Wall clock time and date at job start Tue Mar 9 2021 13:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37872 * 126.46034 * 2 1 4 4 C 1.46682 * 126.22716 * 359.96783 * 3 2 1 5 5 O 1.21695 * 120.00347 * 6.98125 * 4 3 2 6 6 N 1.34780 * 119.99610 * 186.97716 * 4 3 2 7 7 C 1.46504 * 119.99908 * 6.26721 * 6 4 3 8 8 C 1.46494 * 120.00130 * 186.26568 * 6 4 3 9 9 H 1.09004 * 112.90908 * 348.74733 * 8 6 4 10 10 C 1.53781 * 113.61662 * 120.00237 * 8 6 4 11 11 C 1.53776 * 87.17192 * 89.07341 * 10 8 6 12 12 H 1.09001 * 113.61757 * 270.92705 * 11 10 8 13 13 C 1.50707 * 113.61131 * 140.02394 * 11 10 8 14 14 C 1.38236 * 119.99869 * 299.72529 * 13 11 10 15 15 C 1.38240 * 119.99845 * 179.81287 * 14 13 11 16 16 C 1.38239 * 119.99875 * 0.41566 * 15 14 13 17 17 C 1.38240 * 119.99741 * 359.82014 * 16 15 14 18 18 C 1.38232 * 119.99789 * 120.00319 * 13 11 10 19 19 C 1.53786 * 113.61422 * 217.50101 * 8 6 4 20 20 N 1.37647 * 107.53290 * 179.70371 * 3 2 1 21 21 C 1.35533 * 108.64686 * 0.26502 * 20 3 2 22 22 C 1.50694 * 125.56286 * 180.02562 * 21 20 3 23 23 O 1.42904 * 109.47178 * 299.99446 * 22 21 20 24 24 Si 1.86298 * 109.47094 * 179.97438 * 22 21 20 25 25 C 1.35447 * 108.86896 * 359.97438 * 21 20 3 26 26 H 1.08995 * 109.47469 * 89.99934 * 1 2 3 27 27 H 1.08996 * 109.47125 * 210.00111 * 1 2 3 28 28 H 1.08996 * 109.46995 * 329.99461 * 1 2 3 29 29 H 1.08993 * 109.46937 * 275.33360 * 7 6 4 30 30 H 1.09001 * 109.46950 * 35.33181 * 7 6 4 31 31 H 1.08999 * 109.46884 * 155.33310 * 7 6 4 32 32 H 1.08997 * 113.61537 * 203.66781 * 10 8 6 33 33 H 1.09003 * 113.61200 * 334.48397 * 10 8 6 34 34 H 1.08001 * 119.99843 * 0.02562 * 14 13 11 35 35 H 1.07994 * 119.99724 * 180.21238 * 15 14 13 36 36 H 1.07998 * 119.99724 * 179.78854 * 16 15 14 37 37 H 1.08001 * 119.99592 * 179.97438 * 17 16 15 38 38 H 1.07999 * 120.00025 * 359.97438 * 18 13 11 39 39 H 1.09000 * 113.61293 * 25.43458 * 19 8 6 40 40 H 1.09001 * 113.60787 * 156.33281 * 19 8 6 41 41 H 0.96999 * 125.67230 * 180.24245 * 20 3 2 42 42 H 1.09001 * 109.47751 * 59.99515 * 22 21 20 43 43 H 0.96696 * 113.99734 * 300.00617 * 23 22 21 44 44 H 1.48502 * 110.00477 * 58.67730 * 24 22 21 45 45 H 1.48502 * 110.00268 * 179.97438 * 24 22 21 46 46 H 1.08007 * 126.06563 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.1089 0.0000 4 6 1.8899 2.5092 -0.0007 5 8 0.7100 2.7790 0.1268 6 7 2.7955 3.4973 -0.1424 7 6 4.1943 3.1726 -0.4328 8 6 2.3813 4.8958 -0.0061 9 1 1.2982 5.0175 0.0138 10 6 3.1063 5.6458 1.1238 11 6 4.1829 6.0100 0.0880 12 1 4.9829 5.2735 0.0122 13 6 4.6953 7.4211 0.2205 14 6 3.8256 8.4874 0.0881 15 6 4.2949 9.7817 0.2135 16 6 5.6353 10.0097 0.4628 17 6 6.5058 8.9434 0.5904 18 6 6.0358 7.6491 0.4688 19 6 3.0900 5.8465 -0.9853 20 7 3.6284 0.6624 0.0068 21 6 3.6218 -0.6929 0.0050 22 6 4.8433 -1.5753 0.0113 23 8 5.6310 -1.3068 -1.1504 24 14 4.3182 -3.3628 0.0066 25 6 2.3380 -1.1247 -0.0023 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 4.7189 2.9603 0.4987 30 1 4.2371 2.2977 -1.0814 31 1 4.6675 4.0184 -0.9317 32 1 2.5542 6.5066 1.5010 33 1 3.4681 4.9936 1.9188 34 1 2.7790 8.3093 -0.1099 35 1 3.6148 10.6146 0.1135 36 1 6.0025 11.0210 0.5574 37 1 7.5531 9.1216 0.7847 38 1 6.7160 6.8161 0.5682 39 1 3.4398 5.3562 -1.8938 40 1 2.5334 6.7622 -1.1847 41 1 4.4190 1.2243 0.0117 42 1 5.4334 -1.3728 0.9051 43 1 5.1684 -1.4657 -1.9846 44 1 3.4860 -3.6446 -1.1906 45 1 5.5139 -4.2435 0.0121 46 1 2.0136 -2.1549 -0.0049 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14797354_13940406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:20 Heat of formation + Delta-G solvation = 63.191338 kcal Electronic energy + Delta-G solvation = -27722.162520 eV Core-core repulsion = 23967.068320 eV Total energy + Delta-G solvation = -3755.094200 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.86571 -41.63589 -40.10409 -38.84288 -37.84259 -35.85038 -33.50037 -32.22872 -31.80657 -31.28627 -29.01448 -28.00424 -27.26684 -26.77429 -25.40718 -23.74665 -23.04464 -21.98981 -21.53869 -20.27624 -20.04635 -18.88178 -18.38168 -17.85454 -17.37555 -16.96791 -16.55006 -16.33258 -16.22087 -15.94907 -15.53627 -15.28535 -15.07561 -14.94456 -14.41606 -14.29485 -14.28257 -14.19773 -13.98605 -13.89917 -13.66804 -13.60979 -13.47253 -13.08760 -13.05189 -12.99752 -12.70188 -12.28745 -12.12248 -11.86185 -11.75634 -11.66270 -11.24651 -11.11132 -10.80250 -9.96582 -9.83225 -9.79718 -9.56715 -9.19474 -4.83154 0.26280 0.41349 0.48669 1.22539 1.50476 1.65394 1.71951 1.93589 2.15485 2.26723 2.81266 3.29905 3.34238 3.51508 3.56493 3.61931 3.66619 3.80991 3.90316 3.98085 4.11152 4.13381 4.15697 4.22990 4.24623 4.28567 4.46615 4.49381 4.52704 4.59581 4.65538 4.69403 4.71357 4.77542 4.78259 4.88283 4.89604 4.92528 5.09600 5.11293 5.15565 5.16377 5.33559 5.44878 5.57127 5.63115 5.64537 5.71959 5.84504 6.11036 6.16051 6.33930 6.39562 6.94021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.084 4.084 3 C -0.070 4.070 4 C 0.586 3.414 5 O -0.560 6.560 6 N -0.594 5.594 7 C 0.041 3.959 8 C 0.113 3.887 9 H 0.093 0.907 10 C -0.132 4.132 11 C -0.071 4.071 12 H 0.117 0.883 13 C -0.079 4.079 14 C -0.127 4.127 15 C -0.130 4.130 16 C -0.138 4.138 17 C -0.130 4.130 18 C -0.127 4.127 19 C -0.134 4.134 20 N -0.520 5.520 21 C 0.031 3.969 22 C -0.063 4.063 23 O -0.547 6.547 24 Si 0.793 3.207 25 C -0.206 4.206 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.429 0.571 42 H 0.135 0.865 43 H 0.390 0.610 44 H -0.282 1.282 45 H -0.297 1.297 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 -0.721 0.732 4.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.183 4.183 4 C 0.378 3.622 5 O -0.439 6.439 6 N -0.326 5.326 7 C -0.101 4.101 8 C 0.009 3.991 9 H 0.111 0.889 10 C -0.171 4.171 11 C -0.089 4.089 12 H 0.135 0.865 13 C -0.079 4.079 14 C -0.145 4.145 15 C -0.148 4.148 16 C -0.156 4.156 17 C -0.148 4.148 18 C -0.145 4.145 19 C -0.171 4.171 20 N -0.125 5.125 21 C -0.088 4.088 22 C -0.171 4.171 23 O -0.355 6.355 24 Si 0.696 3.304 25 C -0.230 4.230 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.276 0.724 42 H 0.153 0.847 43 H 0.239 0.761 44 H -0.209 1.209 45 H -0.225 1.225 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.011 -0.996 0.818 4.213 hybrid contribution 0.504 1.059 -1.084 1.597 sum 4.515 0.063 -0.266 4.523 Atomic orbital electron populations 1.20360 0.89172 1.03191 1.02216 1.20179 0.96308 0.91224 1.01614 1.20054 0.84605 0.92909 1.20752 1.17337 0.85170 0.83760 0.75982 1.90796 1.17692 1.83511 1.51931 1.47408 1.09374 1.05380 1.70403 1.22613 0.81284 1.04057 1.02172 1.21970 0.99844 0.79462 0.97806 0.88913 1.23412 0.96956 1.00194 0.96523 1.21894 0.96901 0.93449 0.96655 0.86518 1.19848 0.93659 0.94987 0.99428 1.21234 1.00287 0.92424 1.00569 1.21428 0.96199 0.97495 0.99709 1.21453 0.93973 0.99912 1.00228 1.21444 1.00607 0.92927 0.99853 1.21315 0.95384 0.97546 1.00280 1.23522 0.96820 0.99614 0.97186 1.42905 1.07146 1.06881 1.55548 1.21322 0.97083 0.83735 1.06660 1.25072 0.91264 1.09030 0.91757 1.86570 1.42567 1.89635 1.16737 0.93267 0.79092 0.70249 0.87790 1.20836 0.90852 0.99485 1.11795 0.91649 0.89826 0.91960 0.90325 0.90382 0.86984 0.88582 0.91089 0.85096 0.84968 0.85044 0.84819 0.84723 0.90154 0.87788 0.72355 0.84744 0.76073 1.20857 1.22453 0.81570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 9.91 71.24 0.71 0.22 16 2 C -0.08 -0.46 6.21 -19.56 -0.12 -0.58 16 3 C -0.07 -0.36 6.63 40.35 0.27 -0.09 16 4 C 0.59 4.58 7.63 86.45 0.66 5.24 16 5 O -0.56 -8.34 14.27 -4.33 -0.06 -8.40 16 6 N -0.59 -0.70 3.08 -824.34 -2.54 -3.24 16 7 C 0.04 -0.25 7.40 127.77 0.95 0.70 16 8 C 0.11 0.09 4.47 45.52 0.20 0.29 16 9 H 0.09 0.49 7.21 -2.39 -0.02 0.47 16 10 C -0.13 0.20 7.20 31.12 0.22 0.43 16 11 C -0.07 0.27 3.31 -10.92 -0.04 0.23 16 12 H 0.12 -0.79 5.41 -2.39 -0.01 -0.81 16 13 C -0.08 0.04 5.29 -19.86 -0.11 -0.07 16 14 C -0.13 -0.04 8.63 22.27 0.19 0.15 16 15 C -0.13 -0.12 10.05 22.27 0.22 0.11 16 16 C -0.14 -0.13 10.05 22.27 0.22 0.09 16 17 C -0.13 -0.06 10.05 22.27 0.22 0.17 16 18 C -0.13 0.04 9.71 22.27 0.22 0.26 16 19 C -0.13 0.39 6.68 31.21 0.21 0.60 16 20 N -0.52 0.45 5.07 -171.94 -0.87 -0.42 16 21 C 0.03 -0.05 6.47 41.34 0.27 0.22 16 22 C -0.06 0.29 3.08 71.23 0.22 0.51 16 23 O -0.55 1.36 12.88 -148.98 -1.92 -0.56 16 24 Si 0.79 -3.87 30.54 68.60 2.10 -1.77 16 25 C -0.21 -0.11 9.27 22.01 0.20 0.09 16 26 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.08 0.09 8.14 -2.39 -0.02 0.08 16 28 H 0.06 0.61 6.37 -2.39 -0.02 0.59 16 29 H 0.08 -0.72 7.49 -2.39 -0.02 -0.74 16 30 H 0.08 -0.49 5.62 -2.39 -0.01 -0.50 16 31 H 0.11 -0.99 4.52 -2.39 -0.01 -1.00 16 32 H 0.10 -0.12 7.73 -2.39 -0.02 -0.13 16 33 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.13 -0.30 6.65 -2.91 -0.02 -0.32 16 35 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 36 H 0.13 -0.27 8.06 -2.91 -0.02 -0.30 16 37 H 0.13 -0.39 8.06 -2.91 -0.02 -0.41 16 38 H 0.13 -0.57 8.06 -2.91 -0.02 -0.59 16 39 H 0.08 -0.27 7.45 -2.39 -0.02 -0.29 16 40 H 0.10 -0.35 6.31 -2.39 -0.02 -0.36 16 41 H 0.43 -2.24 4.93 -92.71 -0.46 -2.70 16 42 H 0.13 -0.97 7.96 -2.39 -0.02 -0.99 16 43 H 0.39 -2.74 8.70 -74.06 -0.64 -3.38 16 44 H -0.28 0.04 7.11 99.48 0.71 0.75 16 45 H -0.30 -0.67 7.11 99.48 0.71 0.04 16 46 H 0.17 -0.63 6.17 -2.91 -0.02 -0.65 16 Total: 0.00 -18.52 361.25 1.39 -17.13 By element: Atomic # 1 Polarization: -11.27 SS G_CDS: -0.03 Total: -11.30 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 4.72 Total: 8.56 kcal Atomic # 7 Polarization: -0.25 SS G_CDS: -3.41 Total: -3.66 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -1.98 Total: -8.96 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.10 Total: -1.77 kcal Total: -18.52 1.39 -17.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14797354_13940406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.320 kcal (2) G-P(sol) polarization free energy of solvation -18.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds