Wall clock time and date at job start Tue Mar 9 2021 13:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34225 * 116.99777 * 2 1 4 4 O 1.20818 * 120.00023 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99800 * 180.02562 * 3 2 1 6 6 N 1.46893 * 109.47031 * 185.76933 * 5 3 2 7 7 C 1.46901 * 111.00177 * 62.75352 * 6 5 3 8 8 C 1.50700 * 109.46984 * 66.04801 * 7 6 5 9 9 C 1.38232 * 119.99844 * 269.72756 * 8 7 6 10 10 C 1.38238 * 120.00241 * 179.74244 * 9 8 7 11 11 C 1.38240 * 119.99404 * 0.53367 * 10 9 8 12 12 C 1.38230 * 120.00239 * 359.74049 * 11 10 9 13 13 C 1.38236 * 120.00113 * 89.99736 * 8 7 6 14 14 C 1.46901 * 111.00215 * 298.79757 * 6 5 3 15 15 H 1.09000 * 112.84711 * 75.49784 * 14 6 5 16 16 C 1.53781 * 113.61901 * 206.80484 * 14 6 5 17 17 C 1.53788 * 87.08001 * 139.98277 * 16 14 6 18 18 H 1.08996 * 113.68835 * 89.12591 * 17 16 14 19 19 N 1.46498 * 113.61103 * 220.02245 * 17 16 14 20 20 C 1.34780 * 119.99636 * 252.49376 * 19 17 16 21 21 O 1.21558 * 120.00193 * 0.02562 * 20 19 17 22 22 C 1.47834 * 119.99814 * 180.27343 * 20 19 17 23 23 C 1.39518 * 120.56204 * 359.45199 * 22 20 19 24 24 N 1.31700 * 120.57120 * 179.74489 * 23 22 20 25 25 C 1.31925 * 121.87426 * 0.54097 * 24 23 22 26 26 C 1.38351 * 121.08117 * 359.72408 * 25 24 23 27 27 C 1.50706 * 120.34846 * 180.02562 * 26 25 24 28 28 O 1.42897 * 109.46851 * 119.97641 * 27 26 25 29 29 Si 1.86299 * 109.47045 * 359.97438 * 27 26 25 30 30 C 1.38358 * 119.30530 * 359.97438 * 26 25 24 31 31 C 1.53779 * 113.61353 * 304.30846 * 14 6 5 32 32 H 1.08994 * 109.47160 * 60.00241 * 1 2 3 33 33 H 1.09005 * 109.46947 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47050 * 299.99982 * 1 2 3 35 35 H 1.09000 * 109.47139 * 65.76347 * 5 3 2 36 36 H 1.08997 * 109.46900 * 305.76856 * 5 3 2 37 37 H 1.08999 * 109.46715 * 186.04353 * 7 6 5 38 38 H 1.08997 * 109.47281 * 306.04429 * 7 6 5 39 39 H 1.08005 * 120.00000 * 0.02562 * 9 8 7 40 40 H 1.07998 * 120.00282 * 180.28942 * 10 9 8 41 41 H 1.08001 * 119.99513 * 179.76559 * 11 10 9 42 42 H 1.08000 * 120.00215 * 180.02562 * 12 11 10 43 43 H 1.07998 * 119.99953 * 0.02562 * 13 8 7 44 44 H 1.09003 * 113.60842 * 25.43508 * 16 14 6 45 45 H 1.08992 * 113.61388 * 254.53014 * 16 14 6 46 46 H 0.97000 * 120.00595 * 72.49665 * 19 17 16 47 47 H 1.08000 * 119.71464 * 0.02562 * 23 22 20 48 48 H 1.08002 * 119.45654 * 179.74063 * 25 24 23 49 49 H 1.08990 * 109.47415 * 239.97892 * 27 26 25 50 50 H 0.96704 * 114.00207 * 180.02562 * 28 27 26 51 51 H 1.48498 * 110.00159 * 298.68345 * 29 27 26 52 52 H 1.48508 * 109.99991 * 59.99949 * 29 27 26 53 53 H 1.08000 * 120.85658 * 180.02562 * 30 26 25 54 54 H 1.08998 * 113.61768 * 105.47009 * 31 14 6 55 55 H 1.08992 * 113.61525 * 334.55888 * 31 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9833 2.6765 0.1388 7 6 3.5375 3.2332 1.4231 8 6 4.2529 2.5327 2.5494 9 6 3.7026 1.3998 3.1191 10 6 4.3613 0.7542 4.1488 11 6 5.5650 1.2479 4.6161 12 6 6.1125 2.3841 4.0503 13 6 5.4566 3.0263 3.0167 14 6 3.4924 3.4859 -0.9846 15 1 2.4278 3.7083 -0.9126 16 6 4.3623 4.7186 -1.2822 17 6 4.1439 4.4149 -2.7739 18 1 3.2580 4.8922 -3.1927 19 7 5.3404 4.6157 -3.5949 20 6 5.4150 5.6706 -4.4305 21 8 4.4896 6.4556 -4.5025 22 6 6.6199 5.8699 -5.2636 23 6 7.6914 4.9797 -5.1857 24 7 8.7628 5.1543 -5.9314 25 6 8.8731 6.1705 -6.7655 26 6 7.8568 7.1001 -6.8970 27 6 8.0000 8.2543 -7.8553 28 8 6.9555 8.1974 -8.8289 29 14 9.6521 8.1504 -8.7101 30 6 6.7072 6.9583 -6.1402 31 6 3.9181 2.9506 -2.3619 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8899 35 1 3.9509 0.8728 -0.9379 36 1 3.9609 0.6939 0.8330 37 1 3.7645 4.2988 1.4555 38 1 2.4626 3.0872 1.5288 39 1 2.7601 1.0165 2.7567 40 1 3.9336 -0.1336 4.5907 41 1 6.0777 0.7457 5.4231 42 1 7.0531 2.7695 4.4151 43 1 5.8842 3.9142 2.5748 44 1 5.3984 4.6095 -0.9615 45 1 3.9144 5.6577 -0.9576 46 1 6.0790 3.9896 -3.5373 47 1 7.6398 4.1377 -4.5115 48 1 9.7712 6.2783 -7.3554 49 1 7.9338 9.1932 -7.3058 50 1 6.9855 8.9116 -9.4802 51 1 10.7473 8.2404 -7.7113 52 1 9.7550 6.8745 -9.4631 53 1 5.8983 7.6690 -6.2233 54 1 3.1116 2.4626 -2.9090 55 1 4.8327 2.3582 -2.3365 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928150_13287814.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:01 Heat of formation + Delta-G solvation = -33.236325 kcal Electronic energy + Delta-G solvation = -38937.461178 eV Core-core repulsion = 33907.867746 eV Total energy + Delta-G solvation = -5029.593431 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.188 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.25374 -41.95218 -40.84156 -40.23842 -39.52342 -37.86990 -37.84424 -36.52966 -34.70316 -33.96048 -33.04960 -32.38874 -31.79343 -30.05883 -28.12510 -27.35068 -27.01456 -26.51355 -25.71098 -23.97994 -23.51859 -23.45713 -22.46248 -21.76571 -21.55296 -20.75318 -19.09326 -18.76620 -18.61611 -18.32420 -18.14549 -17.88795 -17.70978 -17.40652 -17.18201 -16.52184 -16.41985 -16.37365 -16.20107 -15.97327 -15.88612 -15.45037 -15.34207 -15.06154 -14.79643 -14.66525 -14.54252 -14.41317 -14.27641 -14.26620 -13.89823 -13.81848 -13.57854 -13.45442 -13.26323 -13.12117 -12.88566 -12.81706 -12.66043 -12.52940 -12.25805 -12.16762 -12.02211 -11.93161 -11.75793 -11.72005 -11.52932 -11.45880 -11.19001 -10.83365 -10.62917 -10.23918 -10.13755 -9.85167 -9.78600 -9.47055 -4.96982 -0.72921 -0.14008 0.37716 0.48982 1.03049 1.22589 1.53188 1.64338 1.71329 1.85558 1.92569 2.48487 2.59721 2.93184 3.02418 3.18110 3.38341 3.38745 3.44277 3.57693 3.62041 3.69506 3.71339 3.73318 3.82980 3.89351 3.95407 4.02833 4.10360 4.13515 4.15289 4.20480 4.23964 4.25870 4.34380 4.44102 4.44504 4.55746 4.60219 4.63910 4.65509 4.69791 4.72159 4.74758 4.77003 4.79461 4.89795 4.93600 5.03896 5.09670 5.14231 5.17323 5.33652 5.41289 5.52707 5.59045 5.63557 5.73913 5.87094 6.09898 6.31062 6.47837 6.61263 6.84402 6.97116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.429 3.571 4 O -0.531 6.531 5 C 0.054 3.946 6 N -0.479 5.479 7 C 0.084 3.916 8 C -0.087 4.087 9 C -0.126 4.126 10 C -0.126 4.126 11 C -0.127 4.127 12 C -0.126 4.126 13 C -0.105 4.105 14 C 0.046 3.954 15 H 0.079 0.921 16 C -0.128 4.128 17 C 0.123 3.877 18 H 0.096 0.904 19 N -0.693 5.693 20 C 0.568 3.432 21 O -0.571 6.571 22 C -0.192 4.192 23 C 0.145 3.855 24 N -0.495 5.495 25 C 0.109 3.891 26 C -0.141 4.141 27 C -0.081 4.081 28 O -0.565 6.565 29 Si 0.781 3.219 30 C 0.001 3.999 31 C -0.126 4.126 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.058 0.942 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.111 0.889 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.106 0.894 45 H 0.062 0.938 46 H 0.417 0.583 47 H 0.198 0.802 48 H 0.158 0.842 49 H 0.101 0.899 50 H 0.407 0.593 51 H -0.278 1.278 52 H -0.290 1.290 53 H 0.146 0.854 54 H 0.075 0.925 55 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.648 -1.558 -0.178 3.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.272 3.728 4 O -0.421 6.421 5 C -0.075 4.075 6 N -0.201 5.201 7 C -0.043 4.043 8 C -0.087 4.087 9 C -0.145 4.145 10 C -0.144 4.144 11 C -0.145 4.145 12 C -0.144 4.144 13 C -0.123 4.123 14 C -0.062 4.062 15 H 0.097 0.903 16 C -0.167 4.167 17 C 0.018 3.982 18 H 0.115 0.885 19 N -0.344 5.344 20 C 0.355 3.645 21 O -0.451 6.451 22 C -0.197 4.197 23 C -0.014 4.014 24 N -0.203 5.203 25 C -0.047 4.047 26 C -0.143 4.143 27 C -0.191 4.191 28 O -0.376 6.376 29 Si 0.685 3.315 30 C -0.025 4.025 31 C -0.164 4.164 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.076 0.924 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.124 0.876 45 H 0.081 0.919 46 H 0.256 0.744 47 H 0.215 0.785 48 H 0.175 0.825 49 H 0.118 0.882 50 H 0.259 0.741 51 H -0.205 1.205 52 H -0.218 1.218 53 H 0.164 0.836 54 H 0.094 0.906 55 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.527 -2.269 0.084 5.064 hybrid contribution -2.248 0.338 0.515 2.331 sum 2.279 -1.931 0.599 3.047 Atomic orbital electron populations 1.23455 0.75468 1.05380 1.02168 1.86559 1.24487 1.33703 1.83388 1.25934 0.94303 0.81271 0.71253 1.90630 1.68127 1.36728 1.46648 1.22458 0.83956 0.92972 1.08132 1.62755 1.55536 1.00153 1.01645 1.21165 0.97313 0.99217 0.86625 1.19765 0.95882 0.96055 0.97026 1.21088 0.99805 0.95973 0.97614 1.21356 0.95733 1.00439 0.96837 1.21462 0.96045 0.96663 1.00316 1.21453 1.00605 0.95892 0.96452 1.21193 0.94309 1.00289 0.96547 1.23144 0.98218 0.95089 0.89755 0.90302 1.23464 1.01796 0.97085 0.94396 1.22268 0.88300 0.97706 0.89929 0.88545 1.45696 1.20616 1.27029 1.41101 1.18119 0.85787 0.81306 0.79315 1.90797 1.39991 1.45948 1.68405 1.21084 0.97140 0.99697 1.01798 1.23506 0.86408 0.97003 0.94476 1.67739 1.25540 1.20549 1.06435 1.22877 0.97918 0.89230 0.94633 1.20713 0.95403 0.98783 0.99442 1.24855 1.03854 0.97333 0.93044 1.86436 1.51086 1.56099 1.43956 0.93867 0.71659 0.84253 0.81739 1.21697 0.96449 0.94951 0.89428 1.23463 1.03607 0.95362 0.93969 0.92221 0.85617 0.92354 0.83917 0.85621 0.89316 0.93309 0.87105 0.84797 0.84586 0.84549 0.85084 0.87563 0.91938 0.74382 0.78498 0.82520 0.88151 0.74073 1.20464 1.21753 0.83627 0.90636 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.37 -0.55 10.57 -51.37 -0.54 -1.09 16 3 C 0.43 0.85 7.02 71.24 0.50 1.35 16 4 O -0.53 -3.77 11.63 21.99 0.26 -3.52 16 5 C 0.05 -0.15 5.36 85.56 0.46 0.30 16 6 N -0.48 0.78 4.66 -877.00 -4.09 -3.31 16 7 C 0.08 0.11 4.80 85.56 0.41 0.52 16 8 C -0.09 -0.12 4.88 -19.87 -0.10 -0.21 16 9 C -0.13 -0.17 7.93 22.27 0.18 0.00 16 10 C -0.13 -0.04 10.05 22.27 0.22 0.18 16 11 C -0.13 0.02 10.05 22.27 0.22 0.24 16 12 C -0.13 0.01 10.05 22.27 0.22 0.24 16 13 C -0.10 -0.06 9.70 22.27 0.22 0.16 16 14 C 0.05 -0.04 2.39 45.44 0.11 0.07 16 15 H 0.08 0.36 6.06 -2.39 -0.01 0.34 16 16 C -0.13 0.13 7.48 31.12 0.23 0.37 16 17 C 0.12 -0.04 4.24 45.52 0.19 0.15 16 18 H 0.10 0.48 7.46 -2.39 -0.02 0.46 16 19 N -0.69 1.00 5.31 -442.89 -2.35 -1.36 16 20 C 0.57 3.33 7.78 86.78 0.68 4.00 16 21 O -0.57 -8.20 16.02 -3.90 -0.06 -8.26 16 22 C -0.19 -0.85 5.89 -20.00 -0.12 -0.97 16 23 C 0.14 0.17 10.71 85.02 0.91 1.08 16 24 N -0.49 -2.77 10.35 -194.75 -2.01 -4.79 16 25 C 0.11 0.59 9.84 84.71 0.83 1.42 16 26 C -0.14 -0.63 5.42 -19.81 -0.11 -0.74 16 27 C -0.08 0.12 2.82 71.24 0.20 0.32 16 28 O -0.57 0.36 12.75 -148.98 -1.90 -1.54 16 29 Si 0.78 -3.22 29.82 68.60 2.05 -1.18 16 30 C 0.00 0.01 9.31 22.73 0.21 0.22 16 31 C -0.13 0.54 6.33 31.12 0.20 0.74 16 32 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 33 H 0.13 -0.83 8.14 -2.38 -0.02 -0.85 16 34 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 35 H 0.14 -1.04 6.98 -2.39 -0.02 -1.06 16 36 H 0.13 -0.41 5.99 -2.39 -0.01 -0.42 16 37 H 0.09 0.10 7.87 -2.39 -0.02 0.08 16 38 H 0.05 0.26 5.65 -2.39 -0.01 0.24 16 39 H 0.11 0.12 7.80 -2.91 -0.02 0.09 16 40 H 0.13 -0.38 8.06 -2.91 -0.02 -0.40 16 41 H 0.14 -0.49 8.06 -2.91 -0.02 -0.52 16 42 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 43 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 44 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.42 -3.36 6.79 -92.71 -0.63 -3.99 16 47 H 0.20 -1.46 6.42 -2.91 -0.02 -1.48 16 48 H 0.16 0.53 4.88 -2.91 -0.01 0.51 16 49 H 0.10 -0.55 7.96 -2.39 -0.02 -0.57 16 50 H 0.41 -4.64 8.74 -74.05 -0.65 -5.29 16 51 H -0.28 -0.12 7.11 99.48 0.71 0.59 16 52 H -0.29 -0.91 7.11 99.48 0.71 -0.20 16 53 H 0.15 1.08 7.74 -2.91 -0.02 1.06 16 54 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 55 H 0.12 -1.04 7.85 -2.39 -0.02 -1.06 16 Total: 0.00 -26.20 447.21 -2.07 -28.27 By element: Atomic # 1 Polarization: -13.55 SS G_CDS: -0.29 Total: -13.84 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 6.87 Total: 10.60 kcal Atomic # 7 Polarization: -0.99 SS G_CDS: -8.46 Total: -9.45 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -2.25 Total: -14.41 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.05 Total: -1.18 kcal Total: -26.20 -2.07 -28.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928150_13287814.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.965 kcal (2) G-P(sol) polarization free energy of solvation -26.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds