Wall clock time and date at job start Tue Mar 9 2021 13:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39285 * 121.03188 * 2 1 4 4 C 1.46493 * 134.20239 * 0.02562 * 3 2 1 5 5 C 1.50704 * 126.60080 * 359.97438 * 4 3 2 6 6 O 1.42904 * 109.46844 * 74.99873 * 5 4 3 7 7 Si 1.86298 * 109.47105 * 194.99930 * 5 4 3 8 8 C 1.34179 * 106.80428 * 180.02562 * 4 3 2 9 9 N 1.36953 * 109.94909 * 0.02562 * 8 4 3 10 10 C 1.37148 * 110.11494 * 359.97438 * 9 8 4 11 11 N 1.32817 * 132.96556 * 180.02562 * 10 9 8 12 12 C 1.31314 * 121.89323 * 179.72972 * 11 10 9 13 13 C 1.39746 * 121.03000 * 180.02562 * 2 1 3 14 14 C 1.47665 * 120.45483 * 359.97438 * 13 2 1 15 15 O 1.21571 * 120.00408 * 310.61256 * 14 13 2 16 16 N 1.34785 * 119.99708 * 130.60635 * 14 13 2 17 17 C 1.46499 * 120.00000 * 4.50851 * 16 14 13 18 18 C 1.46494 * 119.99743 * 184.50760 * 16 14 13 19 19 H 1.09004 * 112.91446 * 16.09235 * 18 16 14 20 20 C 1.53785 * 113.61460 * 147.34276 * 18 16 14 21 21 C 1.53780 * 87.07906 * 89.11582 * 20 18 16 22 22 H 1.09000 * 113.61688 * 270.88136 * 21 20 18 23 23 C 1.50707 * 113.69140 * 139.99429 * 21 20 18 24 24 C 1.38231 * 119.99798 * 322.18821 * 23 21 20 25 25 C 1.38228 * 119.99980 * 179.74257 * 24 23 21 26 26 C 1.38236 * 119.99986 * 0.55503 * 25 24 23 27 27 C 1.38235 * 119.99923 * 359.69813 * 26 25 24 28 28 C 1.38230 * 119.99742 * 0.02562 * 27 26 25 29 29 C 1.53782 * 113.61577 * 244.84327 * 18 16 14 30 30 H 1.09007 * 109.47261 * 275.66342 * 1 2 3 31 31 H 1.08998 * 109.47271 * 35.66239 * 1 2 3 32 32 H 1.08999 * 109.47494 * 155.66688 * 1 2 3 33 33 H 1.08998 * 109.46882 * 314.99888 * 5 4 3 34 34 H 0.96696 * 113.99826 * 180.02562 * 6 5 4 35 35 H 1.48500 * 109.99879 * 299.99766 * 7 5 4 36 36 H 1.48495 * 110.00067 * 61.32227 * 7 5 4 37 37 H 1.08000 * 125.02548 * 180.02562 * 8 4 3 38 38 H 0.96999 * 124.94258 * 180.02562 * 9 8 4 39 39 H 1.08004 * 119.30982 * 180.28076 * 12 11 10 40 40 H 1.09005 * 109.46957 * 215.59421 * 17 16 14 41 41 H 1.08995 * 109.47039 * 335.59435 * 17 16 14 42 42 H 1.08993 * 109.47379 * 95.59474 * 17 16 14 43 43 H 1.09002 * 113.61744 * 203.66059 * 20 18 16 44 44 H 1.08994 * 113.61659 * 334.56847 * 20 18 16 45 45 H 1.08002 * 120.00239 * 0.02562 * 24 23 21 46 46 H 1.08003 * 120.00379 * 180.27505 * 25 24 23 47 47 H 1.08003 * 120.00352 * 179.72376 * 26 25 24 48 48 H 1.07996 * 120.00201 * 179.97438 * 27 26 25 49 49 H 1.08007 * 120.00235 * 179.97438 * 28 27 26 50 50 H 1.08995 * 113.61593 * 25.42546 * 29 18 16 51 51 H 1.08997 * 113.61974 * 156.25633 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8516 2.6101 0.0005 5 6 0.4527 3.1706 0.0006 6 8 -0.1192 3.0236 1.3019 7 14 0.5073 4.9766 -0.4534 8 6 2.9948 3.3125 -0.0004 9 7 4.0669 2.4603 -0.0019 10 6 3.6348 1.1587 -0.0015 11 7 4.2720 -0.0066 -0.0021 12 6 3.6266 -1.1502 0.0037 13 6 2.2273 -1.1975 -0.0005 14 6 1.5224 -2.4950 -0.0005 15 8 0.6303 -2.7022 0.7990 16 7 1.8679 -3.4496 -0.8871 17 6 3.0066 -3.2385 -1.7843 18 6 1.1048 -4.6983 -0.9535 19 1 0.1382 -4.6320 -0.4541 20 6 1.0277 -5.2988 -2.3671 21 6 2.3282 -6.0490 -2.0341 22 1 3.2305 -5.4892 -2.2802 23 6 2.3594 -7.4649 -2.5493 24 6 1.2122 -8.2356 -2.5223 25 6 1.2394 -9.5326 -2.9997 26 6 2.4167 -10.0627 -3.4934 27 6 3.5653 -9.2938 -3.5156 28 6 3.5366 -7.9949 -3.0434 29 6 1.9197 -5.9403 -0.5555 30 1 -0.3634 0.1014 1.0227 31 1 -0.3634 0.8349 -0.5991 32 1 -0.3634 -0.9363 -0.4234 33 1 -0.1548 2.6314 -0.7263 34 1 -1.0215 3.3633 1.3757 35 1 1.3326 5.7227 0.5302 36 1 1.0706 5.1406 -1.8175 37 1 3.0599 4.3906 0.0001 38 1 4.9966 2.7371 -0.0024 39 1 4.1869 -2.0735 0.0076 40 1 2.7963 -3.6944 -2.7518 41 1 3.1728 -2.1692 -1.9149 42 1 3.8979 -3.6947 -1.3537 43 1 0.1708 -5.9557 -2.5165 44 1 1.1404 -4.5612 -3.1616 45 1 0.2934 -7.8229 -2.1325 46 1 0.3420 -10.1333 -2.9827 47 1 2.4392 -11.0775 -3.8623 48 1 4.4852 -9.7080 -3.9009 49 1 4.4340 -7.3942 -3.0603 50 1 2.7525 -5.7204 0.1124 51 1 1.3067 -6.7720 -0.2082 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14797354_12890568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:13 Heat of formation + Delta-G solvation = 81.955502 kcal Electronic energy + Delta-G solvation = -34290.241399 eV Core-core repulsion = 29930.318923 eV Total energy + Delta-G solvation = -4359.922476 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.99963 -41.89960 -40.52942 -39.16797 -38.56355 -37.66334 -35.56874 -35.22111 -32.26335 -32.01226 -31.73412 -30.91681 -29.04065 -28.47805 -26.75768 -26.60562 -25.87926 -24.52816 -24.18918 -23.50269 -22.41496 -21.27054 -20.48457 -19.70150 -19.32911 -18.77245 -18.31784 -18.05488 -17.49174 -17.45675 -17.03022 -16.46781 -16.23443 -16.14395 -15.85954 -15.50535 -15.30420 -15.14185 -15.07048 -14.98698 -14.43796 -14.35878 -14.21712 -14.16419 -14.05951 -13.96151 -13.80867 -13.73637 -13.60196 -13.29326 -13.05301 -12.90834 -12.81962 -12.69091 -12.60372 -12.11391 -11.93937 -11.74502 -11.62430 -11.32149 -11.25838 -11.14947 -10.60525 -10.12923 -9.81627 -9.78031 -9.67818 -9.50805 -9.25160 -4.90971 -0.36780 -0.16148 0.45542 0.52563 1.23102 1.34168 1.48058 1.52393 1.74333 1.79729 1.99754 2.54778 2.85759 3.17006 3.33237 3.38309 3.46939 3.51268 3.57641 3.69219 3.72800 3.84764 3.97600 4.00381 4.04865 4.06681 4.11575 4.17492 4.22516 4.24874 4.27682 4.33362 4.47196 4.52548 4.57970 4.59392 4.62415 4.69319 4.73045 4.76161 4.78182 4.86850 4.88676 4.96539 5.01879 5.02615 5.14188 5.15793 5.19340 5.20360 5.22288 5.55628 5.60896 5.61486 5.66794 5.77874 6.06779 6.15062 6.19924 6.71441 6.97179 6.99354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.057 3.943 3 C -0.161 4.161 4 C -0.158 4.158 5 C -0.054 4.054 6 O -0.565 6.565 7 Si 0.783 3.217 8 C 0.067 3.933 9 N -0.563 5.563 10 C 0.285 3.715 11 N -0.513 5.513 12 C 0.179 3.821 13 C -0.230 4.230 14 C 0.577 3.423 15 O -0.564 6.564 16 N -0.585 5.585 17 C 0.056 3.944 18 C 0.115 3.885 19 H 0.091 0.909 20 C -0.131 4.131 21 C -0.069 4.069 22 H 0.115 0.885 23 C -0.078 4.078 24 C -0.127 4.127 25 C -0.131 4.131 26 C -0.139 4.139 27 C -0.131 4.131 28 C -0.128 4.128 29 C -0.135 4.135 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.400 0.600 35 H -0.284 1.284 36 H -0.286 1.286 37 H 0.199 0.801 38 H 0.437 0.563 39 H 0.190 0.810 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.069 0.931 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.906 2.987 -5.126 6.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.048 3.952 3 C -0.168 4.168 4 C -0.165 4.165 5 C -0.163 4.163 6 O -0.374 6.374 7 Si 0.687 3.313 8 C -0.060 4.060 9 N -0.169 5.169 10 C 0.052 3.948 11 N -0.226 5.226 12 C 0.011 3.989 13 C -0.237 4.237 14 C 0.365 3.635 15 O -0.443 6.443 16 N -0.316 5.316 17 C -0.085 4.085 18 C 0.011 3.989 19 H 0.109 0.891 20 C -0.168 4.168 21 C -0.087 4.087 22 H 0.133 0.867 23 C -0.078 4.078 24 C -0.145 4.145 25 C -0.148 4.148 26 C -0.157 4.157 27 C -0.149 4.149 28 C -0.146 4.146 29 C -0.174 4.174 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.251 0.749 35 H -0.210 1.210 36 H -0.212 1.212 37 H 0.215 0.785 38 H 0.278 0.722 39 H 0.207 0.793 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.123 0.877 44 H 0.102 0.898 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.149 0.851 48 H 0.151 0.849 49 H 0.152 0.848 50 H 0.088 0.912 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.746 3.450 -4.829 5.981 hybrid contribution 0.099 -0.677 0.189 0.710 sum 0.845 2.773 -4.640 5.471 Atomic orbital electron populations 1.20846 0.88696 1.03166 1.03644 1.19951 0.97344 0.89529 0.88341 1.19647 0.93200 0.94085 1.09845 1.19997 0.94914 0.90195 1.11425 1.24392 0.90344 1.12643 0.88940 1.86502 1.35447 1.86388 1.29073 0.93805 0.88718 0.72742 0.76072 1.22019 0.85041 0.96472 1.02454 1.41498 1.10243 1.01981 1.63216 1.18736 0.89660 0.86596 0.99835 1.66546 1.40644 0.96230 1.19191 1.22986 0.89713 0.95058 0.91101 1.20444 0.95595 0.93265 1.14382 1.18016 0.82011 0.83259 0.80177 1.90788 1.32911 1.81055 1.39582 1.47446 1.31970 1.15893 1.36244 1.22397 0.88017 1.03195 0.94915 1.21957 0.95518 0.82725 0.98693 0.89068 1.23448 0.98407 0.99284 0.95705 1.21766 0.99502 0.92000 0.95459 0.86737 1.19868 0.93560 0.95829 0.98502 1.21230 0.98647 0.94352 1.00245 1.21420 0.98701 0.95983 0.98746 1.21438 0.93292 1.00674 1.00253 1.21429 0.98966 0.94694 0.99780 1.21319 0.98208 0.95943 0.99097 1.23424 1.00360 0.97464 0.96112 0.89995 0.89128 0.91723 0.89869 0.74871 1.21019 1.21237 0.78481 0.72223 0.79330 0.88664 0.90605 0.90002 0.87736 0.89776 0.85009 0.84987 0.85129 0.84941 0.84816 0.91200 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 8.88 71.23 0.63 0.00 16 2 C 0.06 0.49 5.97 -19.25 -0.11 0.37 16 3 C -0.16 -1.37 6.17 -20.19 -0.12 -1.50 16 4 C -0.16 -0.76 5.61 -18.64 -0.10 -0.86 16 5 C -0.05 0.05 2.22 71.24 0.16 0.21 16 6 O -0.56 -0.01 12.86 -148.98 -1.92 -1.93 16 7 Si 0.78 -4.00 30.80 68.60 2.11 -1.89 16 8 C 0.07 0.12 10.44 82.97 0.87 0.99 16 9 N -0.56 -1.38 6.04 -192.25 -1.16 -2.54 16 10 C 0.29 2.27 8.42 134.03 1.13 3.40 16 11 N -0.51 -3.98 10.37 -191.74 -1.99 -5.97 16 12 C 0.18 0.87 8.72 85.20 0.74 1.61 16 13 C -0.23 -1.68 4.89 -19.99 -0.10 -1.78 16 14 C 0.58 4.60 6.36 86.73 0.55 5.16 16 15 O -0.56 -8.63 15.25 -3.94 -0.06 -8.69 16 16 N -0.58 -0.84 3.08 -823.26 -2.53 -3.38 16 17 C 0.06 -0.26 7.36 127.77 0.94 0.68 16 18 C 0.11 0.08 4.39 45.52 0.20 0.28 16 19 H 0.09 0.42 7.35 -2.38 -0.02 0.41 16 20 C -0.13 0.43 6.67 31.12 0.21 0.64 16 21 C -0.07 0.22 3.34 -11.01 -0.04 0.18 16 22 H 0.11 -0.66 5.69 -2.39 -0.01 -0.67 16 23 C -0.08 0.00 5.29 -19.87 -0.11 -0.10 16 24 C -0.13 -0.07 8.60 22.27 0.19 0.13 16 25 C -0.13 -0.15 10.05 22.27 0.22 0.07 16 26 C -0.14 -0.19 10.05 22.27 0.22 0.03 16 27 C -0.13 -0.13 10.05 22.27 0.22 0.09 16 28 C -0.13 -0.05 9.71 22.27 0.22 0.17 16 29 C -0.14 0.11 7.27 31.12 0.23 0.34 16 30 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.09 0.15 5.75 -2.39 -0.01 0.14 16 32 H 0.06 0.47 6.54 -2.39 -0.02 0.46 16 33 H 0.08 -0.31 6.09 -2.39 -0.01 -0.32 16 34 H 0.40 -4.19 8.74 -74.06 -0.65 -4.84 16 35 H -0.28 -0.05 7.04 99.48 0.70 0.65 16 36 H -0.29 -0.01 7.11 99.48 0.71 0.70 16 37 H 0.20 -0.69 6.31 -2.91 -0.02 -0.71 16 38 H 0.44 -1.42 8.96 -92.71 -0.83 -2.25 16 39 H 0.19 -0.23 6.69 -2.91 -0.02 -0.25 16 40 H 0.09 -0.70 5.31 -2.38 -0.01 -0.71 16 41 H 0.08 -0.25 5.51 -2.39 -0.01 -0.26 16 42 H 0.08 -0.64 7.44 -2.39 -0.02 -0.66 16 43 H 0.10 -0.42 6.33 -2.39 -0.02 -0.43 16 44 H 0.08 -0.35 6.97 -2.39 -0.02 -0.37 16 45 H 0.13 -0.30 6.68 -2.91 -0.02 -0.32 16 46 H 0.13 -0.25 8.06 -2.91 -0.02 -0.28 16 47 H 0.13 -0.21 8.06 -2.91 -0.02 -0.24 16 48 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 49 H 0.13 -0.43 8.06 -2.91 -0.02 -0.45 16 50 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 51 H 0.09 -0.05 7.72 -2.39 -0.02 -0.07 16 Total: 0.00 -24.63 399.60 0.18 -24.45 By element: Atomic # 1 Polarization: -9.72 SS G_CDS: -0.43 Total: -10.15 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 6.15 Total: 10.09 kcal Atomic # 7 Polarization: -6.20 SS G_CDS: -5.68 Total: -11.89 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -1.98 Total: -10.62 kcal Atomic # 14 Polarization: -4.00 SS G_CDS: 2.11 Total: -1.89 kcal Total: -24.63 0.18 -24.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14797354_12890568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.408 kcal (2) G-P(sol) polarization free energy of solvation -24.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds