Wall clock time and date at job start Tue Mar 9 2021 13:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86297 * 109.47308 * 2 1 4 4 C 1.50698 * 109.47379 * 239.99354 * 2 1 3 5 5 C 1.38227 * 120.00254 * 300.00304 * 4 2 1 6 6 C 1.38241 * 120.00180 * 179.97438 * 5 4 2 7 7 C 1.38236 * 119.99392 * 359.95886 * 6 5 4 8 8 C 1.50706 * 119.99406 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47282 * 90.00161 * 8 7 6 10 10 O 1.21280 * 119.99942 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00036 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00042 * 179.97438 * 11 9 8 13 13 H 1.08998 * 112.84866 * 23.80678 * 12 11 9 14 14 C 1.53787 * 113.61128 * 154.99929 * 12 11 9 15 15 C 1.53784 * 87.07923 * 139.98386 * 14 12 11 16 16 H 1.09002 * 113.61478 * 89.11632 * 15 14 12 17 17 C 1.52994 * 113.61233 * 220.01769 * 15 14 12 18 18 N 1.46502 * 109.47057 * 185.00081 * 17 15 14 19 19 C 1.35310 * 125.86875 * 124.71827 * 18 17 15 20 20 C 1.35358 * 106.17236 * 179.90468 * 19 18 17 21 21 N 1.33769 * 106.49933 * 0.34983 * 20 19 18 22 22 N 1.28636 * 108.88179 * 359.77373 * 21 20 19 23 23 C 1.53779 * 87.08045 * 334.56667 * 15 14 12 24 24 C 1.38231 * 120.00629 * 0.27291 * 7 6 5 25 25 C 1.38241 * 119.99797 * 359.51548 * 24 7 6 26 26 H 0.96697 * 113.99638 * 60.00121 * 1 2 3 27 27 H 1.09002 * 109.46996 * 119.99582 * 2 1 3 28 28 H 1.48501 * 110.00076 * 59.99642 * 3 2 1 29 29 H 1.48500 * 110.00525 * 181.31571 * 3 2 1 30 30 H 1.08000 * 120.00099 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.00261 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.47353 * 329.99475 * 8 7 6 33 33 H 1.09002 * 109.47011 * 209.99805 * 8 7 6 34 34 H 0.97005 * 119.99829 * 359.97438 * 11 9 8 35 35 H 1.09004 * 113.61202 * 254.53139 * 14 12 11 36 36 H 1.08994 * 113.61447 * 25.43570 * 14 12 11 37 37 H 1.08994 * 109.47510 * 304.99618 * 17 15 14 38 38 H 1.09001 * 109.47575 * 65.00169 * 17 15 14 39 39 H 1.07993 * 126.91606 * 0.02562 * 19 18 17 40 40 H 1.07999 * 126.74659 * 180.12267 * 20 19 18 41 41 H 1.09006 * 113.61307 * 270.88660 * 23 15 14 42 42 H 1.09007 * 113.61642 * 139.98417 * 23 15 14 43 43 H 1.07993 * 120.00124 * 179.72600 * 24 7 6 44 44 H 1.07994 * 120.00215 * 180.24772 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 1.5975 -2.0339 -1.4490 6 6 2.0579 -2.6855 -2.5779 7 6 2.8516 -2.0133 -3.4885 8 6 3.3531 -2.7235 -4.7195 9 6 2.3594 -2.5504 -5.8392 10 8 1.3437 -1.9135 -5.6555 11 7 2.5988 -3.1043 -7.0443 12 6 1.6326 -2.9365 -8.1326 13 1 1.0058 -2.0533 -8.0097 14 6 2.2550 -3.0601 -9.5334 15 6 0.9917 -3.8370 -9.9402 16 1 0.1885 -3.2008 -10.3119 17 6 1.2746 -5.0327 -10.8518 18 7 0.0077 -5.6322 -11.2782 19 6 -0.3801 -5.8399 -12.5578 20 6 -1.6052 -6.4119 -12.4923 21 7 -1.9061 -6.5176 -11.1931 22 7 -0.9300 -6.0469 -10.5001 23 6 0.8420 -4.2150 -8.4571 24 6 3.1895 -0.6913 -3.2674 25 6 2.7254 -0.0384 -2.1407 26 1 -0.3932 0.4417 -0.7651 27 1 1.7923 -0.5138 0.8900 28 1 1.5615 2.4679 1.2085 29 1 3.5346 1.7703 -0.0320 30 1 0.9769 -2.5589 -0.7379 31 1 1.7974 -3.7197 -2.7486 32 1 3.4748 -3.7847 -4.5025 33 1 4.3128 -2.3011 -5.0170 34 1 3.4110 -3.6140 -7.1910 35 1 2.3651 -2.1055 -10.0480 36 1 3.1637 -3.6615 -9.5559 37 1 1.8311 -4.6984 -11.7273 38 1 1.8622 -5.7729 -10.3086 39 1 0.1765 -5.5997 -13.4514 40 1 -2.2203 -6.7189 -13.3252 41 1 1.3645 -5.1322 -8.1854 42 1 -0.1886 -4.1929 -8.1027 43 1 3.8132 -0.1675 -3.9766 44 1 2.9861 0.9956 -1.9700 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_12335836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:24:52 Heat of formation + Delta-G solvation = 84.380028 kcal Electronic energy + Delta-G solvation = -26485.647598 eV Core-core repulsion = 22600.620386 eV Total energy + Delta-G solvation = -3885.027211 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.14632 -41.37015 -40.53429 -39.42801 -37.64275 -35.75196 -34.36493 -33.83808 -31.94676 -31.92146 -30.13890 -29.11477 -26.71858 -26.00851 -24.47450 -23.82403 -23.51440 -22.56738 -21.89498 -21.42954 -20.64346 -18.66559 -18.45263 -18.02151 -17.56450 -17.14117 -16.84990 -16.55860 -16.32050 -16.11203 -16.01430 -15.80533 -15.55702 -15.22992 -14.98240 -14.73123 -14.53630 -14.29167 -14.06696 -13.74837 -13.45261 -13.31555 -13.24395 -12.93896 -12.80884 -12.60575 -12.27367 -12.24872 -11.98951 -11.96105 -11.90907 -11.70988 -11.39274 -11.02287 -10.90713 -10.46445 -10.30625 -10.00784 -9.88911 -9.61023 -5.01873 0.23130 0.44107 0.71066 1.29165 1.53642 1.59300 1.64570 1.65219 1.91244 2.21471 2.79341 3.32253 3.46116 3.47868 3.60608 3.62397 3.66243 3.78591 3.79016 3.91090 4.00204 4.04257 4.07292 4.19132 4.29702 4.35376 4.36176 4.36830 4.45158 4.47099 4.61732 4.71085 4.71352 4.72183 4.81515 4.85866 4.98602 5.01139 5.06839 5.07727 5.22989 5.29638 5.36835 5.52372 5.58134 5.59927 5.74731 6.00951 6.59950 6.69428 7.31437 7.56708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.079 4.079 3 Si 0.776 3.224 4 C -0.128 4.128 5 C -0.110 4.110 6 C -0.118 4.118 7 C -0.072 4.072 8 C -0.098 4.098 9 C 0.512 3.488 10 O -0.581 6.581 11 N -0.707 5.707 12 C 0.116 3.884 13 H 0.086 0.914 14 C -0.108 4.108 15 C -0.116 4.116 16 H 0.084 0.916 17 C 0.119 3.881 18 N -0.286 5.286 19 C -0.035 4.035 20 C -0.074 4.074 21 N -0.326 5.326 22 N -0.122 5.122 23 C -0.142 4.142 24 C -0.109 4.109 25 C -0.124 4.124 26 H 0.393 0.607 27 H 0.105 0.895 28 H -0.298 1.298 29 H -0.280 1.280 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.420 0.580 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.150 0.850 38 H 0.115 0.885 39 H 0.237 0.763 40 H 0.209 0.791 41 H 0.097 0.903 42 H 0.040 0.960 43 H 0.145 0.855 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.441 0.643 -9.152 13.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.188 4.188 3 Si 0.682 3.318 4 C -0.129 4.129 5 C -0.128 4.128 6 C -0.136 4.136 7 C -0.073 4.073 8 C -0.137 4.137 9 C 0.299 3.701 10 O -0.460 6.460 11 N -0.359 5.359 12 C 0.011 3.989 13 H 0.104 0.896 14 C -0.147 4.147 15 C -0.136 4.136 16 H 0.102 0.898 17 C -0.001 4.001 18 N -0.080 5.080 19 C -0.186 4.186 20 C -0.232 4.232 21 N -0.191 5.191 22 N -0.101 5.101 23 C -0.181 4.181 24 C -0.127 4.127 25 C -0.141 4.141 26 H 0.243 0.757 27 H 0.122 0.878 28 H -0.226 1.226 29 H -0.206 1.206 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.258 0.742 35 H 0.110 0.890 36 H 0.143 0.857 37 H 0.168 0.832 38 H 0.133 0.867 39 H 0.253 0.747 40 H 0.225 0.775 41 H 0.116 0.884 42 H 0.059 0.941 43 H 0.162 0.838 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.863 1.195 -6.565 11.908 hybrid contribution 0.058 -0.838 -0.581 1.022 sum 9.921 0.357 -7.147 12.232 Atomic orbital electron populations 1.86446 1.17582 1.82246 1.50353 1.25262 0.85092 1.11285 0.97192 0.93570 0.78019 0.75508 0.84739 1.20411 0.99711 0.95284 0.97470 1.21072 0.99357 0.94456 0.97909 1.21235 0.97427 1.00621 0.94326 1.19609 0.97648 0.94597 0.95404 1.20769 0.99087 1.04244 0.89647 1.21053 0.86914 0.77802 0.84281 1.90747 1.30030 1.42305 1.82936 1.45849 1.24839 1.54867 1.10355 1.22389 0.91817 0.98029 0.86713 0.89570 1.23282 0.97021 1.01732 0.92638 1.22528 1.00274 0.96451 0.94347 0.89765 1.22604 0.79399 0.95312 1.02751 1.47893 1.15905 1.38833 1.05419 1.24437 0.98646 1.05361 0.90187 1.24234 0.97902 1.05724 0.95376 1.75096 1.20240 1.18313 1.05466 1.78274 0.95042 1.15837 1.20938 1.23514 1.00214 0.98894 0.95511 1.21249 1.00034 0.94038 0.97369 1.21184 0.98212 1.00030 0.94678 0.75706 0.87765 1.22630 1.20629 0.86191 0.85347 0.85539 0.84645 0.74194 0.89017 0.85736 0.83207 0.86693 0.74704 0.77456 0.88424 0.94070 0.83768 0.84051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.69 12.77 -148.98 -1.90 -4.59 16 2 C -0.08 -0.26 2.82 71.24 0.20 -0.06 16 3 Si 0.78 0.31 29.79 68.60 2.04 2.36 16 4 C -0.13 -0.55 5.39 -19.87 -0.11 -0.66 16 5 C -0.11 -0.64 9.61 22.27 0.21 -0.43 16 6 C -0.12 -0.49 9.70 22.27 0.22 -0.27 16 7 C -0.07 -0.11 4.37 -19.86 -0.09 -0.20 16 8 C -0.10 0.54 5.83 29.10 0.17 0.71 16 9 C 0.51 0.21 7.82 87.66 0.69 0.89 16 10 O -0.58 -6.72 15.63 -3.03 -0.05 -6.77 16 11 N -0.71 4.42 5.35 -440.04 -2.36 2.06 16 12 C 0.12 -0.46 4.24 45.52 0.19 -0.26 16 13 H 0.09 0.24 7.46 -2.39 -0.02 0.22 16 14 C -0.11 1.30 7.39 31.12 0.23 1.53 16 15 C -0.12 0.85 3.76 -10.27 -0.04 0.81 16 16 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 17 C 0.12 -1.22 6.29 86.38 0.54 -0.67 16 18 N -0.29 0.24 3.44 -347.75 -1.20 -0.95 16 19 C -0.03 0.14 11.57 83.49 0.97 1.10 16 20 C -0.07 -0.19 12.05 83.73 1.01 0.82 16 21 N -0.33 -3.83 12.41 -58.25 -0.72 -4.55 16 22 N -0.12 -1.11 12.93 37.02 0.48 -0.63 16 23 C -0.14 0.32 7.43 31.12 0.23 0.55 16 24 C -0.11 -0.13 9.70 22.27 0.22 0.09 16 25 C -0.12 -0.24 8.67 22.27 0.19 -0.05 16 26 H 0.39 -0.93 8.70 -74.06 -0.64 -1.57 16 27 H 0.10 0.44 7.96 -2.39 -0.02 0.42 16 28 H -0.30 -2.25 7.11 99.48 0.71 -1.54 16 29 H -0.28 -1.09 7.11 99.48 0.71 -0.38 16 30 H 0.12 0.69 8.06 -2.91 -0.02 0.67 16 31 H 0.13 0.20 8.06 -2.91 -0.02 0.17 16 32 H 0.13 -1.24 8.09 -2.39 -0.02 -1.26 16 33 H 0.14 -1.57 8.08 -2.39 -0.02 -1.59 16 34 H 0.42 -5.87 8.73 -92.70 -0.81 -6.67 16 35 H 0.09 -1.14 8.14 -2.39 -0.02 -1.16 16 36 H 0.12 -2.22 8.08 -2.39 -0.02 -2.23 16 37 H 0.15 -2.71 8.07 -2.39 -0.02 -2.73 16 38 H 0.12 -1.43 7.84 -2.39 -0.02 -1.45 16 39 H 0.24 -3.42 8.06 -2.91 -0.02 -3.44 16 40 H 0.21 -0.74 8.06 -2.91 -0.02 -0.76 16 41 H 0.10 -0.42 7.90 -2.38 -0.02 -0.44 16 42 H 0.04 0.24 8.14 -2.38 -0.02 0.22 16 43 H 0.14 -0.53 8.06 -2.91 -0.02 -0.56 16 44 H 0.14 -0.32 4.88 -2.91 -0.01 -0.34 16 Total: 0.00 -34.64 373.71 0.75 -33.89 By element: Atomic # 1 Polarization: -24.34 SS G_CDS: -0.38 Total: -24.72 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 4.84 Total: 3.91 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: -3.80 Total: -4.07 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -1.95 Total: -11.36 kcal Atomic # 14 Polarization: 0.31 SS G_CDS: 2.04 Total: 2.36 kcal Total: -34.64 0.75 -33.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_12335836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.265 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds