Wall clock time and date at job start Tue Mar 9 2021 13:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35895 * 116.99581 * 2 1 4 4 C 1.38623 * 120.02274 * 180.02562 * 3 2 1 5 5 C 1.38649 * 119.88868 * 180.02562 * 4 3 2 6 6 O 1.35898 * 120.02553 * 179.97438 * 5 4 3 7 7 C 1.42897 * 117.00076 * 0.02562 * 6 5 4 8 8 C 1.50698 * 109.46949 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00578 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99750 * 180.02562 * 8 7 6 11 11 C 1.46505 * 120.00147 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00125 * 179.97438 * 10 8 7 13 13 H 1.09004 * 112.84993 * 11.19496 * 12 10 8 14 14 C 1.53782 * 113.61730 * 142.49760 * 12 10 8 15 15 C 1.53780 * 87.08018 * 89.11770 * 14 12 10 16 16 H 1.09001 * 113.61849 * 270.89043 * 15 14 12 17 17 C 1.50693 * 113.61646 * 139.98111 * 15 14 12 18 18 C 1.38243 * 120.00154 * 322.23472 * 17 15 14 19 19 C 1.38233 * 120.00138 * 179.76515 * 18 17 15 20 20 C 1.38236 * 119.99817 * 0.48068 * 19 18 17 21 21 C 1.38237 * 120.00059 * 359.79577 * 20 19 18 22 22 C 1.38230 * 120.00022 * 359.95366 * 21 20 19 23 23 C 1.53774 * 113.61829 * 240.00064 * 12 10 8 24 24 C 1.38755 * 119.94603 * 359.97438 * 5 4 3 25 25 C 1.50708 * 119.97211 * 179.72692 * 24 5 4 26 26 O 1.42906 * 109.46854 * 284.99717 * 25 24 5 27 27 Si 1.86301 * 109.47020 * 164.99933 * 25 24 5 28 28 C 1.38194 * 120.05434 * 359.97438 * 24 5 4 29 29 C 1.38153 * 120.11281 * 0.02562 * 28 24 5 30 30 H 1.09001 * 109.46790 * 299.99751 * 1 2 3 31 31 H 1.09004 * 109.47568 * 59.99920 * 1 2 3 32 32 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 33 33 H 1.07995 * 120.05538 * 0.02562 * 4 3 2 34 34 H 1.09005 * 109.46753 * 299.99773 * 7 6 5 35 35 H 1.09000 * 109.47294 * 59.99688 * 7 6 5 36 36 H 1.08992 * 109.46829 * 90.00050 * 11 10 8 37 37 H 1.08998 * 109.47002 * 210.00324 * 11 10 8 38 38 H 1.08998 * 109.46791 * 330.00236 * 11 10 8 39 39 H 1.08994 * 113.61780 * 203.66627 * 14 12 10 40 40 H 1.09004 * 113.61573 * 334.57256 * 14 12 10 41 41 H 1.07997 * 119.99767 * 359.97438 * 18 17 15 42 42 H 1.07996 * 119.99827 * 180.25221 * 19 18 17 43 43 H 1.08004 * 119.99939 * 179.76865 * 20 19 18 44 44 H 1.08002 * 119.99392 * 179.97438 * 21 20 19 45 45 H 1.08003 * 119.99850 * 180.02562 * 22 21 20 46 46 H 1.09004 * 113.61636 * 25.42564 * 23 12 10 47 47 H 1.09002 * 113.61866 * 156.33692 * 23 12 10 48 48 H 1.08999 * 109.47330 * 44.99355 * 25 24 5 49 49 H 0.96697 * 113.99565 * 300.00572 * 26 25 24 50 50 H 1.48498 * 109.99746 * 179.97438 * 27 25 24 51 51 H 1.48495 * 109.99805 * 301.31270 * 27 25 24 52 52 H 1.08004 * 119.94482 * 179.97438 * 28 24 5 53 53 H 1.07996 * 119.97837 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4302 1.2841 -0.0005 5 6 4.0567 2.5210 0.0000 6 8 5.4136 2.5960 0.0000 7 6 6.1316 1.3605 -0.0011 8 6 7.6124 1.6402 -0.0003 9 8 8.0135 2.7847 0.0006 10 7 8.4912 0.6183 -0.0017 11 6 8.0068 -0.7644 -0.0034 12 6 9.9307 0.8900 -0.0015 13 1 10.1639 1.9366 0.1949 14 6 10.7436 -0.0952 0.8550 15 6 10.8556 -0.9735 -0.4023 16 1 10.0373 -1.6852 -0.5121 17 6 12.2116 -1.6071 -0.5772 18 6 13.3528 -0.8999 -0.2477 19 6 14.5964 -1.4829 -0.4035 20 6 14.6995 -2.7696 -0.8982 21 6 13.5586 -3.4747 -1.2331 22 6 12.3147 -2.8936 -1.0724 23 6 10.6667 0.3137 -1.2224 24 6 3.2970 3.6821 0.0005 25 6 3.9774 5.0269 0.0073 26 8 4.4983 5.2905 1.3117 27 14 2.7456 6.3483 -0.4481 28 6 1.9172 3.6065 0.0000 29 6 1.2905 2.3752 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 4.0197 0.3792 -0.0014 34 1 5.8699 0.7874 0.8884 35 1 5.8699 0.7889 -0.8916 36 1 7.8866 -1.1059 -1.0314 37 1 8.7266 -1.4022 0.5096 38 1 7.0468 -0.8136 0.5104 39 1 11.6987 0.3059 1.1940 40 1 10.1671 -0.5541 1.6583 41 1 13.2725 0.1070 0.1347 42 1 15.4877 -0.9318 -0.1422 43 1 15.6713 -3.2237 -1.0235 44 1 13.6393 -4.4799 -1.6200 45 1 11.4234 -3.4448 -1.3336 46 1 10.0282 0.1847 -2.0964 47 1 11.6009 0.8265 -1.4514 48 1 4.7927 5.0253 -0.7160 49 1 3.8269 5.3067 2.0074 50 1 3.4040 7.6793 -0.4444 51 1 2.1730 6.0682 -1.7893 52 1 1.3276 4.5114 0.0008 53 1 0.2120 2.3187 -0.0005 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14797354_4974312.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:32 Heat of formation + Delta-G solvation = -33.946679 kcal Electronic energy + Delta-G solvation = -34970.166009 eV Core-core repulsion = 30355.157356 eV Total energy + Delta-G solvation = -4615.008653 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.11311 -41.64053 -40.55099 -39.85457 -38.90806 -38.22096 -36.92212 -35.61369 -32.31529 -32.10652 -31.76289 -31.31712 -29.48763 -28.48338 -28.34004 -26.77751 -26.11980 -25.70191 -23.94233 -23.46720 -22.52044 -22.36904 -21.15246 -20.04357 -19.64129 -18.54929 -18.30617 -17.89112 -17.74145 -17.67703 -17.17201 -17.06508 -16.73149 -16.51847 -16.19464 -16.15939 -16.02402 -15.74290 -15.46101 -15.16038 -14.99650 -14.76633 -14.46923 -14.39979 -14.27077 -14.14504 -14.02627 -13.80990 -13.58854 -13.50521 -13.30889 -13.16568 -13.07516 -13.02039 -12.72393 -12.50178 -12.27504 -12.13785 -12.01873 -11.87505 -11.74395 -11.66637 -11.62846 -11.23108 -10.96558 -10.36324 -9.85717 -9.80844 -9.70948 -9.54444 -9.10763 -5.04486 0.20273 0.29453 0.42398 0.49851 1.28914 1.30457 1.31215 1.64110 1.98082 2.21003 2.40598 2.57066 2.82535 3.22329 3.42651 3.59788 3.61897 3.67841 3.72829 3.77513 3.86555 3.89860 3.93592 4.01545 4.07923 4.13172 4.15214 4.15547 4.20881 4.29721 4.34008 4.38323 4.44491 4.46047 4.51224 4.57254 4.59494 4.60793 4.65622 4.69889 4.78151 4.80667 4.81800 4.89500 4.94405 5.01728 5.12882 5.14650 5.17129 5.22916 5.27368 5.44665 5.50969 5.58480 5.64218 5.73884 6.05103 6.12307 6.20372 6.37583 6.85865 6.91646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.164 3.836 4 C -0.253 4.253 5 C 0.172 3.828 6 O -0.306 6.306 7 C 0.040 3.960 8 C 0.512 3.488 9 O -0.569 6.569 10 N -0.587 5.587 11 C 0.049 3.951 12 C 0.110 3.890 13 H 0.083 0.917 14 C -0.131 4.131 15 C -0.068 4.068 16 H 0.122 0.878 17 C -0.079 4.079 18 C -0.129 4.129 19 C -0.131 4.131 20 C -0.138 4.138 21 C -0.130 4.130 22 C -0.126 4.126 23 C -0.134 4.134 24 C -0.203 4.203 25 C -0.070 4.070 26 O -0.558 6.558 27 Si 0.796 3.204 28 C -0.031 4.031 29 C -0.237 4.237 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.151 0.849 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.391 0.609 50 H -0.304 1.304 51 H -0.280 1.280 52 H 0.167 0.833 53 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 -7.656 1.537 10.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.118 3.882 4 C -0.272 4.272 5 C 0.126 3.874 6 O -0.219 6.219 7 C -0.037 4.037 8 C 0.301 3.699 9 O -0.447 6.447 10 N -0.321 5.321 11 C -0.092 4.092 12 C 0.006 3.994 13 H 0.101 0.899 14 C -0.169 4.169 15 C -0.086 4.086 16 H 0.140 0.860 17 C -0.079 4.079 18 C -0.147 4.147 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.148 4.148 22 C -0.143 4.143 23 C -0.173 4.173 24 C -0.204 4.204 25 C -0.178 4.178 26 O -0.365 6.365 27 Si 0.701 3.299 28 C -0.048 4.048 29 C -0.255 4.255 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.169 0.831 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.104 0.896 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.155 0.845 46 H 0.090 0.910 47 H 0.109 0.891 48 H 0.097 0.903 49 H 0.240 0.760 50 H -0.233 1.233 51 H -0.206 1.206 52 H 0.184 0.816 53 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.895 -6.470 0.656 8.777 hybrid contribution 0.931 -0.397 -0.369 1.078 sum -4.963 -6.867 0.287 8.478 Atomic orbital electron populations 1.23417 0.75921 1.05726 1.02788 1.86055 1.23828 1.26530 1.87916 1.18865 0.91539 0.85111 0.92667 1.20529 0.93561 0.97246 1.15911 1.18645 0.81584 0.93427 0.93777 1.86220 1.15784 1.31665 1.88200 1.22746 0.88315 0.86408 1.06272 1.20520 0.88574 0.84815 0.76038 1.90760 1.80572 1.23108 1.50299 1.47460 1.05028 1.07201 1.72377 1.22476 1.02171 0.80337 1.04177 1.21956 0.79219 0.99978 0.98209 0.89921 1.23451 1.00653 0.95982 0.96843 1.21832 0.94708 0.95742 0.96288 0.86013 1.19867 0.94880 0.94405 0.98762 1.21225 0.92344 1.00420 1.00686 1.21411 0.98141 0.95854 0.99528 1.21446 0.99436 0.95181 0.99515 1.21449 0.92737 1.00724 0.99868 1.21329 0.98352 0.95050 0.99611 1.23412 1.00677 0.96197 0.96998 1.19750 0.93876 0.93959 1.12844 1.25154 1.04408 0.99834 0.88379 1.86546 1.39290 1.93795 1.16909 0.94128 0.80346 0.72982 0.82463 1.20865 0.91438 0.98676 0.93844 1.21456 1.01823 0.91133 1.11125 0.91024 0.91335 0.86603 0.83092 0.86083 0.86274 0.90252 0.88216 0.88850 0.88149 0.89559 0.85372 0.85122 0.85067 0.84732 0.84486 0.90983 0.89054 0.90340 0.76005 1.23262 1.20618 0.81595 0.82041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.08 10.49 -92.37 -0.97 -1.05 16 3 C 0.16 0.23 6.68 22.49 0.15 0.38 16 4 C -0.25 -0.66 8.97 22.46 0.20 -0.46 16 5 C 0.17 1.14 6.66 22.49 0.15 1.29 16 6 O -0.31 -3.19 8.99 -73.36 -0.66 -3.85 16 7 C 0.04 0.08 3.77 71.24 0.27 0.35 16 8 C 0.51 3.98 7.75 87.66 0.68 4.66 16 9 O -0.57 -11.00 15.98 16.00 0.26 -10.74 16 10 N -0.59 -0.38 3.08 -819.65 -2.53 -2.91 16 11 C 0.05 -0.41 8.65 127.77 1.10 0.69 16 12 C 0.11 0.21 4.46 45.52 0.20 0.41 16 13 H 0.08 0.65 7.23 -2.38 -0.02 0.63 16 14 C -0.13 0.32 6.67 31.12 0.21 0.53 16 15 C -0.07 0.23 3.31 -11.01 -0.04 0.19 16 16 H 0.12 -0.86 5.50 -2.39 -0.01 -0.87 16 17 C -0.08 0.00 5.29 -19.87 -0.11 -0.10 16 18 C -0.13 -0.15 8.60 22.27 0.19 0.04 16 19 C -0.13 -0.22 10.05 22.27 0.22 0.01 16 20 C -0.14 -0.19 10.05 22.27 0.22 0.03 16 21 C -0.13 -0.08 10.05 22.27 0.22 0.14 16 22 C -0.13 0.03 9.71 22.27 0.22 0.24 16 23 C -0.13 0.05 7.21 31.12 0.22 0.27 16 24 C -0.20 -0.98 5.27 -19.75 -0.10 -1.08 16 25 C -0.07 -0.48 2.38 71.24 0.17 -0.31 16 26 O -0.56 -4.75 12.88 -148.98 -1.92 -6.67 16 27 Si 0.80 0.88 29.92 68.60 2.05 2.93 16 28 C -0.03 0.04 8.65 22.24 0.19 0.23 16 29 C -0.24 0.45 9.04 22.38 0.20 0.65 16 30 H 0.07 -0.67 7.66 -2.39 -0.02 -0.69 16 31 H 0.07 -0.61 7.66 -2.38 -0.02 -0.63 16 32 H 0.12 -1.15 8.14 -2.39 -0.02 -1.17 16 33 H 0.15 -0.26 6.30 -2.91 -0.02 -0.28 16 34 H 0.12 -0.46 6.92 -2.38 -0.02 -0.48 16 35 H 0.12 -0.43 7.63 -2.39 -0.02 -0.45 16 36 H 0.08 -0.84 8.14 -2.39 -0.02 -0.86 16 37 H 0.10 -1.03 4.83 -2.39 -0.01 -1.05 16 38 H 0.09 -1.11 6.44 -2.39 -0.02 -1.12 16 39 H 0.10 -0.23 6.32 -2.39 -0.02 -0.25 16 40 H 0.09 -0.34 7.36 -2.38 -0.02 -0.36 16 41 H 0.13 -0.13 6.68 -2.91 -0.02 -0.15 16 42 H 0.13 -0.16 8.06 -2.91 -0.02 -0.18 16 43 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 44 H 0.13 -0.39 8.06 -2.91 -0.02 -0.41 16 45 H 0.14 -0.60 8.06 -2.91 -0.02 -0.62 16 46 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 47 H 0.09 0.06 7.71 -2.39 -0.02 0.04 16 48 H 0.08 1.02 7.82 -2.39 -0.02 1.00 16 49 H 0.39 -0.65 8.70 -74.06 -0.64 -1.30 16 50 H -0.30 -2.82 7.11 99.48 0.71 -2.12 16 51 H -0.28 -1.32 7.11 99.48 0.71 -0.61 16 52 H 0.17 -1.30 5.12 -2.91 -0.01 -1.31 16 53 H 0.16 -1.24 6.29 -2.91 -0.02 -1.26 16 Total: 0.00 -30.12 421.41 2.28 -27.84 By element: Atomic # 1 Polarization: -15.06 SS G_CDS: 0.35 Total: -14.71 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 5.70 Total: 9.16 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -2.53 Total: -2.91 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -3.29 Total: -22.31 kcal Atomic # 14 Polarization: 0.88 SS G_CDS: 2.05 Total: 2.93 kcal Total: -30.12 2.28 -27.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14797354_4974312.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.108 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds