Wall clock time and date at job start Tue Mar 9 2021 13:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34233 * 116.99692 * 2 1 4 4 O 1.20824 * 119.99932 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00027 * 180.02562 * 3 2 1 6 6 N 1.46894 * 109.47156 * 185.82923 * 5 3 2 7 7 C 1.46897 * 110.99770 * 62.67670 * 6 5 3 8 8 C 1.50705 * 109.47383 * 66.04662 * 7 6 5 9 9 C 1.38233 * 119.99773 * 269.72755 * 8 7 6 10 10 C 1.38231 * 119.99693 * 179.78306 * 9 8 7 11 11 C 1.38238 * 120.00132 * 0.43955 * 10 9 8 12 12 C 1.38233 * 119.99953 * 359.81287 * 11 10 9 13 13 C 1.38236 * 119.99742 * 89.99479 * 8 7 6 14 14 C 1.46903 * 111.00208 * 298.72369 * 6 5 3 15 15 H 1.09004 * 112.84812 * 74.67352 * 14 6 5 16 16 C 1.53781 * 113.68961 * 205.94574 * 14 6 5 17 17 C 1.53780 * 87.08005 * 139.99251 * 16 14 6 18 18 H 1.09002 * 113.61789 * 89.11321 * 17 16 14 19 19 N 1.46502 * 113.69370 * 220.01156 * 17 16 14 20 20 C 1.34775 * 119.99490 * 252.53677 * 19 17 16 21 21 O 1.21616 * 120.00163 * 359.97438 * 20 19 17 22 22 C 1.47383 * 119.99724 * 179.97438 * 20 19 17 23 23 C 1.36412 * 127.19096 * 0.02562 * 22 20 19 24 24 O 1.33662 * 108.39604 * 179.97438 * 23 22 20 25 25 C 1.34212 * 110.90723 * 0.02562 * 24 23 22 26 26 C 1.50699 * 125.43568 * 180.02562 * 25 24 23 27 27 O 1.42901 * 109.47479 * 119.97579 * 26 25 24 28 28 Si 1.86294 * 109.47288 * 359.96691 * 26 25 24 29 29 C 1.34185 * 109.12619 * 359.74661 * 25 24 23 30 30 C 1.53781 * 113.61351 * 303.48220 * 14 6 5 31 31 H 1.08997 * 109.46735 * 299.99319 * 1 2 3 32 32 H 1.08997 * 109.47105 * 59.99714 * 1 2 3 33 33 H 1.08999 * 109.46491 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46771 * 65.82716 * 5 3 2 35 35 H 1.09002 * 109.46981 * 305.83582 * 5 3 2 36 36 H 1.09000 * 109.46882 * 186.04228 * 7 6 5 37 37 H 1.08996 * 109.47775 * 306.04315 * 7 6 5 38 38 H 1.07995 * 120.00262 * 359.97438 * 9 8 7 39 39 H 1.08004 * 120.00316 * 180.27211 * 10 9 8 40 40 H 1.08001 * 120.00077 * 179.82850 * 11 10 9 41 41 H 1.08002 * 120.00104 * 179.97438 * 12 11 10 42 42 H 1.07995 * 120.00131 * 359.97438 * 13 8 7 43 43 H 1.09001 * 113.61624 * 254.54040 * 16 14 6 44 44 H 1.08997 * 113.61206 * 25.44502 * 16 14 6 45 45 H 0.96993 * 120.00262 * 72.52912 * 19 17 16 46 46 H 1.07996 * 125.80258 * 359.96438 * 23 22 20 47 47 H 1.09010 * 109.46533 * 239.97148 * 26 25 24 48 48 H 0.96698 * 113.99284 * 299.99247 * 27 26 25 49 49 H 1.48496 * 109.99650 * 58.68504 * 28 26 25 50 50 H 1.48502 * 109.99977 * 180.02562 * 28 26 25 51 51 H 1.07998 * 127.02615 * 180.27089 * 29 25 24 52 52 H 1.09001 * 113.61313 * 334.48457 * 30 14 6 53 53 H 1.09001 * 113.61242 * 105.38455 * 30 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2750 -0.0006 6 7 3.9832 2.6765 0.1402 7 6 3.5360 3.2323 1.4243 8 6 4.2498 2.5310 2.5512 9 6 3.6986 1.3978 3.1194 10 6 4.3556 0.7520 4.1500 11 6 5.5592 1.2446 4.6185 12 6 6.1078 2.3808 4.0538 13 6 5.4530 3.0242 3.0203 14 6 3.4938 3.4868 -0.9832 15 1 2.4261 3.6972 -0.9197 16 6 4.3512 4.7314 -1.2670 17 6 4.1493 4.4328 -2.7620 18 1 3.2609 4.9018 -3.1849 19 7 5.3492 4.6520 -3.5734 20 6 5.4173 5.7121 -4.4028 21 8 4.4826 6.4864 -4.4780 22 6 6.6247 5.9329 -5.2187 23 6 7.7505 5.1632 -5.2506 24 8 8.6084 5.7065 -6.1198 25 6 8.0932 6.8164 -6.6710 26 6 8.7813 7.6850 -7.6924 27 8 7.9993 7.7256 -8.8877 28 14 10.4634 6.9811 -8.0741 29 6 6.8653 7.0259 -6.1722 30 6 3.9378 2.9637 -2.3594 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 3.9508 0.8740 -0.9384 35 1 3.9610 0.6930 0.8323 36 1 3.7630 4.2978 1.4578 37 1 2.4609 3.0864 1.5287 38 1 2.7563 1.0152 2.7561 39 1 3.9272 -0.1360 4.5910 40 1 6.0712 0.7416 5.4256 41 1 7.0480 2.7660 4.4201 42 1 5.8816 3.9118 2.5789 43 1 3.8891 5.6635 -0.9416 44 1 5.3857 4.6332 -0.9380 45 1 6.0946 4.0342 -3.5136 46 1 7.9199 4.2673 -4.6719 47 1 8.8913 8.6944 -7.2957 48 1 7.8604 6.8603 -9.2963 49 1 10.3290 5.5935 -8.5856 50 1 11.1525 7.8291 -9.0798 51 1 6.1919 7.8332 -6.4194 52 1 4.8593 2.3823 -2.3290 53 1 3.1419 2.4687 -2.9159 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928150_13456056.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:49 Heat of formation + Delta-G solvation = -56.303772 kcal Electronic energy + Delta-G solvation = -37487.891946 eV Core-core repulsion = 32487.805713 eV Total energy + Delta-G solvation = -5000.086232 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.176 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.70109 -42.16629 -40.99383 -40.23293 -39.48446 -38.16263 -37.81747 -36.48111 -34.60374 -33.67069 -32.46526 -31.81078 -31.65448 -30.02977 -28.10941 -27.06381 -26.49418 -26.39647 -25.15405 -23.46050 -23.31558 -22.42867 -22.29882 -21.53003 -21.27536 -20.50295 -19.33217 -18.75723 -18.15399 -17.87808 -17.74010 -17.59981 -17.54177 -17.28538 -17.16869 -16.42490 -16.38219 -16.33112 -15.99319 -15.93918 -15.84091 -15.64087 -15.25629 -14.85026 -14.57052 -14.52780 -14.24625 -14.21002 -13.98078 -13.87434 -13.58961 -13.54626 -13.42032 -13.22395 -13.10829 -12.94478 -12.86745 -12.79202 -12.47876 -12.23535 -12.13414 -12.00741 -11.91093 -11.73573 -11.67104 -11.49399 -11.20513 -10.97578 -10.76544 -10.14186 -9.83034 -9.76561 -9.76078 -9.45193 -4.90179 0.28086 0.40011 0.51388 0.81694 1.04445 1.19984 1.54701 1.72756 1.76468 1.96799 2.03529 2.24216 2.63293 3.04671 3.21337 3.41674 3.43500 3.52762 3.57091 3.71986 3.76182 3.85804 3.91951 3.97157 4.01457 4.12580 4.15893 4.21222 4.24632 4.27865 4.34335 4.37043 4.43502 4.47767 4.52889 4.61228 4.62534 4.65092 4.69481 4.72659 4.77779 4.79891 4.91267 4.93979 4.97774 5.08017 5.12413 5.13933 5.16834 5.35866 5.48084 5.55217 5.61378 5.65972 5.76062 5.84191 5.89216 6.12262 6.34993 6.50109 6.62628 7.16426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.428 3.572 4 O -0.532 6.532 5 C 0.055 3.945 6 N -0.477 5.477 7 C 0.083 3.917 8 C -0.087 4.087 9 C -0.127 4.127 10 C -0.126 4.126 11 C -0.127 4.127 12 C -0.125 4.125 13 C -0.104 4.104 14 C 0.045 3.955 15 H 0.076 0.924 16 C -0.128 4.128 17 C 0.124 3.876 18 H 0.088 0.912 19 N -0.694 5.694 20 C 0.586 3.414 21 O -0.590 6.590 22 C -0.270 4.270 23 C 0.070 3.930 24 O -0.163 6.163 25 C -0.050 4.050 26 C -0.047 4.047 27 O -0.540 6.540 28 Si 0.795 3.205 29 C -0.153 4.153 30 C -0.122 4.122 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.126 0.874 34 H 0.145 0.855 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.057 0.943 44 H 0.109 0.891 45 H 0.419 0.581 46 H 0.265 0.735 47 H 0.147 0.853 48 H 0.390 0.610 49 H -0.286 1.286 50 H -0.289 1.289 51 H 0.141 0.859 52 H 0.124 0.876 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.633 -7.696 3.326 10.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.272 3.728 4 O -0.422 6.422 5 C -0.075 4.075 6 N -0.199 5.199 7 C -0.044 4.044 8 C -0.087 4.087 9 C -0.145 4.145 10 C -0.144 4.144 11 C -0.145 4.145 12 C -0.143 4.143 13 C -0.123 4.123 14 C -0.063 4.063 15 H 0.094 0.906 16 C -0.167 4.167 17 C 0.018 3.982 18 H 0.106 0.894 19 N -0.345 5.345 20 C 0.376 3.624 21 O -0.471 6.471 22 C -0.274 4.274 23 C -0.001 4.001 24 O -0.059 6.059 25 C -0.098 4.098 26 C -0.155 4.155 27 O -0.348 6.348 28 Si 0.697 3.303 29 C -0.173 4.173 30 C -0.161 4.161 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.162 0.838 35 H 0.144 0.856 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.128 0.872 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.076 0.924 44 H 0.127 0.873 45 H 0.257 0.743 46 H 0.281 0.719 47 H 0.165 0.835 48 H 0.241 0.759 49 H -0.212 1.212 50 H -0.216 1.216 51 H 0.159 0.841 52 H 0.143 0.857 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.034 -6.643 2.695 10.044 hybrid contribution -2.773 -0.157 -0.531 2.828 sum 4.262 -6.800 2.163 8.312 Atomic orbital electron populations 1.23449 0.75527 1.05370 1.02123 1.86559 1.24434 1.33715 1.83399 1.25989 0.94386 0.81242 0.71225 1.90636 1.68171 1.36773 1.46669 1.22470 0.83811 0.92979 1.08202 1.62760 1.55417 1.00128 1.01551 1.21164 0.97267 0.99222 0.86722 1.19759 0.95924 0.96016 0.97013 1.21078 0.99782 0.96017 0.97651 1.21349 0.95778 1.00444 0.96822 1.21463 0.96006 0.96705 1.00310 1.21458 1.00624 0.95820 0.96413 1.21197 0.94258 1.00278 0.96527 1.23145 0.98128 0.95123 0.89945 0.90641 1.23459 1.01912 0.96745 0.94591 1.22173 0.88419 0.97511 0.90112 0.89351 1.45554 1.19876 1.27184 1.41904 1.17585 0.85481 0.80728 0.78627 1.90791 1.40332 1.47384 1.68640 1.21463 0.97656 1.01786 1.06532 1.25344 0.85755 0.98094 0.90894 1.83720 1.42607 1.33762 1.45792 1.22674 0.94917 0.90159 1.02058 1.24726 1.04875 1.03140 0.82772 1.86651 1.73350 1.36244 1.38598 0.93430 0.74731 0.75684 0.86452 1.22554 0.96877 1.00114 0.97801 1.23442 1.03633 0.95216 0.93775 0.92402 0.92283 0.85591 0.83771 0.85556 0.89374 0.93461 0.87207 0.84867 0.84588 0.84451 0.84980 0.92420 0.87281 0.74278 0.71906 0.83534 0.75947 1.21180 1.21561 0.84086 0.85741 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.37 -0.41 10.57 -51.45 -0.54 -0.95 16 3 C 0.43 0.70 7.02 71.24 0.50 1.20 16 4 O -0.53 -3.77 11.62 21.97 0.26 -3.52 16 5 C 0.05 -0.20 5.37 85.56 0.46 0.26 16 6 N -0.48 1.11 4.66 -876.97 -4.09 -2.98 16 7 C 0.08 0.07 4.80 85.56 0.41 0.49 16 8 C -0.09 -0.06 4.88 -19.86 -0.10 -0.16 16 9 C -0.13 -0.10 7.93 22.27 0.18 0.07 16 10 C -0.13 0.03 10.05 22.27 0.22 0.26 16 11 C -0.13 0.12 10.05 22.27 0.22 0.34 16 12 C -0.13 0.13 10.05 22.27 0.22 0.36 16 13 C -0.10 0.03 9.70 22.27 0.22 0.25 16 14 C 0.05 -0.05 2.40 45.44 0.11 0.06 16 15 H 0.08 0.37 6.04 -2.38 -0.01 0.35 16 16 C -0.13 0.14 7.44 31.12 0.23 0.38 16 17 C 0.12 -0.04 4.24 45.52 0.19 0.15 16 18 H 0.09 0.55 7.46 -2.39 -0.02 0.53 16 19 N -0.69 1.73 5.35 -443.33 -2.37 -0.64 16 20 C 0.59 3.63 7.81 86.65 0.68 4.30 16 21 O -0.59 -10.10 16.58 -4.08 -0.07 -10.17 16 22 C -0.27 -0.63 6.31 -18.99 -0.12 -0.75 16 23 C 0.07 -0.44 11.61 67.39 0.78 0.34 16 24 O -0.16 0.49 8.89 4.40 0.04 0.53 16 25 C -0.05 -0.03 6.20 24.76 0.15 0.13 16 26 C -0.05 0.07 2.97 71.24 0.21 0.28 16 27 O -0.54 -1.10 12.86 -148.98 -1.92 -3.01 16 28 Si 0.79 -2.85 32.08 68.60 2.20 -0.65 16 29 C -0.15 -0.83 10.87 23.65 0.26 -0.58 16 30 C -0.12 0.62 6.34 31.12 0.20 0.82 16 31 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 32 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 33 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 34 H 0.14 -1.22 7.03 -2.39 -0.02 -1.23 16 35 H 0.13 -0.52 6.00 -2.39 -0.01 -0.54 16 36 H 0.09 0.08 7.84 -2.39 -0.02 0.06 16 37 H 0.05 0.24 5.65 -2.39 -0.01 0.23 16 38 H 0.11 0.08 7.79 -2.91 -0.02 0.05 16 39 H 0.13 -0.44 8.06 -2.91 -0.02 -0.47 16 40 H 0.14 -0.60 8.06 -2.91 -0.02 -0.62 16 41 H 0.14 -0.63 8.06 -2.91 -0.02 -0.65 16 42 H 0.13 -0.36 8.06 -2.91 -0.02 -0.39 16 43 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H 0.42 -4.63 7.70 -92.71 -0.71 -5.34 16 46 H 0.27 -4.76 7.47 -2.91 -0.02 -4.78 16 47 H 0.15 -0.56 7.96 -2.38 -0.02 -0.58 16 48 H 0.39 -1.47 8.70 -74.06 -0.64 -2.12 16 49 H -0.29 -0.36 7.11 99.48 0.71 0.35 16 50 H -0.29 -0.84 7.11 99.48 0.71 -0.13 16 51 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 52 H 0.12 -1.28 7.89 -2.39 -0.02 -1.30 16 53 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 Total: 0.00 -28.38 440.10 -0.62 -29.00 By element: Atomic # 1 Polarization: -16.60 SS G_CDS: -0.36 Total: -16.95 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 6.23 Total: 9.35 kcal Atomic # 7 Polarization: 2.84 SS G_CDS: -6.46 Total: -3.62 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -2.23 Total: -17.12 kcal Atomic # 14 Polarization: -2.85 SS G_CDS: 2.20 Total: -0.65 kcal Total: -28.38 -0.62 -29.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928150_13456056.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.305 kcal (2) G-P(sol) polarization free energy of solvation -28.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds