Wall clock time and date at job start Tue Mar 9 2021 13:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86305 * 109.46767 * 2 1 4 4 C 1.50697 * 109.47376 * 119.99954 * 2 1 3 5 5 C 1.34704 * 125.66427 * 65.01640 * 4 2 1 6 6 C 1.40968 * 107.02742 * 179.75381 * 5 4 2 7 7 C 1.35940 * 106.74294 * 0.34853 * 6 5 4 8 8 C 1.47820 * 125.92895 * 179.91168 * 7 6 5 9 9 C 1.39807 * 120.00143 * 359.72226 * 8 7 6 10 10 C 1.37803 * 120.24502 * 179.97438 * 9 8 7 11 11 C 1.38783 * 120.24445 * 0.02562 * 10 9 8 12 12 O 1.35651 * 120.00237 * 180.02562 * 11 10 9 13 13 C 1.40250 * 119.99232 * 0.02562 * 11 10 9 14 14 C 1.47566 * 120.11686 * 179.97438 * 13 11 10 15 15 O 1.21586 * 120.00067 * 0.02562 * 14 13 11 16 16 N 1.34776 * 119.99988 * 180.02562 * 14 13 11 17 17 C 1.46496 * 120.00015 * 180.02562 * 16 14 13 18 18 H 1.09004 * 112.90889 * 336.25053 * 17 16 14 19 19 C 1.53784 * 113.61524 * 107.50411 * 17 16 14 20 20 C 1.53778 * 87.08081 * 139.98080 * 19 17 16 21 21 H 1.09004 * 113.61886 * 89.12045 * 20 19 17 22 22 C 1.53003 * 113.68969 * 220.00869 * 20 19 17 23 23 N 1.46497 * 109.47017 * 272.53495 * 22 20 19 24 24 C 1.35318 * 125.86688 * 125.00073 * 23 22 20 25 25 C 1.35353 * 106.17476 * 179.97438 * 24 23 22 26 26 N 1.33773 * 106.49435 * 359.97438 * 25 24 23 27 27 N 1.28633 * 108.89014 * 359.73633 * 26 25 24 28 28 C 1.53778 * 87.08449 * 334.56700 * 20 19 17 29 29 C 1.39216 * 119.99791 * 180.02562 * 8 7 6 30 30 O 1.34348 * 125.66336 * 244.98455 * 4 2 1 31 31 H 0.96703 * 114.00533 * 300.00361 * 1 2 3 32 32 H 1.09000 * 109.47499 * 240.00418 * 2 1 3 33 33 H 1.48503 * 109.99872 * 178.68108 * 3 2 1 34 34 H 1.48503 * 110.00218 * 299.99685 * 3 2 1 35 35 H 1.07993 * 126.48457 * 359.97438 * 5 4 2 36 36 H 1.08006 * 126.63180 * 180.25089 * 6 5 4 37 37 H 1.08004 * 119.87574 * 0.02562 * 9 8 7 38 38 H 1.07997 * 119.87770 * 180.02562 * 10 9 8 39 39 H 0.96697 * 113.99449 * 270.01968 * 12 11 10 40 40 H 0.96998 * 119.99607 * 0.02562 * 16 14 13 41 41 H 1.08993 * 113.61313 * 254.52676 * 19 17 16 42 42 H 1.09000 * 113.61578 * 25.43408 * 19 17 16 43 43 H 1.08994 * 109.47311 * 32.53706 * 22 20 19 44 44 H 1.08999 * 109.47124 * 152.53650 * 22 20 19 45 45 H 1.07996 * 126.91289 * 359.97438 * 24 23 22 46 46 H 1.08000 * 126.75299 * 179.97438 * 25 24 23 47 47 H 1.08998 * 113.61879 * 270.88747 * 28 20 19 48 48 H 1.08999 * 113.61887 * 139.97854 * 28 20 19 49 49 H 1.07995 * 120.11794 * 359.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7574 -2.0167 1.5091 6 6 2.3870 -2.2623 2.7462 7 6 2.9091 -1.0779 3.1619 8 6 3.6606 -0.8533 4.4148 9 6 3.8829 -1.9152 5.2966 10 6 4.5833 -1.7116 6.4658 11 6 5.0728 -0.4508 6.7768 12 8 5.7621 -0.2560 7.9288 13 6 4.8548 0.6219 5.9000 14 6 5.3736 1.9638 6.2283 15 8 5.9917 2.1409 7.2603 16 7 5.1622 2.9931 5.3843 17 6 5.6777 4.3251 5.7099 18 1 5.8350 4.4696 6.7788 19 6 6.8787 4.7486 4.8478 20 6 6.2522 6.1524 4.8044 21 1 6.5666 6.7965 5.6257 22 6 6.3641 6.8335 3.4389 23 7 7.6375 7.5529 3.3550 24 6 8.5754 7.3949 2.3924 25 6 9.5795 8.2487 2.7005 26 7 9.2113 8.8793 3.8214 27 7 8.0535 8.4488 4.1803 28 6 4.8955 5.4686 5.0423 29 6 4.1416 0.4170 4.7197 30 8 2.6276 -0.1461 2.2313 31 1 -0.3934 0.4417 0.7650 32 1 1.7924 -0.5138 -0.8900 33 1 3.5345 1.7704 0.0321 34 1 1.5614 2.4680 -1.2085 35 1 1.2374 -2.7399 0.8985 36 1 2.4425 -3.2082 3.2646 37 1 3.5049 -2.8989 5.0602 38 1 4.7519 -2.5362 7.1425 39 1 5.2077 -0.0104 8.6821 40 1 4.6688 2.8518 4.5612 41 1 7.8307 4.7116 5.3770 42 1 6.9139 4.2560 3.8760 43 1 6.3197 6.0803 2.6524 44 1 5.5407 7.5369 3.3152 45 1 8.5316 6.7228 1.5482 46 1 10.4973 8.3926 2.1498 47 1 4.3886 5.1727 4.1238 48 1 4.2467 6.0126 5.7286 49 1 3.9672 1.2396 4.0421 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_13259648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:26:13 Heat of formation + Delta-G solvation = 71.307980 kcal Electronic energy + Delta-G solvation = -35973.808054 eV Core-core repulsion = 31066.171191 eV Total energy + Delta-G solvation = -4907.636863 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.152 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -44.16481 -43.68158 -41.69901 -40.53226 -39.13745 -38.08947 -37.76461 -35.79201 -34.54429 -34.09463 -32.73522 -32.27501 -31.94772 -30.03590 -29.44368 -26.77943 -26.36750 -25.83128 -24.43262 -23.64673 -23.44602 -22.90568 -22.26453 -21.66119 -21.31554 -20.63890 -19.57090 -19.11330 -18.64452 -18.25094 -17.79564 -17.53087 -17.36445 -16.97895 -16.74680 -16.47331 -16.29941 -16.17671 -15.89302 -15.79140 -15.69049 -15.41393 -15.01076 -14.74706 -14.60249 -14.42921 -14.28662 -13.95513 -13.86128 -13.63489 -13.56306 -13.47858 -13.20863 -13.11668 -13.01441 -12.74953 -12.68892 -12.37287 -12.16453 -12.03705 -11.87528 -11.80154 -11.57552 -11.05043 -10.99863 -10.83364 -10.62883 -10.45175 -10.32771 -10.30801 -10.03596 -8.89452 -4.99020 -0.55627 -0.19610 0.69212 0.78336 1.20046 1.45505 1.50948 1.52388 1.62781 1.79320 1.87006 1.95729 2.04432 2.63241 3.11851 3.25288 3.31970 3.38462 3.42017 3.50323 3.56217 3.66045 3.68930 3.75852 3.92229 4.00201 4.02429 4.04963 4.10779 4.22027 4.30183 4.33593 4.34609 4.40358 4.41825 4.60608 4.65104 4.66475 4.68917 4.75342 4.80441 4.83321 4.88936 4.94819 5.02923 5.03193 5.13992 5.18003 5.22125 5.27669 5.44356 5.50554 5.52481 5.72355 5.99882 6.44601 6.65172 6.72143 7.14246 7.54244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.036 4.036 3 Si 0.787 3.213 4 C -0.053 4.053 5 C -0.186 4.186 6 C -0.193 4.193 7 C 0.026 3.974 8 C -0.041 4.041 9 C -0.046 4.046 10 C -0.149 4.149 11 C 0.161 3.839 12 O -0.497 6.497 13 C -0.179 4.179 14 C 0.556 3.444 15 O -0.563 6.563 16 N -0.701 5.701 17 C 0.118 3.882 18 H 0.090 0.910 19 C -0.147 4.147 20 C -0.119 4.119 21 H 0.085 0.915 22 C 0.119 3.881 23 N -0.283 5.283 24 C -0.035 4.035 25 C -0.074 4.074 26 N -0.323 5.323 27 N -0.126 5.126 28 C -0.112 4.112 29 C -0.047 4.047 30 O -0.167 6.167 31 H 0.399 0.601 32 H 0.132 0.868 33 H -0.282 1.282 34 H -0.284 1.284 35 H 0.158 0.842 36 H 0.171 0.829 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.410 0.590 40 H 0.415 0.585 41 H 0.043 0.957 42 H 0.110 0.890 43 H 0.147 0.853 44 H 0.119 0.881 45 H 0.234 0.766 46 H 0.208 0.792 47 H 0.129 0.871 48 H 0.089 0.911 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.016 -4.571 -5.617 10.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.146 4.146 3 Si 0.690 3.310 4 C -0.103 4.103 5 C -0.206 4.206 6 C -0.212 4.212 7 C -0.023 4.023 8 C -0.041 4.041 9 C -0.064 4.064 10 C -0.167 4.167 11 C 0.114 3.886 12 O -0.311 6.311 13 C -0.183 4.183 14 C 0.344 3.656 15 O -0.443 6.443 16 N -0.354 5.354 17 C 0.013 3.987 18 H 0.108 0.892 19 C -0.185 4.185 20 C -0.139 4.139 21 H 0.103 0.897 22 C -0.001 4.001 23 N -0.078 5.078 24 C -0.186 4.186 25 C -0.232 4.232 26 N -0.188 5.188 27 N -0.105 5.105 28 C -0.150 4.150 29 C -0.065 4.065 30 O -0.065 6.065 31 H 0.250 0.750 32 H 0.149 0.851 33 H -0.208 1.208 34 H -0.211 1.211 35 H 0.175 0.825 36 H 0.189 0.811 37 H 0.180 0.820 38 H 0.178 0.822 39 H 0.271 0.729 40 H 0.254 0.746 41 H 0.062 0.938 42 H 0.128 0.872 43 H 0.165 0.835 44 H 0.137 0.863 45 H 0.251 0.749 46 H 0.225 0.775 47 H 0.147 0.853 48 H 0.108 0.892 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.816 -3.183 -4.852 8.952 hybrid contribution 0.116 -1.409 -0.829 1.640 sum -6.700 -4.593 -5.682 9.913 Atomic orbital electron populations 1.86540 1.16195 1.82206 1.50299 1.24628 0.85317 1.12190 0.92455 0.93389 0.78031 0.74537 0.85000 1.23112 1.00754 0.94034 0.92403 1.21788 1.04148 0.96148 0.98470 1.22146 1.02316 0.99153 0.97544 1.20376 1.03404 0.87635 0.90922 1.17676 1.00437 0.94531 0.91469 1.21407 0.94498 0.99296 0.91213 1.21554 0.98991 0.96960 0.99191 1.18934 0.89836 0.91894 0.87894 1.84710 1.36454 1.91153 1.18736 1.20256 1.05590 0.93636 0.98771 1.18327 0.79044 0.84836 0.83351 1.90821 1.41757 1.84769 1.26915 1.45757 1.57194 1.08046 1.24380 1.22422 0.95418 0.81105 0.99770 0.89188 1.23622 0.97624 0.95644 1.01655 1.22567 0.99152 0.95298 0.96904 0.89685 1.22609 0.80431 0.97054 0.99976 1.47845 1.17236 1.25889 1.16797 1.24387 0.90132 1.05500 0.98623 1.24218 1.03415 0.98882 0.96665 1.75082 1.05607 1.23861 1.14231 1.78216 1.08560 1.05981 1.17753 1.23328 0.95009 0.93772 1.02913 1.21436 0.93321 0.97327 0.94424 1.83879 1.58004 1.38006 1.26561 0.75010 0.85132 1.20841 1.21125 0.82458 0.81127 0.81978 0.82186 0.72928 0.74568 0.93766 0.87213 0.83535 0.86282 0.74939 0.77482 0.85269 0.89245 0.82506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.48 12.88 -148.98 -1.92 0.56 16 2 C -0.04 0.19 2.98 71.24 0.21 0.40 16 3 Si 0.79 -5.69 32.11 68.60 2.20 -3.49 16 4 C -0.05 0.15 6.20 24.87 0.15 0.30 16 5 C -0.19 0.34 10.78 22.13 0.24 0.58 16 6 C -0.19 0.57 10.26 22.40 0.23 0.80 16 7 C 0.03 -0.06 7.03 24.27 0.17 0.11 16 8 C -0.04 0.14 5.87 -20.13 -0.12 0.02 16 9 C -0.05 0.24 9.54 22.55 0.22 0.45 16 10 C -0.15 0.47 9.96 22.30 0.22 0.69 16 11 C 0.16 0.29 6.72 22.89 0.15 0.45 16 12 O -0.50 -2.39 11.55 -68.67 -0.79 -3.18 16 13 C -0.18 -0.15 5.88 -20.04 -0.12 -0.26 16 14 C 0.56 2.19 7.76 86.70 0.67 2.86 16 15 O -0.56 -7.27 14.74 17.00 0.25 -7.02 16 16 N -0.70 2.84 5.30 -443.16 -2.35 0.49 16 17 C 0.12 -0.41 4.24 45.52 0.19 -0.21 16 18 H 0.09 0.28 7.47 -2.39 -0.02 0.27 16 19 C -0.15 0.60 7.43 31.12 0.23 0.83 16 20 C -0.12 0.77 3.83 -10.27 -0.04 0.73 16 21 H 0.08 0.00 7.92 -2.38 -0.02 -0.02 16 22 C 0.12 -1.12 6.29 86.38 0.54 -0.58 16 23 N -0.28 0.02 3.44 -347.74 -1.20 -1.17 16 24 C -0.03 0.10 11.57 83.49 0.97 1.07 16 25 C -0.07 -0.24 12.05 83.73 1.01 0.77 16 26 N -0.32 -3.94 12.41 -58.25 -0.72 -4.66 16 27 N -0.13 -1.22 12.77 37.02 0.47 -0.75 16 28 C -0.11 1.21 7.39 31.12 0.23 1.44 16 29 C -0.05 0.18 9.20 22.79 0.21 0.39 16 30 O -0.17 0.48 8.80 -6.57 -0.06 0.43 16 31 H 0.40 -4.96 8.70 -74.06 -0.64 -5.61 16 32 H 0.13 -0.67 7.96 -2.39 -0.02 -0.69 16 33 H -0.28 0.63 7.11 99.48 0.71 1.34 16 34 H -0.28 0.26 7.11 99.48 0.71 0.97 16 35 H 0.16 -0.51 8.06 -2.91 -0.02 -0.53 16 36 H 0.17 -1.26 7.25 -2.91 -0.02 -1.28 16 37 H 0.16 -1.65 6.96 -2.91 -0.02 -1.67 16 38 H 0.16 -1.07 8.06 -2.91 -0.02 -1.09 16 39 H 0.41 -0.95 9.06 -74.06 -0.67 -1.62 16 40 H 0.42 -4.59 6.75 -92.71 -0.63 -5.22 16 41 H 0.04 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.11 -0.94 7.90 -2.39 -0.02 -0.96 16 43 H 0.15 -2.52 7.78 -2.39 -0.02 -2.54 16 44 H 0.12 -1.41 8.14 -2.39 -0.02 -1.43 16 45 H 0.23 -3.09 8.06 -2.91 -0.02 -3.11 16 46 H 0.21 -0.57 8.06 -2.91 -0.02 -0.59 16 47 H 0.13 -2.27 8.08 -2.39 -0.02 -2.29 16 48 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H 0.16 -1.50 6.24 -2.91 -0.02 -1.52 16 Total: 0.00 -36.79 421.92 0.41 -36.37 By element: Atomic # 1 Polarization: -27.56 SS G_CDS: -0.85 Total: -28.41 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 5.38 Total: 10.84 kcal Atomic # 7 Polarization: -2.30 SS G_CDS: -3.80 Total: -6.09 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -2.52 Total: -9.21 kcal Atomic # 14 Polarization: -5.69 SS G_CDS: 2.20 Total: -3.49 kcal Total: -36.79 0.41 -36.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_13259648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.680 kcal (2) G-P(sol) polarization free energy of solvation -36.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds