562 * 5 3 2 7 7 C 1.38227 * 120.00172 * 269.72551 * 6 5 3 8 8 C 1.38237 * 120.00272 * 179.78956 * 7 6 5 9 9 C 1.38240 * 119.99624 * 0.46143 * 8 7 6 10 10 C 1.50699 * 119.99838 * 179.78958 * 9 8 7 11 11 O 1.42896 * 109.47222 * 244.98358 * 10 9 8 12 12 Si 1.86303 * 109.47272 * 4.98463 * 10 9 8 13 13 C 1.38230 * 119.99811 * 359.77548 * 9 8 7 14 14 C 1.38227 * 120.00516 * 0.02562 * 13 9 8 15 15 C 1.46506 * 119.99968 * 179.97438 * 2 1 3 16 16 H 1.08994 * 112.84680 * 168.80361 * 15 2 1 17 17 C 1.53779 * 113.61447 * 300.00282 * 15 2 1 18 18 C 1.53784 * 87.07972 * 89.11436 * 17 15 2 19 19 H 1.09003 * 113.61524 * 270.79773 * 18 17 15 20 20 C 1.50704 * 113.61285 * 139.98470 * 18 17 15 21 21 C 1.38234 * 120.00277 * 120.00111 * 20 18 17 22 22 C 1.38230 * 119.99885 * 180.02562 * 21 20 18 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38235 * 119.99518 * 300.01793 * 20 18 17 26 26 C 1.53776 * 87.08431 * 25.43090 * 18 17 15 27 27 H 1.09001 * 109.47415 * 270.00793 * 1 2 3 28 28 H 1.09003 * 109.46922 * 30.00111 * 1 2 3 29 29 H 1.08997 * 109.47506 * 150.00288 * 1 2 3 30 30 H 1.09008 * 109.47101 * 300.00443 * 5 3 2 31 31 H 1.08998 * 109.47227 * 60.00288 * 5 3 2 32 32 H 1.08002 * 119.99844 * 0.02562 * 7 6 5 33 33 H 1.07997 * 120.00278 * 180.25907 * 8 7 6 34 34 H 1.09007 * 109.47052 * 124.98051 * 10 9 8 35 35 H 0.96695 * 114.00450 * 60.00133 * 11 10 9 36 36 H 1.48498 * 110.00131 * 179.97438 * 12 10 9 37 37 H 1.48510 * 109.99638 * 301.31704 * 12 10 9 38 38 H 1.08007 * 119.99521 * 180.02562 * 13 9 8 39 39 H 1.07997 * 120.00261 * 179.97438 * 14 13 9 40 40 H 1.09000 * 113.61454 * 334.57069 * 17 15 2 41 41 H 1.09000 * 113.68715 * 203.67120 * 17 15 2 42 42 H 1.07992 * 119.99701 * 359.97438 * 21 20 18 43 43 H 1.08000 * 120.00356 * 179.97438 * 22 21 20 44 44 H 1.08000 * 120.00616 * 179.70664 * 23 22 21 45 45 H 1.08001 * 120.00279 * 180.02562 * 24 23 22 46 46 H 1.07997 * 120.00423 * 359.97438 * 25 20 18 47 47 H 1.09001 * 113.61426 * 89.10953 * 26 18 17 48 48 H 1.08991 * 113.61590 * 220.01943 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4722 -0.0006 6 6 2.3648 3.6176 -0.0011 7 6 2.8096 4.1472 1.1957 8 6 3.7112 5.1951 1.1953 9 6 4.1608 5.7195 -0.0022 10 6 5.1401 6.8650 -0.0027 11 8 4.5219 8.0200 -0.5734 12 14 5.6591 7.2391 1.7471 13 6 3.7122 5.1931 -1.1990 14 6 2.8137 4.1427 -1.1985 15 6 2.1975 -1.2688 0.0006 16 1 3.2624 -1.1427 -0.1945 17 6 1.8953 -2.1540 1.2212 18 6 0.7440 -2.7577 0.3996 19 1 -0.1987 -2.2217 0.5095 20 6 0.5940 -4.2471 0.5743 21 6 -0.5866 -4.7697 1.0680 22 6 -0.7239 -6.1358 1.2287 23 6 0.3192 -6.9793 0.8951 24 6 1.4995 -6.4567 0.4004 25 6 1.6373 -5.0905 0.2411 26 6 1.5373 -2.3615 -0.8568 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 0.7590 2.5298 -0.8908 31 1 0.7585 2.5302 0.8891 32 1 2.4555 3.7399 2.1312 33 1 4.0619 5.6061 2.1304 34 1 6.0164 6.5935 -0.5914 35 1 3.7337 8.3188 -0.0997 36 1 6.6255 8.3665 1.7601 37 1 4.4693 7.5797 2.5679 38 1 4.0637 5.6027 -2.1345 39 1 2.4629 3.7317 -2.1336 40 1 1.5615 -1.5940 2.0947 41 1 2.6872 -2.8665 1.4522 42 1 -1.4014 -4.1107 1.3289 43 1 -1.6462 -6.5442 1.6148 44 1 0.2137 -8.0462 1.0251 45 1 2.3144 -7.1157 0.1394 46 1 2.5597 -4.6822 -0.1448 47 1 2.2321 -3.1303 -1.1949 48 1 0.9145 -1.9691 -1.6606 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14797354_12335836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:12 Heat of formation + Delta-G solvation = 30.061442 kcal Electronic energy + Delta-G solvation = -28017.484736 eV Core-core repulsion = 24198.153687 eV Total energy + Delta-G solvation = -3819.331050 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.167 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.89846 -40.83489 -40.03295 -38.81362 -37.74325 -35.43601 -33.99054 -31.97984 -31.93051 -31.66942 -29.71494 -28.33989 -26.73064 -26.21335 -25.23023 -23.82896 -23.59202 -22.68564 -21.87535 -20.85164 -19.54851 -18.55829 -18.45994 -17.64690 -17.35690 -17.05506 -16.73705 -16.41461 -16.22460 -16.05887 -15.95956 -15.74234 -15.12345 -15.00694 -14.78872 -14.53292 -14.32428 -14.21883 -14.06914 -13.99454 -13.88334 -13.48597 -13.25948 -13.19751 -13.00356 -12.89854 -12.81738 -12.65148 -12.28463 -12.10134 -11.98653 -11.68633 -11.60843 -11.59398 -11.16349 -10.86558 -10.61015 -9.87943 -9.80485 -9.68140 -9.63229 -9.49459 -4.93542 0.23092 0.44932 0.45142 0.51858 1.28782 1.55957 1.59562 1.90527 1.93811 2.72996 2.85188 3.40209 3.44924 3.60228 3.68774 3.71934 3.77165 3.83605 3.91124 3.98335 4.04863 4.05264 4.16715 4.22593 4.26128 4.32436 4.33651 4.45575 4.54217 4.57567 4.58664 4.63328 4.67437 4.70455 4.73358 4.75550 4.85947 4.92380 4.96715 5.01158 5.02260 5.08256 5.15801 5.19692 5.22698 5.37219 5.52944 5.58551 5.59833 5.62175 5.66345 5.78438 6.00955 6.14547 6.37633 6.46736 7.16680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.596 5.596 3 C 0.513 3.487 4 O -0.577 6.577 5 C -0.095 4.095 6 C -0.071 4.071 7 C -0.110 4.110 8 C -0.124 4.124 9 C -0.125 4.125 10 C -0.084 4.084 11 O -0.548 6.548 12 Si 0.763 3.237 13 C -0.106 4.106 14 C -0.116 4.116 15 C 0.113 3.887 16 H 0.083 0.917 17 C -0.134 4.134 18 C -0.069 4.069 19 H 0.120 0.880 20 C -0.079 4.079 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.139 4.139 24 C -0.131 4.131 25 C -0.129 4.129 26 C -0.134 4.134 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.119 0.881 35 H 0.386 0.614 36 H -0.301 1.301 37 H -0.277 1.277 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.097 0.903 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.295 -3.391 1.405 7.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.328 5.328 3 C 0.303 3.697 4 O -0.456 6.456 5 C -0.134 4.134 6 C -0.072 4.072 7 C -0.128 4.128 8 C -0.142 4.142 9 C -0.125 4.125 10 C -0.193 4.193 11 O -0.356 6.356 12 Si 0.668 3.332 13 C -0.125 4.125 14 C -0.134 4.134 15 C 0.009 3.991 16 H 0.101 0.899 17 C -0.173 4.173 18 C -0.087 4.087 19 H 0.138 0.862 20 C -0.079 4.079 21 C -0.144 4.144 22 C -0.148 4.148 23 C -0.157 4.157 24 C -0.149 4.149 25 C -0.147 4.147 26 C -0.172 4.172 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.136 0.864 35 H 0.235 0.765 36 H -0.229 1.229 37 H -0.203 1.203 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.149 0.851 45 H 0.149 0.851 46 H 0.147 0.853 47 H 0.115 0.885 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.176 -2.869 1.613 6.133 hybrid contribution -0.640 0.411 -0.502 0.911 sum -5.815 -2.457 1.112 6.410 Atomic orbital electron populations 1.22353 0.77318 1.05302 1.03685 1.47623 1.08095 1.04408 1.72693 1.21047 0.87644 0.86005 0.75033 1.90730 1.16053 1.87841 1.50980 1.20788 0.97178 0.87743 1.07708 1.19592 0.98043 0.96122 0.93412 1.21206 0.97200 0.96101 0.98318 1.21191 0.97903 0.97637 0.97436 1.20321 0.99623 0.98621 0.93927 1.25218 0.97278 0.84388 1.12381 1.86562 1.47006 1.45402 1.56649 0.93923 0.79832 0.85598 0.73857 1.21099 0.97196 0.96168 0.97993 1.21228 0.97495 0.96394 0.98240 1.21868 0.96656 0.83073 0.97522 0.89884 1.23389 0.98433 0.98285 0.97153 1.21832 0.99356 0.90975 0.96523 0.86217 1.19900 0.93951 0.95432 0.98601 1.21326 0.97793 0.95596 0.99716 1.21444 0.99519 0.93959 0.99885 1.21439 0.93907 1.00706 0.99612 1.21416 0.98271 0.95725 0.99528 1.21224 0.99246 0.93523 1.00665 1.23441 0.99565 0.97399 0.96783 0.90795 0.88696 0.89181 0.85377 0.85186 0.84257 0.84323 0.86363 0.76505 1.22939 1.20345 0.85810 0.85074 0.90994 0.89324 0.84557 0.84801 0.85120 0.85121 0.85331 0.88473 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.55 8.64 127.77 1.10 0.56 16 2 N -0.60 1.37 3.08 -819.65 -2.53 -1.16 16 3 C 0.51 1.22 7.67 87.66 0.67 1.89 16 4 O -0.58 -7.13 15.52 -3.05 -0.05 -7.18 16 5 C -0.10 0.39 4.38 29.10 0.13 0.52 16 6 C -0.07 -0.12 4.37 -19.87 -0.09 -0.21 16 7 C -0.11 -0.20 9.70 22.27 0.22 0.02 16 8 C -0.12 -0.27 8.67 22.27 0.19 -0.08 16 9 C -0.12 -0.46 5.35 -19.87 -0.11 -0.57 16 10 C -0.08 -0.22 2.80 71.24 0.20 -0.02 16 11 O -0.55 -2.71 12.83 -148.98 -1.91 -4.62 16 12 Si 0.76 0.43 29.88 68.60 2.05 2.48 16 13 C -0.11 -0.50 9.69 22.26 0.22 -0.29 16 14 C -0.12 -0.38 9.70 22.27 0.22 -0.16 16 15 C 0.11 -0.04 4.46 45.52 0.20 0.16 16 16 H 0.08 0.43 7.23 -2.39 -0.02 0.42 16 17 C -0.13 0.26 7.21 31.12 0.22 0.48 16 18 C -0.07 0.30 3.31 -11.01 -0.04 0.26 16 19 H 0.12 -0.91 5.51 -2.39 -0.01 -0.92 16 20 C -0.08 0.05 5.29 -19.86 -0.11 -0.05 16 21 C -0.13 0.09 9.71 22.27 0.22 0.31 16 22 C -0.13 -0.02 10.05 22.27 0.22 0.20 16 23 C -0.14 -0.13 10.05 22.27 0.22 0.10 16 24 C -0.13 -0.13 10.05 22.27 0.22 0.09 16 25 C -0.13 -0.06 8.61 22.27 0.19 0.14 16 26 C -0.13 0.48 6.67 31.12 0.21 0.69 16 27 H 0.07 -0.87 8.14 -2.39 -0.02 -0.89 16 28 H 0.09 -1.29 6.44 -2.39 -0.02 -1.30 16 29 H 0.09 -0.99 4.83 -2.39 -0.01 -1.01 16 30 H 0.13 -1.16 7.35 -2.38 -0.02 -1.17 16 31 H 0.13 -1.21 8.05 -2.39 -0.02 -1.23 16 32 H 0.14 -0.31 8.06 -2.91 -0.02 -0.34 16 33 H 0.14 -0.19 4.85 -2.91 -0.01 -0.21 16 34 H 0.12 0.22 7.96 -2.38 -0.02 0.21 16 35 H 0.39 -0.40 8.70 -74.06 -0.64 -1.05 16 36 H -0.30 -2.36 7.11 99.48 0.71 -1.66 16 37 H -0.28 -0.90 7.01 99.48 0.70 -0.20 16 38 H 0.12 0.49 8.06 -2.91 -0.02 0.46 16 39 H 0.13 0.03 8.06 -2.91 -0.02 0.01 16 40 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.09 -0.07 7.72 -2.39 -0.02 -0.09 16 42 H 0.14 -0.65 8.05 -2.91 -0.02 -0.68 16 43 H 0.13 -0.43 8.06 -2.91 -0.02 -0.46 16 44 H 0.13 -0.27 8.06 -2.91 -0.02 -0.30 16 45 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 46 H 0.13 -0.24 6.66 -2.91 -0.02 -0.26 16 47 H 0.10 -0.31 6.31 -2.39 -0.02 -0.33 16 48 H 0.08 -0.39 7.36 -2.39 -0.02 -0.40 16 Total: 0.00 -20.45 383.45 2.25 -18.20 By element: Atomic # 1 Polarization: -12.14 SS G_CDS: 0.36 Total: -11.78 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 4.32 Total: 4.05 kcal Atomic # 7 Polarization: 1.37 SS G_CDS: -2.53 Total: -1.16 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -1.96 Total: -11.80 kcal Atomic # 14 Polarization: 0.43 SS G_CDS: 2.05 Total: 2.48 kcal Total: -20.45 2.25 -18.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14797354_12335836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.266 kcal (2) G-P(sol) polarization free energy of solvation -20.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds