Wall clock time and date at job start Tue Mar 9 2021 13:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35656 * 117.00435 * 2 1 4 4 C 1.40132 * 120.15396 * 180.02562 * 3 2 1 5 5 C 1.47542 * 120.19104 * 359.97438 * 4 3 2 6 6 O 1.21589 * 119.99860 * 359.72265 * 5 4 3 7 7 N 1.34774 * 119.99910 * 179.72237 * 5 4 3 8 8 C 1.46504 * 119.99903 * 180.02562 * 7 5 4 9 9 H 1.09003 * 112.84554 * 336.19714 * 8 7 5 10 10 C 1.53780 * 113.68733 * 107.46606 * 8 7 5 11 11 C 1.53786 * 87.07681 * 139.99382 * 10 8 7 12 12 H 1.08998 * 113.68905 * 89.12841 * 11 10 8 13 13 C 1.52998 * 113.61063 * 220.01314 * 11 10 8 14 14 N 1.46496 * 109.47444 * 272.49876 * 13 11 10 15 15 C 1.35313 * 125.86774 * 125.00133 * 14 13 11 16 16 C 1.35355 * 106.17637 * 180.02562 * 15 14 13 17 17 N 1.33770 * 106.49598 * 0.02562 * 16 15 14 18 18 N 1.28636 * 108.88653 * 359.97438 * 17 16 15 19 19 C 1.53777 * 87.08150 * 334.56220 * 11 10 8 20 20 C 1.39713 * 119.61931 * 179.72702 * 4 3 2 21 21 C 1.37782 * 119.90421 * 0.24710 * 20 4 3 22 22 C 1.50701 * 119.84823 * 179.97438 * 21 20 4 23 23 O 1.42903 * 109.46954 * 65.00523 * 22 21 20 24 24 Si 1.86305 * 109.47036 * 185.00247 * 22 21 20 25 25 C 1.38552 * 120.30208 * 0.02562 * 21 20 4 26 26 C 1.38052 * 120.39082 * 359.97438 * 25 21 20 27 27 H 1.08999 * 109.47116 * 59.99697 * 1 2 3 28 28 H 1.09004 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46948 * 299.99819 * 1 2 3 30 30 H 0.96998 * 120.00141 * 0.02562 * 7 5 4 31 31 H 1.08993 * 113.61531 * 25.44212 * 10 8 7 32 32 H 1.09001 * 113.61081 * 254.53457 * 10 8 7 33 33 H 1.08999 * 109.47047 * 152.49798 * 13 11 10 34 34 H 1.09008 * 109.46978 * 32.50095 * 13 11 10 35 35 H 1.07998 * 126.91382 * 359.97438 * 15 14 13 36 36 H 1.08000 * 126.75432 * 179.73657 * 16 15 14 37 37 H 1.09004 * 113.61180 * 139.98135 * 19 11 10 38 38 H 1.08991 * 113.61836 * 270.80131 * 19 11 10 39 39 H 1.07998 * 120.04553 * 180.27394 * 20 4 3 40 40 H 1.08996 * 109.47287 * 305.00340 * 22 21 20 41 41 H 0.96696 * 113.99995 * 59.99889 * 23 22 21 42 42 H 1.48494 * 109.99961 * 58.68530 * 24 22 21 43 43 H 1.48499 * 109.99921 * 180.02562 * 24 22 21 44 44 H 1.08000 * 119.80376 * 180.02562 * 25 21 20 45 45 H 1.07995 * 119.95852 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4441 1.2856 -0.0005 5 6 4.2550 0.0531 -0.0005 6 8 3.7094 -1.0335 0.0050 7 7 5.6004 0.1316 -0.0067 8 6 6.4057 -1.0923 -0.0073 9 1 5.8723 -1.9500 0.4026 10 6 7.0923 -1.3794 -1.3530 11 6 8.3211 -1.8233 -0.5416 12 1 8.3127 -2.8807 -0.2774 13 6 9.6514 -1.3731 -1.1486 14 7 10.1078 -2.3707 -2.1194 15 6 10.4225 -2.1316 -3.4135 16 6 10.7908 -3.3236 -3.9385 17 7 10.6844 -4.2218 -2.9529 18 7 10.2776 -3.6255 -1.8882 19 6 7.8137 -0.9036 0.5815 20 6 4.0668 2.5363 -0.0063 21 6 3.3038 3.6836 -0.0063 22 6 3.9769 5.0319 -0.0119 23 8 4.6945 5.2009 -1.2361 24 14 2.6892 6.3694 0.1427 25 6 1.9207 3.6033 0.0000 26 6 1.2925 2.3740 0.0057 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 6.0357 0.9985 -0.0108 31 1 7.2652 -0.4869 -1.9542 32 1 6.6266 -2.1875 -1.9171 33 1 10.3946 -1.2688 -0.3581 34 1 9.5164 -0.4142 -1.6491 35 1 10.3861 -1.1811 -3.9250 36 1 11.1041 -3.5132 -4.9545 37 1 7.9302 -1.3274 1.5790 38 1 8.1849 0.1187 0.5099 39 1 5.1447 2.6036 -0.0112 40 1 4.6696 5.0958 0.8271 41 1 4.1397 5.1556 -2.0267 42 1 1.9147 6.1862 1.3964 43 1 3.3401 7.7041 0.1377 44 1 1.3305 4.5077 -0.0005 45 1 0.2139 2.3195 0.0110 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_12496546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:34 Heat of formation + Delta-G solvation = 58.384357 kcal Electronic energy + Delta-G solvation = -29509.361053 eV Core-core repulsion = 25304.524392 eV Total energy + Delta-G solvation = -4204.836660 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.15974 -41.84668 -40.81583 -39.33962 -39.16897 -37.08518 -35.79123 -34.42707 -32.50918 -31.94141 -31.81083 -29.50819 -28.51304 -26.79837 -26.13874 -25.79453 -24.29804 -23.57804 -22.76119 -22.02380 -21.58280 -20.62655 -19.44673 -18.64798 -18.30846 -18.14739 -17.57892 -17.13147 -16.88605 -16.71158 -16.38784 -16.15080 -15.87214 -15.83470 -15.79703 -15.72376 -15.00845 -14.82220 -14.62032 -14.53539 -14.45945 -13.67749 -13.63579 -13.50667 -13.45190 -13.11363 -13.00692 -12.68904 -12.43986 -12.37625 -12.13778 -12.02602 -12.01457 -11.83198 -11.78830 -11.59186 -11.05811 -10.88076 -10.37183 -10.31803 -10.28132 -10.01840 -9.29485 -4.96678 -0.26928 0.21760 0.69997 1.35434 1.51783 1.63850 1.66744 1.75591 2.01425 2.09446 2.26568 2.67253 3.31162 3.37388 3.47775 3.53027 3.58257 3.67568 3.69841 3.74668 3.77678 3.95859 4.01293 4.07195 4.16922 4.28549 4.31346 4.34187 4.35627 4.39767 4.40254 4.57347 4.60614 4.65121 4.67043 4.71114 4.75570 4.82032 4.92715 4.94458 5.00195 5.10485 5.18324 5.27871 5.28777 5.52284 5.57043 5.72708 6.29353 6.51826 6.82874 7.21136 7.54992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.315 6.315 3 C 0.168 3.832 4 C -0.198 4.198 5 C 0.555 3.445 6 O -0.569 6.569 7 N -0.703 5.703 8 C 0.117 3.883 9 H 0.085 0.915 10 C -0.142 4.142 11 C -0.118 4.118 12 H 0.084 0.916 13 C 0.120 3.880 14 N -0.284 5.284 15 C -0.033 4.033 16 C -0.074 4.074 17 N -0.323 5.323 18 N -0.128 5.128 19 C -0.113 4.113 20 C -0.014 4.014 21 C -0.168 4.168 22 C -0.059 4.059 23 O -0.552 6.552 24 Si 0.764 3.236 25 C -0.041 4.041 26 C -0.213 4.213 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.415 0.585 31 H 0.113 0.887 32 H 0.045 0.955 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.236 0.764 36 H 0.210 0.790 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.155 0.845 40 H 0.115 0.885 41 H 0.396 0.604 42 H -0.287 1.287 43 H -0.302 1.302 44 H 0.158 0.842 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 11.606 -2.209 12.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.227 6.227 3 C 0.120 3.880 4 C -0.201 4.201 5 C 0.344 3.656 6 O -0.449 6.449 7 N -0.355 5.355 8 C 0.012 3.988 9 H 0.103 0.897 10 C -0.181 4.181 11 C -0.138 4.138 12 H 0.102 0.898 13 C 0.001 3.999 14 N -0.078 5.078 15 C -0.185 4.185 16 C -0.232 4.232 17 N -0.188 5.188 18 N -0.108 5.108 19 C -0.152 4.152 20 C -0.032 4.032 21 C -0.168 4.168 22 C -0.170 4.170 23 O -0.360 6.360 24 Si 0.671 3.329 25 C -0.059 4.059 26 C -0.232 4.232 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.254 0.746 31 H 0.131 0.869 32 H 0.064 0.936 33 H 0.135 0.865 34 H 0.166 0.834 35 H 0.252 0.748 36 H 0.226 0.774 37 H 0.103 0.897 38 H 0.145 0.855 39 H 0.173 0.827 40 H 0.132 0.868 41 H 0.246 0.754 42 H -0.214 1.214 43 H -0.230 1.230 44 H 0.175 0.825 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.426 10.217 -0.232 10.504 hybrid contribution 0.190 0.326 -0.383 0.538 sum -2.236 10.543 -0.616 10.795 Atomic orbital electron populations 1.23437 0.76573 1.05382 1.02885 1.86337 1.23178 1.26574 1.86589 1.19468 0.91506 0.85512 0.91518 1.19425 0.91066 0.94064 1.15587 1.18394 0.82972 0.88573 0.75637 1.90821 1.72633 1.30584 1.50813 1.45719 1.04853 1.10115 1.74853 1.22388 0.90823 0.88016 0.97597 0.89688 1.23595 0.95583 1.01999 0.96909 1.22553 0.92486 1.00827 0.97968 0.89762 1.22581 0.96493 0.89305 0.91533 1.47831 1.41471 1.07847 1.10652 1.24416 1.05343 1.03736 0.84993 1.24235 1.07147 0.89891 1.01898 1.75081 1.16703 1.29087 0.97909 1.78224 1.19834 0.91317 1.21378 1.23312 0.91900 1.01757 0.98221 1.21122 1.00871 0.88936 0.92315 1.20258 0.93781 0.96094 1.06693 1.24973 1.03193 0.98443 0.90380 1.86469 1.38833 1.95039 1.15690 0.93901 0.79138 0.74262 0.85568 1.21282 0.93810 0.97739 0.93048 1.21472 1.01764 0.90961 1.08972 0.90596 0.87652 0.90979 0.74627 0.86908 0.93644 0.86538 0.83367 0.74756 0.77364 0.89705 0.85517 0.82743 0.86774 0.75424 1.21399 1.23031 0.82474 0.82137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.10 16 2 O -0.32 -2.62 8.57 -68.79 -0.59 -3.21 16 3 C 0.17 0.74 6.70 22.84 0.15 0.89 16 4 C -0.20 -0.69 5.89 -20.01 -0.12 -0.81 16 5 C 0.56 4.15 7.76 86.70 0.67 4.82 16 6 O -0.57 -9.94 14.76 16.92 0.25 -9.69 16 7 N -0.70 0.87 5.31 -443.19 -2.35 -1.48 16 8 C 0.12 -0.09 4.24 45.52 0.19 0.10 16 9 H 0.08 0.55 7.46 -2.39 -0.02 0.53 16 10 C -0.14 0.39 7.43 31.12 0.23 0.62 16 11 C -0.12 0.56 3.84 -10.27 -0.04 0.52 16 12 H 0.08 0.15 7.91 -2.39 -0.02 0.13 16 13 C 0.12 -0.99 6.29 86.38 0.54 -0.45 16 14 N -0.28 -0.19 3.44 -347.74 -1.20 -1.39 16 15 C -0.03 0.09 11.57 83.49 0.97 1.06 16 16 C -0.07 -0.26 12.05 83.73 1.01 0.75 16 17 N -0.32 -4.10 12.41 -58.25 -0.72 -4.82 16 18 N -0.13 -1.35 12.76 37.02 0.47 -0.88 16 19 C -0.11 0.92 7.39 31.12 0.23 1.15 16 20 C -0.01 0.04 9.16 22.52 0.21 0.25 16 21 C -0.17 0.84 5.35 -19.90 -0.11 0.73 16 22 C -0.06 0.39 2.79 71.24 0.20 0.59 16 23 O -0.55 3.49 12.83 -148.98 -1.91 1.57 16 24 Si 0.76 -5.02 29.78 68.60 2.04 -2.97 16 25 C -0.04 0.23 8.65 22.30 0.19 0.43 16 26 C -0.21 0.54 9.03 22.34 0.20 0.74 16 27 H 0.08 -0.41 7.67 -2.39 -0.02 -0.43 16 28 H 0.11 -0.24 8.14 -2.38 -0.02 -0.26 16 29 H 0.07 -0.35 7.65 -2.39 -0.02 -0.36 16 30 H 0.41 -3.52 6.76 -92.71 -0.63 -4.15 16 31 H 0.11 -0.87 7.90 -2.39 -0.02 -0.89 16 32 H 0.04 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.12 -1.20 8.14 -2.39 -0.02 -1.22 16 34 H 0.15 -2.40 7.77 -2.38 -0.02 -2.42 16 35 H 0.24 -3.11 8.06 -2.91 -0.02 -3.13 16 36 H 0.21 -0.57 8.06 -2.91 -0.02 -0.59 16 37 H 0.08 -0.60 8.14 -2.38 -0.02 -0.62 16 38 H 0.13 -1.85 8.08 -2.39 -0.02 -1.87 16 39 H 0.16 -1.31 6.40 -2.91 -0.02 -1.33 16 40 H 0.11 -0.72 7.96 -2.39 -0.02 -0.74 16 41 H 0.40 -5.37 8.70 -74.06 -0.64 -6.01 16 42 H -0.29 0.40 7.11 99.48 0.71 1.11 16 43 H -0.30 -0.55 7.11 99.48 0.71 0.16 16 44 H 0.16 -1.73 4.88 -2.91 -0.01 -1.75 16 45 H 0.16 -1.18 6.30 -2.91 -0.02 -1.20 16 Total: 0.00 -36.71 376.15 1.46 -35.25 By element: Atomic # 1 Polarization: -24.69 SS G_CDS: -0.18 Total: -24.87 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 5.65 Total: 12.49 kcal Atomic # 7 Polarization: -4.77 SS G_CDS: -3.80 Total: -8.57 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -2.25 Total: -11.33 kcal Atomic # 14 Polarization: -5.02 SS G_CDS: 2.04 Total: -2.97 kcal Total: -36.71 1.46 -35.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_12496546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.639 kcal (2) G-P(sol) polarization free energy of solvation -36.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds