Wall clock time and date at job start Tue Mar 9 2021 13:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86309 * 109.46808 * 2 1 4 4 C 1.50694 * 109.47441 * 119.99817 * 2 1 3 5 5 C 1.38415 * 119.89374 * 245.00069 * 4 2 1 6 6 C 1.38244 * 120.34150 * 180.02562 * 5 4 2 7 7 C 1.38276 * 120.11683 * 0.04601 * 6 5 4 8 8 F 1.35104 * 120.11150 * 179.97438 * 7 6 5 9 9 C 1.39871 * 119.78189 * 0.25473 * 7 6 5 10 10 C 1.47687 * 120.16958 * 179.70573 * 9 7 6 11 11 O 1.21577 * 120.00081 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00024 * 180.02562 * 10 9 7 13 13 C 1.46504 * 119.99996 * 180.02562 * 12 10 9 14 14 H 1.08994 * 112.84837 * 25.32351 * 13 12 10 15 15 C 1.53783 * 113.61449 * 156.52607 * 13 12 10 16 16 C 1.53789 * 87.07847 * 139.97792 * 15 13 12 17 17 H 1.08997 * 113.61392 * 89.20253 * 16 15 13 18 18 C 1.52999 * 113.61009 * 220.01717 * 16 15 13 19 19 N 1.46504 * 109.46869 * 185.00323 * 18 16 15 20 20 C 1.35312 * 125.86745 * 124.71812 * 19 18 16 21 21 C 1.35355 * 106.17214 * 179.90437 * 20 19 18 22 22 N 1.33775 * 106.49681 * 0.34963 * 21 20 19 23 23 N 1.28632 * 108.88713 * 359.77310 * 22 21 20 24 24 C 1.53787 * 113.61111 * 254.13370 * 13 12 10 25 25 C 1.37899 * 119.89079 * 65.02554 * 4 2 1 26 26 H 0.96697 * 113.99919 * 299.99389 * 1 2 3 27 27 H 1.08995 * 109.47133 * 240.00679 * 2 1 3 28 28 H 1.48492 * 109.99923 * 178.68441 * 3 2 1 29 29 H 1.48502 * 109.99970 * 300.00302 * 3 2 1 30 30 H 1.08004 * 119.83077 * 0.02562 * 5 4 2 31 31 H 1.07995 * 119.94591 * 180.02562 * 6 5 4 32 32 H 0.96995 * 120.00151 * 359.97438 * 12 10 9 33 33 H 1.08992 * 113.61510 * 254.52379 * 15 13 12 34 34 H 1.09000 * 113.61419 * 25.43049 * 15 13 12 35 35 H 1.08997 * 109.47550 * 304.99736 * 18 16 15 36 36 H 1.09001 * 109.47048 * 65.00264 * 18 16 15 37 37 H 1.07994 * 126.91351 * 0.02562 * 20 19 18 38 38 H 1.07994 * 126.75544 * 180.12228 * 21 20 19 39 39 H 1.09007 * 113.60967 * 334.56512 * 24 13 12 40 40 H 1.08994 * 113.61395 * 105.46594 * 24 13 12 41 41 H 1.08007 * 120.06026 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7103 1.2304 5 6 2.6395 -0.0091 2.1910 6 6 3.1052 -0.6516 3.3231 7 6 2.8665 -2.0018 3.5022 8 9 3.3220 -2.6297 4.6084 9 6 2.1569 -2.7166 2.5317 10 6 1.9028 -4.1603 2.7113 11 8 2.3110 -4.7306 3.7044 12 7 1.2191 -4.8459 1.7737 13 6 0.9665 -6.2780 1.9521 14 1 0.9669 -6.5806 2.9992 15 6 -0.2489 -6.7921 1.1626 16 6 0.5830 -8.0479 0.8525 17 1 0.4780 -8.8362 1.5979 18 6 0.4120 -8.5580 -0.5798 19 7 1.1453 -9.8160 -0.7409 20 6 0.6241 -10.9877 -1.1727 21 6 1.6444 -11.8773 -1.1715 22 7 2.7237 -11.2169 -0.7374 23 7 2.3948 -9.9980 -0.4909 24 6 1.8342 -7.1733 1.0518 25 6 1.6846 -2.0570 1.3954 26 1 -0.3933 0.4416 0.7651 27 1 1.7924 -0.5137 -0.8900 28 1 3.5345 1.7705 0.0320 29 1 1.5614 2.4680 -1.2085 30 1 2.8293 1.0455 2.0555 31 1 3.6566 -0.0982 4.0687 32 1 0.8937 -4.3911 0.9812 33 1 -1.1219 -6.9894 1.7845 34 1 -0.4819 -6.1942 0.2815 35 1 -0.6458 -8.7257 -0.7820 36 1 0.8025 -7.8177 -1.2781 37 1 -0.3993 -11.1750 -1.4620 38 1 1.5958 -12.9167 -1.4604 39 1 2.1717 -6.6797 0.1404 40 1 2.6403 -7.6777 1.5846 41 1 1.1325 -2.6019 0.6439 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_12335834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:24:48 Heat of formation + Delta-G solvation = 47.886670 kcal Electronic energy + Delta-G solvation = -27542.554313 eV Core-core repulsion = 23342.028274 eV Total energy + Delta-G solvation = -4200.526039 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.03791 -44.16479 -41.58500 -40.44448 -39.40039 -37.42385 -35.86262 -34.55584 -32.57891 -32.25024 -31.93684 -29.50870 -26.79127 -26.62224 -25.95412 -24.50513 -23.55686 -23.07323 -22.13472 -21.70347 -20.80212 -19.23357 -18.63878 -18.35154 -18.27278 -17.53451 -17.21552 -16.98184 -16.86309 -16.23612 -16.21474 -15.98151 -15.86259 -15.71888 -15.65835 -15.26151 -14.83954 -14.52616 -14.38235 -14.35136 -13.75914 -13.68759 -13.50749 -13.29214 -13.11756 -12.85299 -12.63248 -12.33538 -12.17099 -12.03753 -11.94262 -11.87869 -11.46442 -11.19554 -11.01054 -10.46078 -10.42545 -10.32312 -10.12460 -9.84077 -4.96450 -0.51876 -0.04627 0.69239 1.31890 1.50917 1.57246 1.63088 1.67834 1.94674 2.02933 2.45385 3.03539 3.26098 3.34601 3.38695 3.44870 3.55329 3.60515 3.62654 3.66784 3.73523 3.97905 4.01081 4.09188 4.13926 4.23464 4.33395 4.35216 4.43070 4.56148 4.64035 4.65725 4.73698 4.76538 4.82451 4.83835 4.92372 4.93578 5.01296 5.09482 5.12878 5.27653 5.45298 5.58260 5.72634 6.33983 6.80428 7.02890 7.54978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.063 4.063 3 Si 0.767 3.233 4 C -0.134 4.134 5 C -0.050 4.050 6 C -0.153 4.153 7 C 0.130 3.870 8 F -0.139 7.139 9 C -0.190 4.190 10 C 0.552 3.448 11 O -0.576 6.576 12 N -0.696 5.696 13 C 0.113 3.887 14 H 0.089 0.911 15 C -0.107 4.107 16 C -0.113 4.113 17 H 0.087 0.913 18 C 0.119 3.881 19 N -0.287 5.287 20 C -0.034 4.034 21 C -0.074 4.074 22 N -0.326 5.326 23 N -0.123 5.123 24 C -0.143 4.143 25 C -0.023 4.023 26 H 0.398 0.602 27 H 0.120 0.880 28 H -0.285 1.285 29 H -0.302 1.302 30 H 0.169 0.831 31 H 0.167 0.833 32 H 0.417 0.583 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.152 0.848 36 H 0.115 0.885 37 H 0.237 0.763 38 H 0.209 0.791 39 H 0.097 0.903 40 H 0.043 0.957 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.078 6.236 -5.072 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.174 4.174 3 Si 0.674 3.326 4 C -0.135 4.135 5 C -0.067 4.067 6 C -0.171 4.171 7 C 0.110 3.890 8 F -0.117 7.117 9 C -0.194 4.194 10 C 0.340 3.660 11 O -0.456 6.456 12 N -0.348 5.348 13 C 0.008 3.992 14 H 0.107 0.893 15 C -0.145 4.145 16 C -0.133 4.133 17 H 0.106 0.894 18 C 0.000 4.000 19 N -0.081 5.081 20 C -0.185 4.185 21 C -0.232 4.232 22 N -0.191 5.191 23 N -0.102 5.102 24 C -0.182 4.182 25 C -0.042 4.042 26 H 0.248 0.752 27 H 0.137 0.863 28 H -0.212 1.212 29 H -0.230 1.230 30 H 0.186 0.814 31 H 0.184 0.816 32 H 0.256 0.744 33 H 0.114 0.886 34 H 0.144 0.856 35 H 0.170 0.830 36 H 0.133 0.867 37 H 0.254 0.746 38 H 0.226 0.774 39 H 0.116 0.884 40 H 0.062 0.938 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.914 6.763 -4.806 11.466 hybrid contribution -0.319 -1.366 -0.243 1.424 sum -8.233 5.397 -5.048 11.063 Atomic orbital electron populations 1.86492 1.16591 1.82047 1.50671 1.25060 0.85640 1.10145 0.96515 0.93867 0.78017 0.75325 0.85436 1.20489 1.00611 0.94339 0.98063 1.21387 0.93320 1.00900 0.91105 1.21394 1.03256 0.91410 1.01070 1.18268 0.95707 0.91829 0.83200 1.91559 1.86379 1.83003 1.50753 1.20075 1.06980 0.93702 0.98599 1.18424 0.77918 0.86782 0.82840 1.90848 1.52413 1.71217 1.31105 1.45710 1.55793 1.09878 1.23396 1.22550 0.97913 0.78752 0.99996 0.89258 1.23289 0.95956 0.94013 1.01263 1.22542 0.97612 0.97306 0.95855 0.89437 1.22597 0.98576 0.80954 0.97915 1.47888 1.07423 1.11964 1.40827 1.24442 1.03813 0.84799 1.05450 1.24240 0.89170 1.03466 1.06354 1.75095 1.28093 0.99374 1.16528 1.78282 0.97132 1.13480 1.21302 1.23555 0.97015 0.97095 1.00489 1.21210 0.94599 0.94187 0.94167 0.75201 0.86280 1.21157 1.22978 0.81389 0.81586 0.74358 0.88559 0.85649 0.82991 0.86721 0.74642 0.77414 0.88429 0.93781 0.82112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 4.31 12.83 -148.98 -1.91 2.39 16 2 C -0.06 0.52 2.80 71.23 0.20 0.72 16 3 Si 0.77 -6.08 29.79 68.60 2.04 -4.03 16 4 C -0.13 0.89 5.35 -19.90 -0.11 0.78 16 5 C -0.05 0.35 8.66 22.31 0.19 0.54 16 6 C -0.15 0.37 10.01 22.28 0.22 0.59 16 7 C 0.13 0.69 7.29 22.67 0.17 0.86 16 8 F -0.14 -1.80 15.55 44.97 0.70 -1.10 16 9 C -0.19 -0.56 5.88 -20.05 -0.12 -0.68 16 10 C 0.55 4.04 7.77 86.74 0.67 4.72 16 11 O -0.58 -10.29 14.96 -3.96 -0.06 -10.35 16 12 N -0.70 1.04 5.31 -443.04 -2.35 -1.32 16 13 C 0.11 -0.13 4.21 45.52 0.19 0.06 16 14 H 0.09 0.46 7.50 -2.39 -0.02 0.45 16 15 C -0.11 1.11 7.39 31.12 0.23 1.34 16 16 C -0.11 0.69 3.76 -10.21 -0.04 0.66 16 17 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 18 C 0.12 -1.11 6.29 86.38 0.54 -0.57 16 19 N -0.29 0.02 3.44 -347.73 -1.20 -1.17 16 20 C -0.03 0.11 11.57 83.49 0.97 1.08 16 21 C -0.07 -0.23 12.05 83.73 1.01 0.78 16 22 N -0.33 -4.05 12.41 -58.26 -0.72 -4.78 16 23 N -0.12 -1.22 12.93 37.02 0.48 -0.75 16 24 C -0.14 0.04 7.45 31.18 0.23 0.27 16 25 C -0.02 0.11 9.17 22.52 0.21 0.31 16 26 H 0.40 -6.06 8.70 -74.06 -0.64 -6.71 16 27 H 0.12 -0.96 7.96 -2.39 -0.02 -0.98 16 28 H -0.28 0.77 7.11 99.48 0.71 1.48 16 29 H -0.30 -0.23 7.11 99.48 0.71 0.48 16 30 H 0.17 -2.16 4.88 -2.91 -0.01 -2.17 16 31 H 0.17 -1.06 8.06 -2.91 -0.02 -1.08 16 32 H 0.42 -3.78 6.74 -92.71 -0.63 -4.40 16 33 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 34 H 0.13 -2.03 8.07 -2.39 -0.02 -2.05 16 35 H 0.15 -2.66 8.07 -2.39 -0.02 -2.67 16 36 H 0.11 -1.31 7.85 -2.39 -0.02 -1.33 16 37 H 0.24 -3.31 8.06 -2.91 -0.02 -3.33 16 38 H 0.21 -0.63 8.06 -2.91 -0.02 -0.66 16 39 H 0.10 -0.22 7.90 -2.38 -0.02 -0.24 16 40 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.16 -1.62 6.41 -2.91 -0.02 -1.64 16 Total: 0.00 -36.96 353.77 1.42 -35.54 By element: Atomic # 1 Polarization: -25.76 SS G_CDS: -0.13 Total: -25.89 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 4.57 Total: 11.45 kcal Atomic # 7 Polarization: -4.22 SS G_CDS: -3.79 Total: -8.01 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -1.97 Total: -7.96 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.70 Total: -1.10 kcal Atomic # 14 Polarization: -6.08 SS G_CDS: 2.04 Total: -4.03 kcal Total: -36.96 1.42 -35.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_12335834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.423 kcal (2) G-P(sol) polarization free energy of solvation -36.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds