Wall clock time and date at job start Tue Mar 9 2021 13:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34771 * 120.00173 * 2 1 4 4 O 1.21286 * 120.00396 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99957 * 0.02562 * 3 2 1 6 6 N 1.46506 * 109.47436 * 179.97438 * 5 3 2 7 7 C 1.36832 * 125.06219 * 265.03384 * 6 5 3 8 8 C 1.34242 * 109.93768 * 179.97438 * 7 6 5 9 9 C 1.50699 * 126.49906 * 180.02562 * 8 7 6 10 10 O 1.42902 * 109.46646 * 104.97731 * 9 8 7 11 11 Si 1.86299 * 109.47458 * 344.97436 * 9 8 7 12 12 C 1.46490 * 106.99769 * 359.97438 * 8 7 6 13 13 C 1.39591 * 134.03949 * 180.02562 * 12 8 7 14 14 C 1.36662 * 119.76515 * 179.97438 * 13 12 8 15 15 C 1.38792 * 120.53033 * 0.02562 * 14 13 12 16 16 C 1.37787 * 120.66396 * 359.97438 * 15 14 13 17 17 C 1.37681 * 125.06064 * 84.72013 * 6 5 3 18 18 C 1.46501 * 119.99744 * 180.02562 * 2 1 3 19 19 H 1.09008 * 112.84595 * 245.18787 * 18 2 1 20 20 C 1.54050 * 113.61370 * 16.49901 * 18 2 1 21 21 C 1.53774 * 86.98479 * 89.11837 * 20 18 2 22 22 H 1.09003 * 113.61561 * 270.83846 * 21 20 18 23 23 C 1.50699 * 113.61494 * 140.01960 * 21 20 18 24 24 C 1.38242 * 119.99874 * 320.58649 * 23 21 20 25 25 C 1.38234 * 119.99705 * 179.78594 * 24 23 21 26 26 C 1.38237 * 120.00130 * 0.44619 * 25 24 23 27 27 C 1.38234 * 119.99819 * 359.80966 * 26 25 24 28 28 C 1.38226 * 120.00210 * 359.97438 * 27 26 25 29 29 C 1.53781 * 87.17688 * 25.42897 * 21 20 18 30 30 H 1.08997 * 109.46801 * 264.66129 * 1 2 3 31 31 H 1.09000 * 109.46898 * 24.65943 * 1 2 3 32 32 H 1.08995 * 109.47117 * 144.65551 * 1 2 3 33 33 H 1.09000 * 109.47661 * 300.00111 * 5 3 2 34 34 H 1.09003 * 109.47232 * 60.00173 * 5 3 2 35 35 H 1.07999 * 125.03281 * 359.95205 * 7 6 5 36 36 H 1.08996 * 109.46843 * 224.97269 * 9 8 7 37 37 H 0.96704 * 113.99694 * 179.97438 * 10 9 8 38 38 H 1.48496 * 109.99968 * 298.68057 * 11 9 8 39 39 H 1.48503 * 109.99861 * 60.00060 * 11 9 8 40 40 H 1.08000 * 120.11858 * 0.02562 * 13 12 8 41 41 H 1.08003 * 119.73439 * 180.02562 * 14 13 12 42 42 H 1.07995 * 119.66451 * 179.97438 * 15 14 13 43 43 H 1.08000 * 120.11239 * 180.02562 * 16 15 14 44 44 H 1.08998 * 113.69395 * 334.59810 * 20 18 2 45 45 H 1.08997 * 113.61075 * 203.62440 * 20 18 2 46 46 H 1.07993 * 119.99967 * 0.02562 * 24 23 21 47 47 H 1.08003 * 119.99586 * 180.27455 * 25 24 23 48 48 H 1.08000 * 119.99592 * 179.82889 * 26 25 24 49 49 H 1.07999 * 119.99637 * 180.02562 * 27 26 25 50 50 H 1.08002 * 120.00080 * 180.02562 * 28 27 26 51 51 H 1.08999 * 113.61422 * 89.06843 * 29 21 20 52 52 H 1.08997 * 113.61358 * 219.89754 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1672 -0.0005 5 6 1.3855 2.4723 0.0006 6 7 2.3375 3.5858 0.0011 7 6 2.7746 4.2458 1.1172 8 6 3.6401 5.2110 0.7687 9 6 4.3468 6.1607 1.7013 10 8 5.7138 5.7667 1.8362 11 14 3.5213 6.1210 3.3709 12 6 3.7684 5.1650 -0.6898 13 6 4.5034 5.8982 -1.6229 14 6 4.4014 5.5999 -2.9527 15 6 3.5722 4.5736 -3.3834 16 6 2.8379 3.8372 -2.4796 17 6 2.9302 4.1201 -1.1209 18 6 2.1975 -1.2688 -0.0006 19 1 2.7742 -1.4249 0.9112 20 6 1.3339 -2.4796 -0.4020 21 6 1.7382 -2.1832 -1.8557 22 1 1.0677 -1.4892 -2.3625 23 6 2.0225 -3.4206 -2.6676 24 6 2.6938 -4.4843 -2.0942 25 6 2.9506 -5.6211 -2.8376 26 6 2.5442 -5.6905 -4.1571 27 6 1.8776 -4.6247 -4.7319 28 6 1.6169 -3.4897 -3.9873 29 6 3.0017 -1.5153 -1.2880 30 1 -0.3633 -0.0956 1.0232 31 1 -0.3633 0.9340 -0.4288 32 1 -0.3633 -0.8382 -0.5945 33 1 0.7584 2.5303 -0.8891 34 1 0.7592 2.5298 0.8909 35 1 2.4683 4.0235 2.1287 36 1 4.2983 7.1713 1.2959 37 1 6.2308 6.3351 2.4233 38 1 2.1078 6.5592 3.2492 39 1 3.5809 4.7483 3.9344 40 1 5.1509 6.6980 -1.2951 41 1 4.9706 6.1673 -3.6741 42 1 3.5020 4.3500 -4.4376 43 1 2.1958 3.0403 -2.8245 44 1 0.2702 -2.3425 -0.2079 45 1 1.7143 -3.4302 -0.0282 46 1 3.0142 -4.4288 -1.0644 47 1 3.4712 -6.4539 -2.3883 48 1 2.7474 -6.5776 -4.7387 49 1 1.5598 -4.6791 -5.7627 50 1 1.0957 -2.6571 -4.4363 51 1 3.8372 -2.2027 -1.1559 52 1 3.2842 -0.6009 -1.8097 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14797354_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:14 Heat of formation + Delta-G solvation = 79.832952 kcal Electronic energy + Delta-G solvation = -34191.482511 eV Core-core repulsion = 29896.893905 eV Total energy + Delta-G solvation = -4294.588606 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.178 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.70934 -41.83061 -40.34165 -38.86315 -38.09801 -37.59943 -35.81506 -34.22861 -32.11273 -31.80987 -31.38439 -30.38886 -29.14945 -28.50585 -26.72356 -26.08843 -25.41617 -23.95248 -23.62734 -23.00663 -22.35700 -21.21876 -20.61815 -19.57976 -18.57234 -18.34901 -18.22093 -18.05935 -17.83079 -17.31722 -16.78559 -16.54776 -16.23661 -16.14140 -15.69335 -15.55972 -15.30817 -15.06571 -14.93150 -14.81440 -14.68143 -14.34264 -14.24832 -14.18269 -14.14623 -14.09423 -13.80317 -13.64372 -13.44955 -13.02310 -12.86007 -12.76710 -12.70536 -12.65757 -12.52847 -12.27972 -12.05898 -11.83398 -11.80074 -11.61289 -11.47161 -11.12582 -10.64253 -10.18569 -9.87022 -9.82521 -9.60307 -9.27675 -8.75444 -4.96953 0.02146 0.37694 0.45137 0.54914 1.19939 1.30775 1.32707 1.54457 1.69041 1.88380 1.97627 2.77605 2.85046 3.15792 3.37208 3.42992 3.51651 3.56188 3.61043 3.64203 3.77938 3.86875 3.88094 3.96261 3.96868 4.09982 4.12897 4.15850 4.17625 4.20514 4.25213 4.32372 4.45593 4.46884 4.49846 4.58868 4.59665 4.61151 4.63400 4.68964 4.75449 4.79052 4.82353 4.90363 4.94966 5.05208 5.07764 5.10581 5.12607 5.42310 5.45075 5.53888 5.56736 5.59591 5.63574 5.64438 5.68536 5.99449 6.07541 6.11249 6.19921 6.91053 6.98546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.592 5.592 3 C 0.489 3.511 4 O -0.567 6.567 5 C 0.090 3.910 6 N -0.468 5.468 7 C 0.052 3.948 8 C -0.179 4.179 9 C -0.052 4.052 10 O -0.571 6.571 11 Si 0.789 3.211 12 C -0.119 4.119 13 C -0.081 4.081 14 C -0.151 4.151 15 C -0.102 4.102 16 C -0.137 4.137 17 C 0.091 3.909 18 C 0.119 3.881 19 H 0.072 0.928 20 C -0.120 4.120 21 C -0.060 4.060 22 H 0.103 0.897 23 C -0.081 4.081 24 C -0.127 4.127 25 C -0.129 4.129 26 C -0.136 4.136 27 C -0.129 4.129 28 C -0.129 4.129 29 C -0.133 4.133 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.174 0.826 36 H 0.081 0.919 37 H 0.398 0.602 38 H -0.281 1.281 39 H -0.296 1.296 40 H 0.129 0.871 41 H 0.145 0.855 42 H 0.150 0.850 43 H 0.131 0.869 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.131 0.869 47 H 0.135 0.865 48 H 0.134 0.866 49 H 0.135 0.865 50 H 0.130 0.870 51 H 0.086 0.914 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.928 0.053 1.640 7.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.325 5.325 3 C 0.276 3.724 4 O -0.445 6.445 5 C -0.035 4.035 6 N -0.151 5.151 7 C -0.073 4.073 8 C -0.187 4.187 9 C -0.161 4.161 10 O -0.380 6.380 11 Si 0.693 3.307 12 C -0.123 4.123 13 C -0.100 4.100 14 C -0.170 4.170 15 C -0.121 4.121 16 C -0.157 4.157 17 C -0.014 4.014 18 C 0.015 3.985 19 H 0.090 0.910 20 C -0.157 4.157 21 C -0.078 4.078 22 H 0.121 0.879 23 C -0.081 4.081 24 C -0.144 4.144 25 C -0.147 4.147 26 C -0.154 4.154 27 C -0.147 4.147 28 C -0.147 4.147 29 C -0.171 4.171 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.164 0.836 34 H 0.170 0.830 35 H 0.191 0.809 36 H 0.099 0.901 37 H 0.249 0.751 38 H -0.208 1.208 39 H -0.223 1.223 40 H 0.147 0.853 41 H 0.162 0.838 42 H 0.167 0.833 43 H 0.149 0.851 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.149 0.851 47 H 0.153 0.847 48 H 0.152 0.848 49 H 0.152 0.848 50 H 0.148 0.852 51 H 0.104 0.896 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.371 -1.006 1.740 7.640 hybrid contribution 0.413 -0.412 -0.654 0.877 sum -6.958 -1.418 1.086 7.183 Atomic orbital electron populations 1.22360 0.76491 1.05608 1.04297 1.47664 1.08431 1.04000 1.72445 1.21366 0.88070 0.86473 0.76533 1.90804 1.15907 1.87574 1.50186 1.22021 0.90448 0.81562 1.09432 1.43407 1.38889 1.28389 1.04367 1.21700 0.99700 0.94504 0.91427 1.20053 1.03803 1.02411 0.92385 1.24338 0.86886 0.97148 1.07678 1.86517 1.21098 1.58317 1.72101 0.94155 0.78640 0.81347 0.76570 1.19357 1.00847 0.98879 0.93222 1.20506 0.97808 0.99082 0.92574 1.20983 1.00995 0.99491 0.95515 1.21185 0.95644 0.95068 1.00153 1.20235 1.03949 1.02639 0.88871 1.18480 0.97613 0.96259 0.89098 1.21936 0.94810 0.83990 0.97733 0.91035 1.23471 1.01644 0.96826 0.93794 1.21493 0.97453 0.94051 0.94803 0.87932 1.19866 0.98313 0.95477 0.94475 1.21208 0.99147 0.93436 1.00652 1.21439 0.99973 0.98560 0.94745 1.21462 0.98779 0.99443 0.95739 1.21437 0.98839 0.93731 1.00718 1.21299 1.00706 0.98652 0.94036 1.23246 0.97213 1.00027 0.96658 0.90264 0.88569 0.88696 0.83594 0.83008 0.80947 0.90144 0.75114 1.20757 1.22321 0.85310 0.83772 0.83265 0.85146 0.87765 0.87590 0.85072 0.84744 0.84821 0.84751 0.85163 0.89581 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.57 9.74 127.77 1.24 0.68 16 2 N -0.59 0.87 3.01 -819.11 -2.47 -1.60 16 3 C 0.49 2.43 7.46 87.66 0.65 3.08 16 4 O -0.57 -9.51 15.60 -3.05 -0.05 -9.56 16 5 C 0.09 -0.08 4.96 85.63 0.42 0.34 16 6 N -0.47 -3.82 2.27 -519.97 -1.18 -5.00 16 7 C 0.05 0.51 9.89 83.00 0.82 1.33 16 8 C -0.18 -2.10 5.61 -18.63 -0.10 -2.21 16 9 C -0.05 -0.26 3.05 71.24 0.22 -0.05 16 10 O -0.57 -3.79 12.86 -148.98 -1.92 -5.70 16 11 Si 0.79 0.00 30.79 68.60 2.11 2.12 16 12 C -0.12 -1.63 6.35 -20.20 -0.13 -1.76 16 13 C -0.08 -0.87 10.05 22.23 0.22 -0.65 16 14 C -0.15 -1.10 9.97 22.03 0.22 -0.88 16 15 C -0.10 -0.64 10.01 22.30 0.22 -0.42 16 16 C -0.14 -1.11 10.00 22.37 0.22 -0.89 16 17 C 0.09 1.06 6.79 39.03 0.27 1.33 16 18 C 0.12 0.08 4.10 45.61 0.19 0.26 16 19 H 0.07 0.26 8.14 -2.38 -0.02 0.25 16 20 C -0.12 0.56 6.59 31.21 0.21 0.77 16 21 C -0.06 0.08 3.75 -11.02 -0.04 0.04 16 22 H 0.10 -0.29 7.98 -2.39 -0.02 -0.31 16 23 C -0.08 -0.13 5.29 -19.86 -0.11 -0.23 16 24 C -0.13 -0.20 8.53 22.27 0.19 -0.01 16 25 C -0.13 -0.23 10.05 22.27 0.22 -0.01 16 26 C -0.14 -0.26 10.05 22.27 0.22 -0.03 16 27 C -0.13 -0.24 10.05 22.27 0.22 -0.01 16 28 C -0.13 -0.24 9.71 22.27 0.22 -0.02 16 29 C -0.13 -0.50 6.89 31.12 0.21 -0.28 16 30 H 0.08 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H 0.10 -1.41 6.25 -2.39 -0.01 -1.42 16 32 H 0.09 -1.18 5.63 -2.39 -0.01 -1.19 16 33 H 0.15 -1.04 7.42 -2.39 -0.02 -1.06 16 34 H 0.15 -1.21 8.08 -2.39 -0.02 -1.23 16 35 H 0.17 0.98 6.30 -2.91 -0.02 0.96 16 36 H 0.08 0.15 7.96 -2.39 -0.02 0.13 16 37 H 0.40 -2.03 8.74 -74.05 -0.65 -2.68 16 38 H -0.28 -1.10 7.11 99.48 0.71 -0.39 16 39 H -0.30 -1.97 7.04 99.48 0.70 -1.27 16 40 H 0.13 1.01 8.06 -2.91 -0.02 0.99 16 41 H 0.14 0.30 8.06 -2.91 -0.02 0.28 16 42 H 0.15 0.09 8.06 -2.91 -0.02 0.06 16 43 H 0.13 0.46 8.06 -2.91 -0.02 0.43 16 44 H 0.10 -0.90 5.82 -2.39 -0.01 -0.91 16 45 H 0.11 -0.55 6.41 -2.39 -0.02 -0.57 16 46 H 0.13 -0.18 6.73 -2.91 -0.02 -0.20 16 47 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 48 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 49 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 50 H 0.13 -0.17 8.05 -2.91 -0.02 -0.19 16 51 H 0.09 0.41 7.62 -2.39 -0.02 0.39 16 52 H 0.05 0.46 7.42 -2.39 -0.02 0.45 16 Total: 0.00 -31.23 420.66 2.65 -28.57 By element: Atomic # 1 Polarization: -9.54 SS G_CDS: 0.33 Total: -9.21 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.82 Total: 0.38 kcal Atomic # 7 Polarization: -2.96 SS G_CDS: -3.65 Total: -6.60 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -1.96 Total: -15.26 kcal Atomic # 14 Polarization: 0.00 SS G_CDS: 2.11 Total: 2.12 kcal Total: -31.23 2.65 -28.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14797354_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.407 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds