Wall clock time and date at job start Tue Mar 9 2021 13:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.47071 * 2 1 4 4 C 1.50701 * 109.46837 * 119.99733 * 2 1 3 5 5 C 1.34837 * 125.65412 * 65.00711 * 4 2 1 6 6 C 1.40798 * 107.05252 * 180.02562 * 5 4 2 7 7 C 1.36110 * 106.73208 * 359.97438 * 6 5 4 8 8 C 1.47562 * 125.94502 * 180.02562 * 7 6 5 9 9 C 1.39921 * 119.95687 * 359.97438 * 8 7 6 10 10 C 1.36426 * 120.28054 * 179.97438 * 9 8 7 11 11 C 1.39874 * 120.18644 * 0.02562 * 10 9 8 12 12 C 1.47295 * 120.04652 * 179.97438 * 11 10 9 13 13 O 1.21628 * 119.99842 * 180.02562 * 12 11 10 14 14 N 1.34778 * 120.00159 * 359.97438 * 12 11 10 15 15 C 1.46495 * 120.00044 * 180.02562 * 14 12 11 16 16 H 1.09003 * 112.84916 * 336.19723 * 15 14 12 17 17 C 1.53957 * 113.74270 * 107.40831 * 15 14 12 18 18 C 1.53785 * 87.02030 * 139.94371 * 17 15 14 19 19 H 1.09000 * 113.61519 * 89.22752 * 18 17 15 20 20 C 1.52991 * 113.61246 * 220.04978 * 18 17 15 21 21 N 1.46508 * 109.47158 * 274.13467 * 20 18 17 22 22 C 1.35316 * 125.86875 * 125.01551 * 21 20 18 23 23 C 1.35352 * 106.17299 * 179.97438 * 22 21 20 24 24 N 1.33774 * 106.49549 * 359.97438 * 23 22 21 25 25 N 1.28626 * 108.88702 * 0.02562 * 24 23 22 26 26 C 1.53782 * 87.17160 * 334.63582 * 18 17 15 27 27 C 1.40407 * 119.91025 * 0.25366 * 11 10 9 28 28 O 1.35666 * 120.14147 * 179.74839 * 27 11 10 29 29 C 1.38286 * 119.72063 * 359.44538 * 27 11 10 30 30 O 1.34235 * 125.65524 * 245.35018 * 4 2 1 31 31 H 0.96703 * 113.99873 * 299.99728 * 1 2 3 32 32 H 1.08999 * 109.47154 * 239.99897 * 2 1 3 33 33 H 1.48497 * 109.99949 * 299.99595 * 3 2 1 34 34 H 1.48504 * 110.00274 * 61.31827 * 3 2 1 35 35 H 1.08001 * 126.47295 * 0.05795 * 5 4 2 36 36 H 1.07989 * 126.63543 * 179.97438 * 6 5 4 37 37 H 1.08001 * 119.85715 * 0.02562 * 9 8 7 38 38 H 1.08000 * 119.90782 * 180.02562 * 10 9 8 39 39 H 0.97000 * 119.99336 * 0.02562 * 14 12 11 40 40 H 1.08992 * 113.61439 * 25.42225 * 17 15 14 41 41 H 1.09000 * 113.66439 * 254.47024 * 17 15 14 42 42 H 1.08999 * 109.47510 * 154.13305 * 20 18 17 43 43 H 1.09006 * 109.47555 * 34.13431 * 20 18 17 44 44 H 1.07994 * 126.90970 * 359.96732 * 22 21 20 45 45 H 1.08000 * 126.74897 * 180.26271 * 23 22 21 46 46 H 1.09006 * 113.61033 * 139.93811 * 26 18 17 47 47 H 1.08998 * 113.61931 * 270.76185 * 26 18 17 48 48 H 0.96695 * 114.00510 * 89.99680 * 28 27 11 49 49 H 1.07997 * 120.09324 * 180.27369 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7568 -2.0180 1.5094 6 6 2.3799 -2.2627 2.7481 7 6 2.9072 -1.0782 3.1622 8 6 3.6562 -0.8539 4.4137 9 6 3.8765 -1.9170 5.2963 10 6 4.5685 -1.7172 6.4549 11 6 5.0626 -0.4468 6.7688 12 6 5.8089 -0.2344 8.0208 13 8 6.2377 0.8707 8.2931 14 7 6.0157 -1.2644 8.8651 15 6 6.7574 -1.0530 10.1106 16 1 7.4241 -0.1917 10.0652 17 6 5.8735 -1.0807 11.3708 18 6 7.0106 -1.8591 12.0536 19 1 7.7470 -1.2195 12.5400 20 6 6.5210 -2.9938 12.9555 21 7 6.2241 -2.4643 14.2889 22 6 5.0490 -2.5896 14.9480 23 6 5.2129 -1.9582 16.1340 24 7 6.4639 -1.4844 16.1424 25 7 7.0364 -1.8009 15.0349 26 6 7.4312 -2.3258 10.6499 27 6 4.8411 0.6269 5.8916 28 8 5.3138 1.8621 6.1939 29 6 4.1446 0.4188 4.7153 30 8 2.6210 -0.1449 2.2337 31 1 -0.3933 0.4417 0.7651 32 1 1.7924 -0.5138 -0.8900 33 1 1.5615 2.4678 -1.2085 34 1 1.5879 2.4586 1.2242 35 1 1.2376 -2.7411 0.8979 36 1 2.4299 -3.2074 3.2688 37 1 3.4977 -2.9002 5.0589 38 1 4.7354 -2.5422 7.1316 39 1 5.6733 -2.1456 8.6480 40 1 4.9587 -1.6606 11.2498 41 1 5.6975 -0.0958 11.8035 42 1 7.2954 -3.7572 13.0318 43 1 5.6188 -3.4330 12.5297 44 1 4.1594 -3.0921 14.5982 45 1 4.4796 -1.8607 16.9209 46 1 8.5110 -2.3447 10.5015 47 1 6.9441 -3.2475 10.3319 48 1 6.2059 2.0338 5.8627 49 1 3.9746 1.2394 4.0341 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_12807986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:51 Heat of formation + Delta-G solvation = 71.245012 kcal Electronic energy + Delta-G solvation = -35025.773009 eV Core-core repulsion = 30118.133415 eV Total energy + Delta-G solvation = -4907.639594 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.152 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -44.15084 -43.74087 -41.69856 -40.53081 -39.13581 -38.20908 -37.87900 -35.77925 -34.59869 -34.15704 -33.15866 -31.93540 -31.31883 -30.55302 -29.41702 -27.13272 -26.76861 -25.17406 -24.14198 -24.00091 -23.54844 -22.60023 -22.23378 -21.83954 -21.34651 -20.69857 -19.70123 -18.81175 -18.59400 -18.55761 -17.75173 -17.61657 -17.50634 -17.09454 -16.71347 -16.52892 -16.27072 -16.09559 -15.92870 -15.82636 -15.77897 -15.43688 -14.99731 -14.82794 -14.56095 -14.44098 -14.31111 -13.97128 -13.80117 -13.64865 -13.57490 -13.51936 -13.46714 -13.03511 -12.96978 -12.72701 -12.66353 -12.35410 -12.20852 -12.02970 -11.88065 -11.79825 -11.57625 -11.13067 -11.00170 -10.85282 -10.83454 -10.62890 -10.31040 -10.09544 -9.95042 -9.01347 -5.00934 -0.79239 0.14876 0.64298 0.70999 1.11684 1.42979 1.44719 1.53770 1.64348 1.69217 1.87302 1.91666 2.06496 2.64368 3.01872 3.20629 3.33020 3.36512 3.39928 3.52442 3.61957 3.65335 3.71389 3.77772 3.86920 3.99772 4.01417 4.01915 4.09336 4.23237 4.32109 4.36380 4.37012 4.41801 4.43699 4.60371 4.65485 4.68330 4.70415 4.75941 4.79989 4.83652 4.90755 4.96446 5.03517 5.06745 5.10545 5.18278 5.22905 5.29264 5.43963 5.51967 5.55789 5.74278 5.96293 6.30053 6.49311 6.69090 7.18347 7.55880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.032 4.032 3 Si 0.762 3.238 4 C -0.052 4.052 5 C -0.181 4.181 6 C -0.170 4.170 7 C 0.004 3.996 8 C 0.025 3.975 9 C -0.109 4.109 10 C -0.048 4.048 11 C -0.179 4.179 12 C 0.555 3.445 13 O -0.569 6.569 14 N -0.698 5.698 15 C 0.117 3.883 16 H 0.086 0.914 17 C -0.145 4.145 18 C -0.121 4.121 19 H 0.082 0.918 20 C 0.119 3.881 21 N -0.283 5.283 22 C -0.033 4.033 23 C -0.075 4.075 24 N -0.324 5.324 25 N -0.128 5.128 26 C -0.110 4.110 27 C 0.157 3.843 28 O -0.498 6.498 29 C -0.155 4.155 30 O -0.178 6.178 31 H 0.389 0.611 32 H 0.158 0.842 33 H -0.281 1.281 34 H -0.299 1.299 35 H 0.167 0.833 36 H 0.184 0.816 37 H 0.172 0.828 38 H 0.178 0.822 39 H 0.419 0.581 40 H 0.113 0.887 41 H 0.041 0.959 42 H 0.117 0.883 43 H 0.150 0.850 44 H 0.236 0.764 45 H 0.208 0.792 46 H 0.086 0.914 47 H 0.131 0.869 48 H 0.408 0.592 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.126 -12.451 -5.260 13.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.142 4.142 3 Si 0.666 3.334 4 C -0.102 4.102 5 C -0.200 4.200 6 C -0.189 4.189 7 C -0.045 4.045 8 C 0.024 3.976 9 C -0.127 4.127 10 C -0.066 4.066 11 C -0.183 4.183 12 C 0.343 3.657 13 O -0.448 6.448 14 N -0.350 5.350 15 C 0.012 3.988 16 H 0.104 0.896 17 C -0.184 4.184 18 C -0.141 4.141 19 H 0.101 0.899 20 C 0.000 4.000 21 N -0.077 5.077 22 C -0.185 4.185 23 C -0.233 4.233 24 N -0.189 5.189 25 N -0.107 5.107 26 C -0.148 4.148 27 C 0.111 3.889 28 O -0.311 6.311 29 C -0.174 4.174 30 O -0.076 6.076 31 H 0.239 0.761 32 H 0.176 0.824 33 H -0.207 1.207 34 H -0.226 1.226 35 H 0.185 0.815 36 H 0.202 0.798 37 H 0.190 0.810 38 H 0.196 0.804 39 H 0.258 0.742 40 H 0.132 0.868 41 H 0.060 0.940 42 H 0.135 0.865 43 H 0.168 0.832 44 H 0.253 0.747 45 H 0.225 0.775 46 H 0.104 0.896 47 H 0.149 0.851 48 H 0.268 0.732 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.924 -10.179 -5.223 11.478 hybrid contribution -1.798 -0.098 0.288 1.824 sum -2.722 -10.277 -4.934 11.721 Atomic orbital electron populations 1.86640 1.17250 1.80333 1.50038 1.24444 0.83506 1.11826 0.94390 0.93680 0.90537 0.72280 0.76870 1.23150 1.00806 0.94235 0.92037 1.21848 1.03968 0.95709 0.98444 1.22253 1.00673 0.98946 0.97029 1.20611 1.04619 0.87897 0.91407 1.17976 0.95304 0.93944 0.90334 1.21085 0.99268 0.99371 0.92932 1.21200 0.93654 0.95022 0.96721 1.20534 1.05535 0.95407 0.96838 1.18325 0.79177 0.84457 0.83736 1.90836 1.51902 1.25592 1.76492 1.45685 1.56511 1.12271 1.20574 1.22427 0.94298 1.00112 0.81949 0.89606 1.23644 0.98640 1.00484 0.95636 1.22568 0.98943 0.97256 0.95289 0.89939 1.22608 1.06227 0.96286 0.74866 1.47848 1.09181 1.34715 1.15993 1.24407 0.93347 1.06369 0.94384 1.24228 0.95581 1.02709 1.00761 1.75081 1.09021 1.21166 1.13627 1.78214 1.19925 1.13217 0.99342 1.23306 1.02526 0.97682 0.91330 1.18544 0.94766 0.84192 0.91405 1.84728 1.37477 1.28688 1.80222 1.21566 1.01217 0.97740 0.96851 1.83940 1.58245 1.38515 1.26907 0.76081 0.82428 1.20709 1.22583 0.81508 0.79849 0.81048 0.80449 0.74191 0.86828 0.94020 0.86465 0.83213 0.74729 0.77498 0.89558 0.85088 0.73168 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.10 12.88 -148.98 -1.92 -2.02 16 2 C -0.03 0.07 2.98 71.24 0.21 0.29 16 3 Si 0.76 -0.77 32.11 68.60 2.20 1.43 16 4 C -0.05 0.01 6.20 24.90 0.15 0.16 16 5 C -0.18 0.31 10.78 22.11 0.24 0.55 16 6 C -0.17 0.57 10.26 22.40 0.23 0.80 16 7 C 0.00 0.00 7.02 24.24 0.17 0.17 16 8 C 0.03 -0.03 5.87 -20.08 -0.12 -0.15 16 9 C -0.11 0.82 9.48 22.25 0.21 1.03 16 10 C -0.05 0.40 9.47 22.24 0.21 0.61 16 11 C -0.18 -0.02 5.89 -19.97 -0.12 -0.14 16 12 C 0.55 1.82 7.75 86.63 0.67 2.49 16 13 O -0.57 -7.61 14.74 16.87 0.25 -7.36 16 14 N -0.70 4.00 5.31 -443.13 -2.35 1.65 16 15 C 0.12 -0.49 4.24 45.58 0.19 -0.29 16 16 H 0.09 0.27 7.46 -2.39 -0.02 0.26 16 17 C -0.15 0.72 7.45 31.18 0.23 0.95 16 18 C -0.12 0.85 3.82 -10.27 -0.04 0.81 16 19 H 0.08 -0.01 7.94 -2.39 -0.02 -0.03 16 20 C 0.12 -1.23 6.28 86.37 0.54 -0.69 16 21 N -0.28 0.22 3.44 -347.73 -1.20 -0.98 16 22 C -0.03 0.13 11.57 83.49 0.97 1.09 16 23 C -0.07 -0.21 12.05 83.73 1.01 0.80 16 24 N -0.32 -3.87 12.41 -58.25 -0.72 -4.59 16 25 N -0.13 -1.20 12.78 37.02 0.47 -0.73 16 26 C -0.11 1.27 7.40 31.12 0.23 1.50 16 27 C 0.16 0.66 6.71 22.81 0.15 0.81 16 28 O -0.50 -3.73 11.56 -68.83 -0.80 -4.53 16 29 C -0.16 -0.36 9.65 22.61 0.22 -0.14 16 30 O -0.18 -0.42 8.79 -6.05 -0.05 -0.47 16 31 H 0.39 -1.73 8.70 -74.05 -0.64 -2.37 16 32 H 0.16 -1.01 7.96 -2.39 -0.02 -1.03 16 33 H -0.28 -1.23 7.11 99.48 0.71 -0.52 16 34 H -0.30 -1.84 7.11 99.48 0.71 -1.13 16 35 H 0.17 -0.75 8.06 -2.91 -0.02 -0.78 16 36 H 0.18 -1.82 7.24 -2.92 -0.02 -1.85 16 37 H 0.17 -2.44 6.95 -2.91 -0.02 -2.46 16 38 H 0.18 -3.10 6.38 -2.91 -0.02 -3.12 16 39 H 0.42 -5.99 6.73 -92.71 -0.62 -6.62 16 40 H 0.11 -1.15 7.92 -2.39 -0.02 -1.17 16 41 H 0.04 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.12 -1.46 8.14 -2.39 -0.02 -1.48 16 43 H 0.15 -2.81 7.80 -2.38 -0.02 -2.82 16 44 H 0.24 -3.40 8.06 -2.91 -0.02 -3.42 16 45 H 0.21 -0.66 8.06 -2.91 -0.02 -0.69 16 46 H 0.09 -0.90 8.14 -2.38 -0.02 -0.92 16 47 H 0.13 -2.46 8.08 -2.39 -0.02 -2.48 16 48 H 0.41 0.13 9.06 -74.06 -0.67 -0.54 16 49 H 0.13 0.38 7.90 -2.91 -0.02 0.36 16 Total: 0.00 -40.09 421.83 0.40 -39.69 By element: Atomic # 1 Polarization: -31.88 SS G_CDS: -0.85 Total: -32.73 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 5.37 Total: 10.64 kcal Atomic # 7 Polarization: -0.85 SS G_CDS: -3.80 Total: -4.65 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -2.52 Total: -14.38 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: 2.20 Total: 1.43 kcal Total: -40.09 0.40 -39.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_12807986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.932 kcal (2) G-P(sol) polarization free energy of solvation -40.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds