Wall clock time and date at job start Tue Mar 9 2021 13:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35658 * 116.99525 * 2 1 4 4 C 1.40141 * 120.14470 * 179.97438 * 3 2 1 5 5 C 1.47537 * 120.19492 * 0.02562 * 4 3 2 6 6 O 1.21588 * 119.99776 * 322.81381 * 5 4 3 7 7 N 1.34774 * 119.99814 * 142.80781 * 5 4 3 8 8 C 1.46501 * 120.00613 * 5.82997 * 7 5 4 9 9 C 1.46500 * 119.99584 * 185.82646 * 7 5 4 10 10 H 1.08999 * 112.90832 * 52.37867 * 9 7 5 11 11 C 1.54061 * 113.61254 * 183.74014 * 9 7 5 12 12 C 1.53781 * 87.07483 * 89.07549 * 11 9 7 13 13 H 1.09004 * 113.68791 * 270.86932 * 12 11 9 14 14 C 1.50697 * 113.61605 * 139.98201 * 12 11 9 15 15 C 1.38236 * 119.99599 * 322.22710 * 14 12 11 16 16 C 1.38240 * 120.00073 * 179.79274 * 15 14 12 17 17 C 1.38238 * 119.99811 * 0.45936 * 16 15 14 18 18 C 1.38238 * 119.99856 * 359.76881 * 17 16 15 19 19 C 1.38232 * 119.99959 * 0.02714 * 18 17 16 20 20 C 1.53781 * 87.08542 * 25.42767 * 12 11 9 21 21 C 1.39712 * 119.61623 * 179.72285 * 4 3 2 22 22 C 1.37794 * 119.90289 * 0.25713 * 21 4 3 23 23 C 1.50698 * 119.84389 * 179.97438 * 22 21 4 24 24 O 1.42898 * 109.47383 * 65.00435 * 23 22 21 25 25 Si 1.86305 * 109.46923 * 184.99864 * 23 22 21 26 26 C 1.38538 * 120.30222 * 359.97438 * 22 21 4 27 27 C 1.38057 * 120.39314 * 0.02562 * 26 22 21 28 28 H 1.08994 * 109.47031 * 299.99871 * 1 2 3 29 29 H 1.09002 * 109.47051 * 59.99822 * 1 2 3 30 30 H 1.08997 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47267 * 216.05255 * 8 7 5 32 32 H 1.09002 * 109.46426 * 336.05330 * 8 7 5 33 33 H 1.08993 * 109.46973 * 96.04979 * 8 7 5 34 34 H 1.09003 * 113.61706 * 334.52933 * 11 9 7 35 35 H 1.09000 * 113.68723 * 203.62799 * 11 9 7 36 36 H 1.08000 * 120.00478 * 359.97438 * 15 14 12 37 37 H 1.07996 * 120.00221 * 180.25690 * 16 15 14 38 38 H 1.08001 * 120.00169 * 179.79577 * 17 16 15 39 39 H 1.08000 * 119.99724 * 179.97438 * 18 17 16 40 40 H 1.08005 * 120.00002 * 179.97438 * 19 18 17 41 41 H 1.09006 * 113.61043 * 89.11126 * 20 12 11 42 42 H 1.08994 * 113.62041 * 219.93556 * 20 12 11 43 43 H 1.08001 * 120.04738 * 180.27915 * 21 4 3 44 44 H 1.09000 * 109.47490 * 305.00188 * 23 22 21 45 45 H 0.96706 * 114.00210 * 180.02562 * 24 23 22 46 46 H 1.48498 * 109.99817 * 178.67869 * 25 23 22 47 47 H 1.48494 * 109.99980 * 300.00362 * 25 23 22 48 48 H 1.08002 * 119.80329 * 180.02562 * 26 22 21 49 49 H 1.08004 * 119.95993 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4441 1.2858 0.0005 5 6 4.2551 0.0533 0.0005 6 8 3.8882 -0.9158 0.6366 7 7 5.4024 0.0016 -0.7046 8 6 5.9105 1.2058 -1.3664 9 6 6.1417 -1.2588 -0.8092 10 1 5.5211 -2.0878 -1.1493 11 6 7.4751 -1.1309 -1.5703 12 6 8.1252 -0.7989 -0.2168 13 1 8.1173 0.2642 0.0238 14 6 9.4794 -1.4319 -0.0262 15 6 9.7179 -2.7092 -0.4981 16 6 10.9614 -3.2883 -0.3270 17 6 11.9636 -2.5937 0.3243 18 6 11.7237 -1.3183 0.8004 19 6 10.4815 -0.7377 0.6256 20 6 6.9789 -1.5873 0.4383 21 6 4.0668 2.5364 -0.0053 22 6 3.3036 3.6838 -0.0063 23 6 3.9766 5.0321 -0.0120 24 8 4.6951 5.2007 -1.2357 25 14 2.6888 6.3696 0.1411 26 6 1.9206 3.6034 -0.0019 27 6 1.2924 2.3740 0.0039 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 6.3744 0.9315 -2.3138 32 1 5.0856 1.8939 -1.5516 33 1 6.6492 1.6880 -0.7263 34 1 7.4955 -0.3031 -2.2793 35 1 7.8235 -2.0683 -2.0038 36 1 8.9336 -3.2536 -1.0030 37 1 11.1490 -4.2845 -0.6993 38 1 12.9342 -3.0474 0.4609 39 1 12.5065 -0.7759 1.3096 40 1 10.2939 0.2587 0.9979 41 1 7.1907 -2.6503 0.5545 42 1 6.5998 -1.1290 1.3516 43 1 5.1447 2.6039 -0.0095 44 1 4.6689 5.0963 0.8275 45 1 5.1546 6.0485 -1.3085 46 1 3.3421 7.7029 0.1687 47 1 1.7389 6.2928 -0.9976 48 1 1.3303 4.5078 -0.0031 49 1 0.2138 2.3195 0.0069 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14797354_12496546.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:52 Heat of formation + Delta-G solvation = 14.729120 kcal Electronic energy + Delta-G solvation = -31545.858583 eV Core-core repulsion = 27407.180482 eV Total energy + Delta-G solvation = -4138.678101 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.19243 -41.25509 -40.02712 -39.16636 -38.64091 -37.30909 -35.69836 -32.81727 -32.05457 -31.83697 -31.45628 -28.73761 -28.44213 -26.72028 -26.28957 -26.06785 -24.65652 -23.59906 -22.95060 -22.13629 -21.03335 -19.68618 -19.01013 -18.51071 -18.41434 -17.89458 -17.74981 -17.30092 -16.80665 -16.58883 -16.27834 -16.15318 -15.87478 -15.65232 -15.60639 -15.08119 -15.05077 -14.73088 -14.41015 -14.19484 -14.08590 -14.02919 -13.95712 -13.82053 -13.77257 -13.49095 -13.16375 -12.90280 -12.76293 -12.53839 -12.41548 -12.33269 -12.17843 -11.98605 -11.74390 -11.68900 -11.60037 -11.31355 -10.93954 -10.44188 -10.08126 -9.82079 -9.73366 -9.55369 -9.28439 -4.88630 -0.20589 0.19687 0.42795 0.49993 1.32980 1.60901 1.64551 1.83979 1.97401 2.22616 2.53903 2.82941 3.27521 3.37427 3.46442 3.61420 3.67363 3.68619 3.82407 3.93062 4.00347 4.02463 4.06457 4.15072 4.15526 4.22677 4.28072 4.29684 4.34000 4.34872 4.44695 4.55544 4.58164 4.59476 4.66438 4.67904 4.69169 4.73024 4.73694 4.86147 4.91473 4.97857 5.02707 5.07741 5.12670 5.17097 5.18354 5.29191 5.54379 5.56694 5.59397 5.64130 5.75148 6.12379 6.19419 6.33246 6.64897 7.08067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.167 3.833 4 C -0.193 4.193 5 C 0.561 3.439 6 O -0.564 6.564 7 N -0.592 5.592 8 C 0.053 3.947 9 C 0.119 3.881 10 H 0.076 0.924 11 C -0.124 4.124 12 C -0.061 4.061 13 H 0.103 0.897 14 C -0.079 4.079 15 C -0.127 4.127 16 C -0.129 4.129 17 C -0.137 4.137 18 C -0.130 4.130 19 C -0.129 4.129 20 C -0.133 4.133 21 C -0.028 4.028 22 C -0.127 4.127 23 C -0.075 4.075 24 O -0.554 6.554 25 Si 0.754 3.246 26 C -0.049 4.049 27 C -0.209 4.209 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.159 0.841 44 H 0.098 0.902 45 H 0.396 0.604 46 H -0.288 1.288 47 H -0.293 1.293 48 H 0.154 0.846 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.150 5.510 -0.704 5.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.119 3.881 4 C -0.197 4.197 5 C 0.351 3.649 6 O -0.443 6.443 7 N -0.324 5.324 8 C -0.088 4.088 9 C 0.015 3.985 10 H 0.094 0.906 11 C -0.161 4.161 12 C -0.079 4.079 13 H 0.121 0.879 14 C -0.079 4.079 15 C -0.144 4.144 16 C -0.147 4.147 17 C -0.155 4.155 18 C -0.147 4.147 19 C -0.147 4.147 20 C -0.172 4.172 21 C -0.046 4.046 22 C -0.127 4.127 23 C -0.184 4.184 24 O -0.364 6.364 25 Si 0.660 3.340 26 C -0.067 4.067 27 C -0.227 4.227 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.110 0.890 42 H 0.071 0.929 43 H 0.176 0.824 44 H 0.116 0.884 45 H 0.247 0.753 46 H -0.215 1.215 47 H -0.221 1.221 48 H 0.171 0.829 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.546 4.899 -0.852 5.002 hybrid contribution 0.690 0.149 -0.576 0.911 sum 0.144 5.048 -1.429 5.249 Atomic orbital electron populations 1.23437 0.76086 1.05556 1.02929 1.86208 1.23693 1.26706 1.87065 1.19277 0.91036 0.85498 0.92297 1.19278 0.91220 0.94102 1.15054 1.18332 0.80473 0.87330 0.78772 1.90779 1.71356 1.38630 1.43505 1.47492 1.22557 1.11134 1.51266 1.22627 1.00942 0.86388 0.98876 1.21950 0.92600 0.85922 0.98008 0.90633 1.23507 0.91770 1.04583 0.96267 1.21504 0.89747 0.99687 0.96936 0.87918 1.19850 0.95174 0.94698 0.98189 1.21224 0.97564 0.95117 1.00528 1.21434 0.93472 1.00683 0.99102 1.21457 1.00067 0.95286 0.98688 1.21432 0.97502 0.95867 0.99941 1.21298 0.93318 1.00627 0.99446 1.23334 0.95488 1.01038 0.97294 1.21469 1.01400 0.89023 0.92687 1.19304 0.93375 0.94235 1.05819 1.24825 1.03322 1.00595 0.89625 1.86528 1.68741 1.42874 1.38255 0.94177 0.78430 0.74220 0.87210 1.21252 0.93825 0.97970 0.93610 1.21415 1.01725 0.90734 1.08842 0.90730 0.90858 0.87280 0.89082 0.89312 0.90379 0.88511 0.87329 0.84972 0.84742 0.84854 0.84770 0.85153 0.89024 0.92926 0.82416 0.88426 0.75335 1.21462 1.22089 0.82918 0.81895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.32 -3.17 9.19 -73.45 -0.67 -3.84 16 3 C 0.17 1.23 6.67 22.84 0.15 1.38 16 4 C -0.19 -1.51 5.38 -20.01 -0.11 -1.62 16 5 C 0.56 6.57 7.19 86.70 0.62 7.19 16 6 O -0.56 -11.28 15.99 12.29 0.20 -11.08 16 7 N -0.59 -2.95 3.01 -822.87 -2.48 -5.42 16 8 C 0.05 -0.10 7.74 127.77 0.99 0.89 16 9 C 0.12 0.48 3.96 45.61 0.18 0.66 16 10 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 11 C -0.12 0.21 6.69 31.22 0.21 0.42 16 12 C -0.06 -0.02 3.67 -11.01 -0.04 -0.06 16 13 H 0.10 -0.10 7.14 -2.38 -0.02 -0.12 16 14 C -0.08 -0.18 5.29 -19.87 -0.11 -0.29 16 15 C -0.13 -0.26 8.60 22.27 0.19 -0.07 16 16 C -0.13 -0.27 10.05 22.27 0.22 -0.05 16 17 C -0.14 -0.30 10.05 22.27 0.22 -0.08 16 18 C -0.13 -0.29 10.05 22.27 0.22 -0.06 16 19 C -0.13 -0.31 9.71 22.27 0.22 -0.09 16 20 C -0.13 -0.61 7.25 31.12 0.23 -0.39 16 21 C -0.03 -0.06 7.01 22.52 0.16 0.10 16 22 C -0.13 0.00 5.38 -19.90 -0.11 -0.10 16 23 C -0.07 0.31 2.78 71.24 0.20 0.51 16 24 O -0.55 1.45 12.81 -148.98 -1.91 -0.46 16 25 Si 0.75 -3.62 29.84 68.60 2.05 -1.57 16 26 C -0.05 0.05 8.65 22.30 0.19 0.24 16 27 C -0.21 -0.19 9.03 22.34 0.20 0.01 16 28 H 0.07 -0.27 7.65 -2.39 -0.02 -0.29 16 29 H 0.07 -0.29 7.67 -2.39 -0.02 -0.31 16 30 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.09 -0.44 6.01 -2.39 -0.01 -0.46 16 32 H 0.09 -0.06 4.74 -2.39 -0.01 -0.08 16 33 H 0.08 -0.41 6.83 -2.39 -0.02 -0.43 16 34 H 0.10 -0.42 5.71 -2.39 -0.01 -0.43 16 35 H 0.11 -0.34 6.32 -2.39 -0.02 -0.35 16 36 H 0.13 -0.11 6.68 -2.91 -0.02 -0.13 16 37 H 0.13 -0.18 8.06 -2.91 -0.02 -0.21 16 38 H 0.13 -0.17 8.06 -2.91 -0.02 -0.19 16 39 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 40 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 41 H 0.09 0.41 7.71 -2.38 -0.02 0.39 16 42 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.16 -0.23 5.31 -2.91 -0.02 -0.24 16 44 H 0.10 -0.78 7.96 -2.39 -0.02 -0.80 16 45 H 0.40 -3.99 8.74 -74.05 -0.65 -4.63 16 46 H -0.29 0.05 7.11 99.48 0.71 0.76 16 47 H -0.29 -0.53 7.04 99.48 0.70 0.17 16 48 H 0.15 -0.85 4.84 -2.91 -0.01 -0.86 16 49 H 0.16 -0.75 6.30 -2.91 -0.02 -0.77 16 Total: 0.00 -23.78 386.20 2.53 -21.25 By element: Atomic # 1 Polarization: -8.95 SS G_CDS: 0.38 Total: -8.57 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 4.96 Total: 9.69 kcal Atomic # 7 Polarization: -2.95 SS G_CDS: -2.48 Total: -5.42 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -2.39 Total: -15.38 kcal Atomic # 14 Polarization: -3.62 SS G_CDS: 2.05 Total: -1.57 kcal Total: -23.78 2.53 -21.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14797354_12496546.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.984 kcal (2) G-P(sol) polarization free energy of solvation -23.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds