Wall clock time and date at job start Tue Mar 9 2021 13:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.46789 * 2 1 4 4 C 1.50701 * 109.47552 * 239.99674 * 2 1 3 5 5 C 1.35080 * 126.07338 * 105.22643 * 4 2 1 6 6 N 1.35041 * 107.97989 * 179.97438 * 5 4 2 7 7 C 1.46495 * 125.93052 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46850 * 125.00278 * 7 6 5 9 9 O 1.21275 * 120.00030 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99921 * 180.02562 * 8 7 6 11 11 C 1.46495 * 119.99928 * 180.02562 * 10 8 7 12 12 H 1.08998 * 112.84963 * 336.18843 * 11 10 8 13 13 C 1.53778 * 113.61990 * 107.49722 * 11 10 8 14 14 C 1.53777 * 87.08404 * 139.97912 * 13 11 10 15 15 H 1.09002 * 113.61474 * 89.12054 * 14 13 11 16 16 C 1.53008 * 113.69037 * 220.00784 * 14 13 11 17 17 N 1.46495 * 109.47084 * 272.53514 * 16 14 13 18 18 C 1.35312 * 125.86573 * 124.71633 * 17 16 14 19 19 C 1.35354 * 106.17490 * 179.90104 * 18 17 16 20 20 N 1.33775 * 106.49330 * 0.35544 * 19 18 17 21 21 N 1.28628 * 108.88496 * 359.76875 * 20 19 18 22 22 C 1.53778 * 87.08292 * 334.56599 * 14 13 11 23 23 N 1.40077 * 108.13641 * 359.75297 * 6 5 4 24 24 C 1.31623 * 108.10626 * 0.42096 * 23 6 5 25 25 C 1.48414 * 126.03623 * 179.85171 * 24 23 6 26 26 C 1.39324 * 120.12097 * 136.64214 * 25 24 23 27 27 C 1.38023 * 119.88020 * 179.69975 * 26 25 24 28 28 C 1.38325 * 120.11818 * 0.57446 * 27 26 25 29 29 C 1.38318 * 120.24002 * 359.72068 * 28 27 26 30 30 C 1.38025 * 120.11783 * 359.97438 * 29 28 27 31 31 H 0.96699 * 114.00331 * 60.00483 * 1 2 3 32 32 H 1.09003 * 109.46651 * 119.99480 * 2 1 3 33 33 H 1.48493 * 110.00085 * 59.99762 * 3 2 1 34 34 H 1.48502 * 109.99570 * 181.31513 * 3 2 1 35 35 H 1.08003 * 126.01235 * 359.97286 * 5 4 2 36 36 H 1.09002 * 109.47182 * 244.99598 * 7 6 5 37 37 H 1.08998 * 109.47347 * 5.00575 * 7 6 5 38 38 H 0.96999 * 119.99754 * 359.97438 * 10 8 7 39 39 H 1.09003 * 113.61403 * 254.53099 * 13 11 10 40 40 H 1.09003 * 113.61328 * 25.42974 * 13 11 10 41 41 H 1.08996 * 109.46691 * 32.53557 * 16 14 13 42 42 H 1.08999 * 109.46512 * 152.53403 * 16 14 13 43 43 H 1.07995 * 126.91542 * 0.02562 * 18 17 16 44 44 H 1.07998 * 126.75243 * 180.11828 * 19 18 17 45 45 H 1.09001 * 113.61585 * 270.88920 * 22 14 13 46 46 H 1.08998 * 113.61714 * 139.97416 * 22 14 13 47 47 H 1.08007 * 120.06021 * 359.97438 * 26 25 24 48 48 H 1.08000 * 119.94347 * 180.31597 * 27 26 25 49 49 H 1.07994 * 119.87620 * 179.74319 * 28 27 26 50 50 H 1.07999 * 119.94273 * 179.97438 * 29 28 27 51 51 H 1.08006 * 120.05562 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2304 5 6 2.4670 -0.1253 -2.3238 6 7 2.7916 -1.0993 -3.2010 7 6 3.3997 -0.9014 -4.5190 8 6 4.6638 -1.7160 -4.6164 9 8 5.0218 -2.3946 -3.6772 10 7 5.3971 -1.6896 -5.7470 11 6 6.6257 -2.4819 -5.8418 12 1 7.0613 -2.7056 -4.8680 13 6 6.4976 -3.7101 -6.7582 14 6 7.9151 -3.3865 -7.2588 15 1 8.7036 -3.8590 -6.6729 16 6 8.0951 -3.5840 -8.7654 17 7 8.4697 -4.9745 -9.0343 18 6 7.8230 -5.8229 -9.8667 19 6 8.5034 -6.9919 -9.8167 20 7 9.5151 -6.8063 -8.9613 21 7 9.4672 -5.6007 -8.5152 22 6 7.6391 -1.9279 -6.8574 23 7 2.4507 -2.3320 -2.6297 24 6 1.9265 -2.1026 -1.4444 25 6 1.4250 -3.1297 -0.4978 26 6 1.7241 -3.0351 0.8597 27 6 1.2499 -3.9897 1.7365 28 6 0.4889 -5.0455 1.2680 29 6 0.1941 -5.1477 -0.0795 30 6 0.6580 -4.1952 -0.9642 31 1 -0.3934 0.4416 -0.7651 32 1 1.7923 -0.5138 0.8901 33 1 1.5613 2.4679 1.2084 34 1 3.5345 1.7703 -0.0320 35 1 2.6103 0.9350 -2.4706 36 1 2.7015 -1.2205 -5.2929 37 1 3.6361 0.1538 -4.6554 38 1 5.1110 -1.1466 -6.4980 39 1 6.4305 -4.6538 -6.2168 40 1 5.7294 -3.6050 -7.5244 41 1 7.1600 -3.3543 -9.2761 42 1 8.8797 -2.9197 -9.1276 43 1 6.9425 -5.6096 -10.4545 44 1 8.2726 -7.8977 -10.3577 45 1 7.1829 -1.3356 -7.6506 46 1 8.4934 -1.4328 -6.3959 47 1 2.3223 -2.2137 1.2258 48 1 1.4769 -3.9145 2.7897 49 1 0.1233 -5.7925 1.9569 50 1 -0.4002 -5.9743 -0.4402 51 1 0.4268 -4.2757 -2.0161 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_12622748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:41 Heat of formation + Delta-G solvation = 174.495436 kcal Electronic energy + Delta-G solvation = -35326.168163 eV Core-core repulsion = 30618.443167 eV Total energy + Delta-G solvation = -4707.724995 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.174 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -44.18366 -42.49579 -41.22967 -39.92794 -39.52949 -37.66512 -35.82819 -34.84853 -34.27247 -32.33798 -31.99802 -31.96059 -31.44129 -29.76359 -28.54535 -26.81122 -26.10855 -24.96032 -23.98539 -23.58394 -23.47538 -22.42625 -21.79247 -21.54162 -21.09666 -20.55434 -18.84903 -18.58183 -18.34807 -17.76966 -17.57109 -17.29520 -16.74538 -16.68920 -16.35288 -16.26442 -16.11319 -15.82055 -15.67891 -15.47662 -15.42195 -15.02576 -14.98073 -14.70246 -14.39229 -14.34500 -14.19227 -13.97856 -13.69647 -13.67180 -13.51041 -13.34860 -12.99963 -12.71585 -12.50676 -12.43656 -12.40424 -12.17570 -12.04188 -11.88774 -11.85140 -11.73324 -11.61595 -11.27294 -10.94876 -10.62241 -10.34189 -10.23169 -10.13654 -9.93539 -9.78363 -9.33227 -5.03000 0.07332 0.40583 0.67645 0.81032 1.30725 1.40921 1.45628 1.51877 1.61330 1.62091 1.75118 2.03173 2.10249 2.83498 3.28414 3.33402 3.37125 3.47902 3.59637 3.64067 3.68107 3.71762 3.73543 3.93008 3.95913 3.98353 4.01916 4.05924 4.15518 4.17283 4.21643 4.29169 4.33444 4.38429 4.42417 4.48869 4.51818 4.58608 4.64270 4.71607 4.75891 4.78992 4.82305 4.92629 4.94057 4.99441 5.04630 5.14402 5.25854 5.26255 5.49265 5.50550 5.51652 5.56816 5.71282 5.93463 5.98110 6.47916 6.58723 6.90724 7.18577 7.52663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.045 4.045 3 Si 0.805 3.195 4 C -0.271 4.271 5 C 0.080 3.920 6 N -0.360 5.360 7 C 0.110 3.890 8 C 0.492 3.508 9 O -0.573 6.573 10 N -0.697 5.697 11 C 0.119 3.881 12 H 0.076 0.924 13 C -0.144 4.144 14 C -0.123 4.123 15 H 0.078 0.922 16 C 0.120 3.880 17 N -0.284 5.284 18 C -0.033 4.033 19 C -0.075 4.075 20 N -0.324 5.324 21 N -0.129 5.129 22 C -0.108 4.108 23 N -0.294 5.294 24 C 0.106 3.894 25 C -0.026 4.026 26 C -0.110 4.110 27 C -0.125 4.125 28 C -0.119 4.119 29 C -0.125 4.125 30 C -0.110 4.110 31 H 0.392 0.608 32 H 0.090 0.910 33 H -0.301 1.301 34 H -0.286 1.286 35 H 0.231 0.769 36 H 0.146 0.854 37 H 0.185 0.815 38 H 0.426 0.574 39 H 0.035 0.965 40 H 0.117 0.883 41 H 0.151 0.849 42 H 0.117 0.883 43 H 0.237 0.763 44 H 0.209 0.791 45 H 0.135 0.865 46 H 0.083 0.917 47 H 0.122 0.878 48 H 0.144 0.856 49 H 0.148 0.852 50 H 0.145 0.855 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.651 11.227 -10.924 16.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.154 4.154 3 Si 0.710 3.290 4 C -0.282 4.282 5 C -0.065 4.065 6 N -0.141 5.141 7 C -0.013 4.013 8 C 0.278 3.722 9 O -0.451 6.451 10 N -0.351 5.351 11 C 0.013 3.987 12 H 0.094 0.906 13 C -0.183 4.183 14 C -0.143 4.143 15 H 0.096 0.904 16 C 0.001 3.999 17 N -0.078 5.078 18 C -0.184 4.184 19 C -0.233 4.233 20 N -0.189 5.189 21 N -0.109 5.109 22 C -0.146 4.146 23 N -0.116 5.116 24 C -0.060 4.060 25 C -0.027 4.027 26 C -0.130 4.130 27 C -0.143 4.143 28 C -0.137 4.137 29 C -0.143 4.143 30 C -0.129 4.129 31 H 0.241 0.759 32 H 0.108 0.892 33 H -0.229 1.229 34 H -0.213 1.213 35 H 0.247 0.753 36 H 0.164 0.836 37 H 0.202 0.798 38 H 0.265 0.735 39 H 0.054 0.946 40 H 0.135 0.865 41 H 0.169 0.831 42 H 0.135 0.865 43 H 0.254 0.746 44 H 0.226 0.774 45 H 0.153 0.847 46 H 0.101 0.899 47 H 0.140 0.860 48 H 0.162 0.838 49 H 0.165 0.835 50 H 0.162 0.838 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.209 10.316 -9.367 14.299 hybrid contribution -0.731 -0.689 0.222 1.028 sum -3.940 9.628 -9.146 13.851 Atomic orbital electron populations 1.86481 1.17706 1.82327 1.49990 1.24755 0.84861 1.10772 0.95037 0.94109 0.76766 0.73010 0.85151 1.20658 1.14680 0.92381 1.00510 1.22901 0.97833 0.96976 0.88763 1.48184 1.47319 1.03481 1.15150 1.22075 0.92525 1.04911 0.81825 1.21284 0.85999 0.82166 0.82787 1.90841 1.71415 1.43093 1.39737 1.45668 1.24287 1.48536 1.16585 1.22284 0.85597 0.92336 0.98454 0.90560 1.23607 0.97208 0.97597 0.99844 1.22577 0.97706 0.99446 0.94544 0.90386 1.22609 1.05486 0.74917 0.96894 1.47855 1.18180 1.13740 1.28045 1.24420 1.03472 0.90281 1.00250 1.24246 0.94998 1.01752 1.02324 1.75083 1.22525 1.08601 1.12678 1.78216 1.09615 1.01764 1.21282 1.23298 0.98512 0.94378 0.98422 1.77707 1.19365 1.04303 1.10207 1.20812 0.98505 0.93728 0.92926 1.17993 0.98883 0.93870 0.92000 1.21243 1.00011 0.99537 0.92176 1.21380 0.97979 0.94433 1.00540 1.21570 0.97733 0.98399 0.96032 1.21393 1.00106 0.99125 0.93643 1.21282 0.97654 0.93924 1.00035 0.75903 0.89221 1.22883 1.21324 0.75330 0.83604 0.79769 0.73456 0.94560 0.86465 0.83074 0.86452 0.74621 0.77439 0.84711 0.89872 0.86022 0.83805 0.83473 0.83762 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.78 12.88 -148.98 -1.92 -3.69 16 2 C -0.04 -0.11 2.51 71.24 0.18 0.07 16 3 Si 0.80 -2.62 30.74 68.60 2.11 -0.51 16 4 C -0.27 -1.16 5.35 -19.95 -0.11 -1.26 16 5 C 0.08 -0.20 9.96 83.47 0.83 0.63 16 6 N -0.36 -0.48 3.41 -351.92 -1.20 -1.68 16 7 C 0.11 -1.02 6.99 85.64 0.60 -0.42 16 8 C 0.49 -0.48 7.86 87.66 0.69 0.21 16 9 O -0.57 -7.83 15.29 -3.01 -0.05 -7.87 16 10 N -0.70 6.42 5.35 -440.04 -2.36 4.07 16 11 C 0.12 -0.57 4.24 45.52 0.19 -0.38 16 12 H 0.08 0.32 7.46 -2.39 -0.02 0.30 16 13 C -0.14 0.74 7.43 31.12 0.23 0.97 16 14 C -0.12 0.83 3.83 -10.27 -0.04 0.80 16 15 H 0.08 0.07 7.91 -2.39 -0.02 0.05 16 16 C 0.12 -1.24 6.30 86.38 0.54 -0.69 16 17 N -0.28 0.13 3.44 -347.74 -1.20 -1.06 16 18 C -0.03 0.12 11.57 83.49 0.97 1.08 16 19 C -0.08 -0.23 12.05 83.73 1.01 0.78 16 20 N -0.32 -4.00 12.41 -58.25 -0.72 -4.73 16 21 N -0.13 -1.28 12.76 37.02 0.47 -0.81 16 22 C -0.11 1.29 7.39 31.12 0.23 1.52 16 23 N -0.29 -3.48 11.66 -48.16 -0.56 -4.04 16 24 C 0.11 1.20 6.66 42.53 0.28 1.48 16 25 C -0.03 -0.32 5.74 -20.04 -0.12 -0.43 16 26 C -0.11 -1.14 8.89 22.48 0.20 -0.94 16 27 C -0.13 -0.88 10.03 22.24 0.22 -0.65 16 28 C -0.12 -0.67 10.04 22.31 0.22 -0.45 16 29 C -0.12 -0.86 10.03 22.24 0.22 -0.64 16 30 C -0.11 -1.17 9.78 22.48 0.22 -0.95 16 31 H 0.39 -2.34 8.70 -74.06 -0.64 -2.98 16 32 H 0.09 0.54 5.58 -2.39 -0.01 0.53 16 33 H -0.30 -1.39 7.11 99.48 0.71 -0.68 16 34 H -0.29 -0.50 7.11 99.48 0.71 0.21 16 35 H 0.23 -3.23 6.40 -2.91 -0.02 -3.25 16 36 H 0.15 -2.13 8.14 -2.39 -0.02 -2.15 16 37 H 0.19 -3.82 8.07 -2.39 -0.02 -3.84 16 38 H 0.43 -8.13 8.73 -92.71 -0.81 -8.94 16 39 H 0.04 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.12 -1.29 7.90 -2.39 -0.02 -1.31 16 41 H 0.15 -2.87 7.77 -2.39 -0.02 -2.89 16 42 H 0.12 -1.46 8.14 -2.39 -0.02 -1.48 16 43 H 0.24 -3.42 8.06 -2.91 -0.02 -3.45 16 44 H 0.21 -0.62 8.06 -2.91 -0.02 -0.65 16 45 H 0.13 -2.67 8.08 -2.39 -0.02 -2.69 16 46 H 0.08 -0.86 8.14 -2.39 -0.02 -0.88 16 47 H 0.12 1.06 6.23 -2.91 -0.02 1.04 16 48 H 0.14 0.31 8.06 -2.91 -0.02 0.29 16 49 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 50 H 0.14 0.28 8.06 -2.91 -0.02 0.26 16 51 H 0.12 1.19 8.06 -2.91 -0.02 1.17 16 Total: 0.00 -51.58 432.55 0.74 -50.84 By element: Atomic # 1 Polarization: -30.80 SS G_CDS: -0.42 Total: -31.23 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 6.58 Total: 0.71 kcal Atomic # 7 Polarization: -2.68 SS G_CDS: -5.56 Total: -8.24 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -1.96 Total: -11.57 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: 2.11 Total: -0.51 kcal Total: -51.58 0.74 -50.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_12622748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.336 kcal (2) G-P(sol) polarization free energy of solvation -51.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds