Wall clock time and date at job start Tue Mar 9 2021 13:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38980 * 119.95396 * 2 1 4 4 O 1.35710 * 119.91325 * 359.97438 * 3 2 1 5 5 C 1.39023 * 120.17356 * 179.97438 * 3 2 1 6 6 C 1.50698 * 119.95416 * 179.97438 * 5 3 2 7 7 O 1.42904 * 109.47131 * 75.01660 * 6 5 3 8 8 Si 1.86300 * 109.47317 * 195.01609 * 6 5 3 9 9 C 1.37674 * 120.09024 * 0.02562 * 5 3 2 10 10 C 1.39755 * 119.91312 * 0.02562 * 9 5 3 11 11 C 1.47602 * 120.09269 * 179.72232 * 10 9 5 12 12 O 1.21591 * 119.99669 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00244 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99679 * 180.02562 * 13 11 10 15 15 H 1.08996 * 112.85060 * 23.79980 * 14 13 11 16 16 C 1.53784 * 113.61440 * 155.00226 * 14 13 11 17 17 C 1.53783 * 87.08310 * 139.97487 * 16 14 13 18 18 H 1.09003 * 113.61017 * 89.11593 * 17 16 14 19 19 C 1.52997 * 113.61425 * 219.93131 * 17 16 14 20 20 N 1.46504 * 109.47012 * 185.00115 * 19 17 16 21 21 C 1.35309 * 125.86694 * 125.00095 * 20 19 17 22 22 C 1.35348 * 106.17554 * 179.97438 * 21 20 19 23 23 N 1.33769 * 106.49729 * 0.02562 * 22 21 20 24 24 N 1.28640 * 108.88734 * 359.73181 * 23 22 21 25 25 C 1.53782 * 87.07955 * 334.56667 * 17 16 14 26 26 C 1.37722 * 119.95872 * 180.02562 * 2 1 3 27 27 H 1.08992 * 109.47178 * 90.00453 * 1 2 3 28 28 H 1.09000 * 109.46718 * 210.00661 * 1 2 3 29 29 H 1.09006 * 109.46856 * 329.99917 * 1 2 3 30 30 H 0.96702 * 113.99766 * 269.98635 * 4 3 2 31 31 H 1.08997 * 109.47243 * 315.02272 * 6 5 3 32 32 H 0.96700 * 113.99985 * 299.99712 * 7 6 5 33 33 H 1.48495 * 109.99991 * 298.68605 * 8 6 5 34 34 H 1.48506 * 109.99689 * 60.00099 * 8 6 5 35 35 H 1.08006 * 120.04591 * 179.97438 * 9 5 3 36 36 H 0.96997 * 120.00255 * 359.97438 * 13 11 10 37 37 H 1.08998 * 113.61238 * 254.52725 * 16 14 13 38 38 H 1.09004 * 113.61164 * 25.34447 * 16 14 13 39 39 H 1.08992 * 109.47369 * 305.00477 * 19 17 16 40 40 H 1.09003 * 109.46765 * 65.00177 * 19 17 16 41 41 H 1.08003 * 126.91167 * 0.02562 * 21 20 19 42 42 H 1.07995 * 126.75351 * 179.97438 * 22 21 20 43 43 H 1.09001 * 113.61298 * 270.87976 * 25 17 16 44 44 H 1.09002 * 113.60904 * 139.98029 * 25 17 16 45 45 H 1.08007 * 120.04245 * 359.97302 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2042 0.0000 4 8 1.5197 2.3779 -0.0005 5 6 3.5912 1.2095 0.0005 6 6 4.3386 2.5180 0.0000 7 8 4.2719 3.1053 1.3010 8 14 6.1199 2.2156 -0.4542 9 6 4.2860 0.0209 0.0005 10 6 3.5919 -1.1921 -0.0005 11 6 4.3328 -2.4687 -0.0067 12 8 5.5487 -2.4658 -0.0104 13 7 3.6617 -3.6374 -0.0083 14 6 4.3972 -4.9044 -0.0139 15 1 5.4056 -4.8102 0.3891 16 6 3.6036 -6.0800 0.5803 17 6 4.1904 -6.9442 -0.5483 18 1 5.1428 -7.4086 -0.2924 19 6 3.1886 -7.9338 -1.1465 20 7 3.8692 -8.7872 -2.1236 21 6 3.8914 -10.1401 -2.1151 22 6 4.6270 -10.5118 -3.1888 23 7 5.0142 -9.3830 -3.7932 24 7 4.5445 -8.3789 -3.1405 25 6 4.3363 -5.6460 -1.3597 26 6 2.1948 -1.1932 -0.0005 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.3228 2.7179 -0.8841 31 1 3.8879 3.1936 -0.7270 32 1 3.3722 3.2908 1.6032 33 1 6.7545 1.3213 0.5470 34 1 6.2029 1.6050 -1.8054 35 1 5.3660 0.0259 0.0005 36 1 2.6917 -3.6397 -0.0050 37 1 3.9385 -6.3745 1.5749 38 1 2.5228 -5.9531 0.5179 39 1 2.7707 -8.5525 -0.3524 40 1 2.3863 -7.3851 -1.6398 41 1 3.4169 -10.7922 -1.3967 42 1 4.8569 -11.5212 -3.4965 43 1 3.4558 -5.4012 -1.9538 44 1 5.2627 -5.5902 -1.9313 45 1 1.6548 -2.1286 -0.0005 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_13287732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:26:27 Heat of formation + Delta-G solvation = 38.772837 kcal Electronic energy + Delta-G solvation = -29334.741066 eV Core-core repulsion = 25129.053987 eV Total energy + Delta-G solvation = -4205.687080 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.17527 -41.95527 -41.02022 -39.69906 -37.77912 -37.64718 -35.91073 -34.57411 -34.06373 -31.96565 -31.87648 -29.51733 -28.10132 -26.96577 -26.81578 -25.71129 -24.04684 -23.50736 -22.41206 -22.16558 -21.71287 -20.78146 -19.65773 -18.91239 -18.70702 -18.06973 -17.91964 -17.33202 -16.91683 -16.81297 -16.34038 -16.18714 -16.04098 -15.78526 -15.50481 -15.31589 -15.23165 -15.10593 -14.42757 -14.31184 -13.96642 -13.80327 -13.78687 -13.53148 -13.44321 -13.24922 -12.98365 -12.86881 -12.64838 -12.44982 -12.36951 -12.29138 -12.06039 -11.95792 -11.50310 -11.36435 -11.20537 -11.10659 -11.01539 -10.33522 -10.32283 -10.08958 -9.79271 -4.98618 -0.56547 -0.08275 0.68205 1.21926 1.42763 1.50150 1.52265 1.62144 1.87028 1.91140 2.40116 2.94713 3.23881 3.29370 3.35799 3.40431 3.46758 3.57126 3.60968 3.70052 3.77699 3.90286 3.97107 3.98693 4.10976 4.20635 4.28115 4.31532 4.33450 4.34365 4.47824 4.59830 4.61838 4.63273 4.72502 4.78266 4.81647 4.88073 4.89321 4.94814 4.98772 5.05728 5.12603 5.20415 5.26615 5.40747 5.50048 5.71646 6.29731 6.57609 6.61715 6.96305 7.53925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.112 4.112 3 C 0.155 3.845 4 O -0.490 6.490 5 C -0.156 4.156 6 C -0.070 4.070 7 O -0.546 6.546 8 Si 0.798 3.202 9 C -0.083 4.083 10 C -0.153 4.153 11 C 0.555 3.445 12 O -0.588 6.588 13 N -0.693 5.693 14 C 0.109 3.891 15 H 0.087 0.913 16 C -0.107 4.107 17 C -0.113 4.113 18 H 0.086 0.914 19 C 0.119 3.881 20 N -0.287 5.287 21 C -0.034 4.034 22 C -0.074 4.074 23 N -0.326 5.326 24 N -0.123 5.123 25 C -0.141 4.141 26 C -0.055 4.055 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.417 0.583 31 H 0.106 0.894 32 H 0.379 0.621 33 H -0.307 1.307 34 H -0.273 1.273 35 H 0.108 0.892 36 H 0.419 0.581 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.237 0.763 42 H 0.209 0.791 43 H 0.101 0.899 44 H 0.043 0.957 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.574 -1.462 3.078 13.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.112 4.112 3 C 0.109 3.891 4 O -0.304 6.304 5 C -0.157 4.157 6 C -0.180 4.180 7 O -0.354 6.354 8 Si 0.704 3.296 9 C -0.102 4.102 10 C -0.156 4.156 11 C 0.343 3.657 12 O -0.470 6.470 13 N -0.344 5.344 14 C 0.004 3.996 15 H 0.105 0.895 16 C -0.145 4.145 17 C -0.133 4.133 18 H 0.104 0.896 19 C 0.000 4.000 20 N -0.081 5.081 21 C -0.185 4.185 22 C -0.232 4.232 23 N -0.191 5.191 24 N -0.102 5.102 25 C -0.180 4.180 26 C -0.073 4.073 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.279 0.721 31 H 0.124 0.876 32 H 0.229 0.771 33 H -0.236 1.236 34 H -0.200 1.200 35 H 0.126 0.874 36 H 0.259 0.741 37 H 0.112 0.888 38 H 0.146 0.854 39 H 0.170 0.830 40 H 0.135 0.865 41 H 0.254 0.746 42 H 0.226 0.774 43 H 0.119 0.881 44 H 0.062 0.938 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.995 -0.885 2.631 10.374 hybrid contribution -1.338 -1.437 0.129 1.968 sum -11.333 -2.322 2.760 11.893 Atomic orbital electron populations 1.20800 0.87313 1.04601 1.03976 1.20543 0.98766 0.91458 1.00477 1.18316 0.87860 0.86521 0.96427 1.84665 1.75123 1.34932 1.35709 1.20754 0.94661 0.95829 1.04465 1.25064 1.12194 0.91420 0.89310 1.86703 1.34002 1.82557 1.32102 0.92816 0.75993 0.84923 0.75865 1.20987 0.99287 0.92352 0.97593 1.19865 0.94973 0.92242 1.08493 1.18515 0.86753 0.85065 0.75340 1.90794 1.15895 1.88267 1.52022 1.45691 1.10912 1.04244 1.73596 1.22590 0.97344 0.81692 0.97936 0.89453 1.23302 1.02089 0.90922 0.98209 1.22501 0.99433 0.93831 0.97549 0.89574 1.22592 0.94169 0.93181 0.90045 1.47884 1.33768 1.07195 1.19261 1.24439 1.05595 0.84703 1.03765 1.24237 1.02521 0.99988 0.96481 1.75096 1.20979 0.97892 1.25124 1.78281 1.10910 1.22552 0.98447 1.23529 1.02742 0.95193 0.96551 1.21423 0.90882 0.99725 0.95290 0.89308 0.89408 0.90569 0.72131 0.87647 0.77125 1.23623 1.19994 0.87404 0.74129 0.88773 0.85353 0.82990 0.86519 0.74645 0.77429 0.88072 0.93811 0.81170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.99 9.78 71.24 0.70 1.69 16 2 C -0.11 0.38 5.89 -19.81 -0.12 0.26 16 3 C 0.15 -0.12 6.62 22.64 0.15 0.03 16 4 O -0.49 2.78 11.41 -90.31 -1.03 1.75 16 5 C -0.16 -0.71 5.27 -19.81 -0.10 -0.82 16 6 C -0.07 -0.17 2.33 71.24 0.17 -0.01 16 7 O -0.55 -2.42 12.65 -148.98 -1.89 -4.30 16 8 Si 0.80 4.37 30.40 68.60 2.09 6.46 16 9 C -0.08 -0.83 8.20 22.50 0.18 -0.64 16 10 C -0.15 -0.87 5.88 -20.08 -0.12 -0.99 16 11 C 0.55 4.79 7.76 86.72 0.67 5.47 16 12 O -0.59 -11.41 15.94 -4.00 -0.06 -11.47 16 13 N -0.69 0.90 5.30 -443.12 -2.35 -1.45 16 14 C 0.11 -0.12 4.24 45.52 0.19 0.08 16 15 H 0.09 0.51 7.46 -2.39 -0.02 0.49 16 16 C -0.11 1.13 7.39 31.12 0.23 1.36 16 17 C -0.11 0.73 3.76 -10.27 -0.04 0.70 16 18 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 19 C 0.12 -1.20 6.29 86.38 0.54 -0.66 16 20 N -0.29 0.17 3.44 -347.74 -1.20 -1.02 16 21 C -0.03 0.13 11.57 83.49 0.97 1.09 16 22 C -0.07 -0.20 12.05 83.73 1.01 0.81 16 23 N -0.33 -3.92 12.41 -58.26 -0.72 -4.65 16 24 N -0.12 -1.16 12.94 37.02 0.48 -0.68 16 25 C -0.14 0.11 7.43 31.12 0.23 0.34 16 26 C -0.05 0.16 9.18 22.50 0.21 0.37 16 27 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 28 H 0.09 -1.02 8.08 -2.39 -0.02 -1.04 16 29 H 0.08 -0.58 7.52 -2.38 -0.02 -0.59 16 30 H 0.42 -5.95 9.06 -74.06 -0.67 -6.62 16 31 H 0.11 -0.40 7.82 -2.39 -0.02 -0.42 16 32 H 0.38 -0.21 8.60 -74.06 -0.64 -0.84 16 33 H -0.31 -4.68 6.81 99.48 0.68 -4.00 16 34 H -0.27 -2.54 7.11 99.48 0.71 -1.83 16 35 H 0.11 1.68 4.51 -2.91 -0.01 1.67 16 36 H 0.42 -4.11 6.75 -92.71 -0.63 -4.73 16 37 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 38 H 0.13 -2.19 8.08 -2.39 -0.02 -2.21 16 39 H 0.15 -2.75 8.07 -2.39 -0.02 -2.77 16 40 H 0.12 -1.46 7.85 -2.39 -0.02 -1.48 16 41 H 0.24 -3.40 8.06 -2.91 -0.02 -3.42 16 42 H 0.21 -0.69 8.06 -2.91 -0.02 -0.72 16 43 H 0.10 -0.34 7.90 -2.39 -0.02 -0.35 16 44 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.17 -1.97 6.39 -2.91 -0.02 -1.99 16 Total: 0.00 -38.50 378.83 -0.67 -39.17 By element: Atomic # 1 Polarization: -32.01 SS G_CDS: -0.86 Total: -32.87 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 4.87 Total: 9.07 kcal Atomic # 7 Polarization: -4.01 SS G_CDS: -3.79 Total: -7.80 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -2.98 Total: -14.03 kcal Atomic # 14 Polarization: 4.37 SS G_CDS: 2.09 Total: 6.46 kcal Total: -38.50 -0.67 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_13287732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.942 kcal (2) G-P(sol) polarization free energy of solvation -38.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds