Wall clock time and date at job start Tue Mar 9 2021 13:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36414 * 125.80285 * 2 1 4 4 C 1.47379 * 127.19505 * 0.02562 * 3 2 1 5 5 O 1.21615 * 119.99344 * 359.71541 * 4 3 2 6 6 N 1.34771 * 120.00359 * 179.71490 * 4 3 2 7 7 C 1.46494 * 120.00105 * 180.02562 * 6 4 3 8 8 H 1.09002 * 112.85104 * 23.79460 * 7 6 4 9 9 C 1.53784 * 113.61723 * 154.99906 * 7 6 4 10 10 C 1.53780 * 87.08191 * 139.97783 * 9 7 6 11 11 H 1.08993 * 113.61660 * 89.19874 * 10 9 7 12 12 C 1.53000 * 113.61256 * 220.01837 * 10 9 7 13 13 N 1.46496 * 109.47114 * 183.46912 * 12 10 9 14 14 C 1.35314 * 125.86616 * 124.99942 * 13 12 10 15 15 C 1.35358 * 106.17498 * 180.02562 * 14 13 12 16 16 N 1.33767 * 106.49287 * 0.26477 * 15 14 13 17 17 N 1.28632 * 108.88855 * 359.56308 * 16 15 14 18 18 C 1.53782 * 87.17517 * 334.60692 * 10 9 7 19 19 C 1.47025 * 105.61218 * 179.75349 * 3 2 1 20 20 C 1.34177 * 105.95538 * 0.21944 * 19 3 2 21 21 C 1.50700 * 125.43289 * 180.02562 * 20 19 3 22 22 O 1.42893 * 109.47260 * 299.99917 * 21 20 19 23 23 Si 1.86309 * 109.46644 * 180.02562 * 21 20 19 24 24 O 1.33651 * 125.79846 * 180.13471 * 2 1 3 25 25 H 1.08999 * 109.47388 * 90.00097 * 1 2 3 26 26 H 1.09001 * 109.47331 * 210.00850 * 1 2 3 27 27 H 1.09005 * 109.46892 * 329.99975 * 1 2 3 28 28 H 0.96998 * 119.99917 * 359.97438 * 6 4 3 29 29 H 1.09001 * 113.61250 * 25.42383 * 9 7 6 30 30 H 1.08998 * 113.61373 * 254.52480 * 9 7 6 31 31 H 1.09006 * 109.47400 * 63.46960 * 12 10 9 32 32 H 1.08998 * 109.47134 * 303.47317 * 12 10 9 33 33 H 1.08004 * 126.91628 * 0.06220 * 14 13 12 34 34 H 1.08002 * 126.74926 * 179.97438 * 15 14 13 35 35 H 1.09001 * 113.61706 * 139.93680 * 18 10 9 36 36 H 1.09002 * 113.61588 * 270.84691 * 18 10 9 37 37 H 1.08004 * 127.01965 * 180.20505 * 19 3 2 38 38 H 1.09001 * 109.47185 * 60.00165 * 21 20 19 39 39 H 0.96701 * 114.00031 * 300.00183 * 22 21 20 40 40 H 1.48504 * 109.99832 * 179.97438 * 23 21 20 41 41 H 1.48498 * 109.99900 * 301.31644 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8741 2.5157 0.0005 5 8 0.6891 2.7891 -0.0042 6 7 2.7931 3.5015 0.0063 7 6 2.3647 4.9024 0.0073 8 1 1.3603 5.0376 0.4088 9 6 3.4032 5.8638 0.6090 10 6 3.0305 6.8447 -0.5151 11 1 2.2089 7.5128 -0.2570 12 6 4.2325 7.5827 -1.1081 13 7 3.7683 8.5482 -2.1073 14 6 4.0416 9.8734 -2.1159 15 6 3.4192 10.3797 -3.2061 16 7 2.7989 9.3540 -3.7998 17 7 3.0299 8.2820 -3.1273 18 6 2.5937 5.6197 -1.3356 19 6 3.6849 0.5989 0.0061 20 6 3.5858 -0.7392 0.0042 21 6 4.7459 -1.7012 0.0093 22 8 5.5486 -1.4855 -1.1530 23 14 4.1025 -3.4496 0.0033 24 8 2.2888 -1.0840 -0.0025 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5140 27 1 -0.3633 0.8900 0.5139 28 1 3.7382 3.2834 0.0104 29 1 4.4273 5.4956 0.5456 30 1 3.1418 6.2213 1.6050 31 1 4.9027 6.8646 -1.5807 32 1 4.7640 8.1079 -0.3146 33 1 4.6372 10.4177 -1.3979 34 1 3.4192 11.4100 -3.5300 35 1 1.6796 5.7803 -1.9073 36 1 3.3960 5.1847 -1.9316 37 1 4.5929 1.1838 0.0109 38 1 5.3488 -1.5385 0.9026 39 1 5.0758 -1.6131 -1.9868 40 1 5.2368 -4.4082 0.0076 41 1 3.2399 -3.6775 1.1903 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_13308374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:26:40 Heat of formation + Delta-G solvation = 76.654725 kcal Electronic energy + Delta-G solvation = -25904.803649 eV Core-core repulsion = 21984.523010 eV Total energy + Delta-G solvation = -3920.280638 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.14928 -43.78329 -41.13541 -39.49632 -38.00495 -35.80631 -34.58615 -33.84872 -33.04939 -31.92210 -29.78637 -29.18894 -26.75724 -26.19445 -24.98374 -23.85007 -23.47580 -22.52629 -21.72331 -21.33802 -20.30748 -18.91000 -18.61505 -17.96619 -17.70597 -17.45781 -16.92160 -16.73577 -16.22168 -16.05933 -15.83703 -15.79730 -15.61261 -15.22954 -14.85314 -14.31071 -14.27575 -14.25862 -14.00703 -13.84922 -13.67623 -13.47727 -13.15452 -12.89130 -12.77560 -12.61366 -12.31096 -12.23685 -11.99458 -11.92288 -11.42670 -11.13620 -10.99144 -10.94939 -10.62317 -10.30632 -10.10842 -9.58457 -5.00842 0.20656 0.70862 0.81877 1.17504 1.38907 1.52687 1.64712 1.75393 1.90370 2.15804 2.21279 3.20823 3.29799 3.42327 3.46418 3.56875 3.64681 3.71464 3.76297 3.79242 4.01850 4.09363 4.15719 4.25871 4.31278 4.34749 4.36685 4.45317 4.57307 4.61100 4.67249 4.68856 4.77183 4.79384 4.84751 4.96150 5.03613 5.09918 5.19100 5.20869 5.29360 5.52564 5.73918 5.88367 6.47577 6.61364 7.14796 7.56703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.083 3.917 3 C -0.269 4.269 4 C 0.587 3.413 5 O -0.578 6.578 6 N -0.699 5.699 7 C 0.115 3.885 8 H 0.093 0.907 9 C -0.110 4.110 10 C -0.113 4.113 11 H 0.089 0.911 12 C 0.119 3.881 13 N -0.286 5.286 14 C -0.035 4.035 15 C -0.074 4.074 16 N -0.325 5.325 17 N -0.121 5.121 18 C -0.140 4.140 19 C -0.145 4.145 20 C -0.061 4.061 21 C -0.021 4.021 22 O -0.539 6.539 23 Si 0.771 3.229 24 O -0.172 6.172 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.415 0.585 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.150 0.850 33 H 0.236 0.764 34 H 0.209 0.791 35 H 0.046 0.954 36 H 0.094 0.906 37 H 0.180 0.820 38 H 0.141 0.859 39 H 0.400 0.600 40 H -0.279 1.279 41 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 0.505 4.049 7.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.030 3.970 3 C -0.274 4.274 4 C 0.377 3.623 5 O -0.459 6.459 6 N -0.349 5.349 7 C 0.010 3.990 8 H 0.111 0.889 9 C -0.149 4.149 10 C -0.133 4.133 11 H 0.107 0.893 12 C -0.001 4.001 13 N -0.081 5.081 14 C -0.186 4.186 15 C -0.232 4.232 16 N -0.190 5.190 17 N -0.100 5.100 18 C -0.179 4.179 19 C -0.164 4.164 20 C -0.109 4.109 21 C -0.132 4.132 22 O -0.347 6.347 23 Si 0.676 3.324 24 O -0.070 6.070 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.252 0.748 29 H 0.139 0.861 30 H 0.112 0.888 31 H 0.132 0.868 32 H 0.168 0.832 33 H 0.252 0.748 34 H 0.226 0.774 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.198 0.802 38 H 0.158 0.842 39 H 0.251 0.749 40 H -0.205 1.205 41 H -0.223 1.223 Dipole moment (debyes) X Y Z Total from point charges 5.472 -1.375 4.131 6.993 hybrid contribution 0.779 1.415 0.731 1.773 sum 6.251 0.040 4.863 7.919 Atomic orbital electron populations 1.20696 0.82780 1.05357 1.05280 1.23210 0.94739 0.83103 0.95954 1.21231 0.94353 0.93431 1.18341 1.17449 0.85313 0.84604 0.74979 1.90761 1.18207 1.84599 1.52374 1.45627 1.09928 1.05207 1.74184 1.22553 0.99959 0.78987 0.97463 0.88863 1.23287 1.00289 0.93055 0.98242 1.22511 0.97729 0.95494 0.97569 0.89288 1.22580 0.96850 0.91344 0.89290 1.47872 1.32403 1.08955 1.18846 1.24434 1.06320 0.84305 1.03575 1.24232 1.01147 1.01465 0.96342 1.75093 1.21620 0.97254 1.25065 1.78276 1.12380 1.21382 0.97951 1.23524 1.01913 0.95803 0.96674 1.22792 0.96297 0.93590 1.03756 1.22944 0.82836 0.96119 1.09012 1.24409 0.89232 1.06731 0.92780 1.86528 1.38629 1.93313 1.16206 0.93269 0.78971 0.72717 0.87426 1.83673 1.16848 1.34977 1.71468 0.88159 0.88430 0.88704 0.74751 0.86113 0.88783 0.86830 0.83210 0.74757 0.77422 0.93482 0.88722 0.80244 0.84216 0.74949 1.20530 1.22285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.09 9.89 71.24 0.70 0.61 16 2 C 0.08 0.31 7.37 25.26 0.19 0.50 16 3 C -0.27 -1.01 6.31 -18.99 -0.12 -1.13 16 4 C 0.59 3.55 7.81 86.65 0.68 4.23 16 5 O -0.58 -7.66 14.45 -4.08 -0.06 -7.72 16 6 N -0.70 0.87 5.35 -443.06 -2.37 -1.50 16 7 C 0.12 -0.20 4.24 45.58 0.19 0.00 16 8 H 0.09 0.35 7.46 -2.39 -0.02 0.33 16 9 C -0.11 1.10 7.40 31.12 0.23 1.33 16 10 C -0.11 0.72 3.75 -10.27 -0.04 0.68 16 11 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 12 C 0.12 -1.10 6.28 86.38 0.54 -0.56 16 13 N -0.29 0.09 3.44 -347.73 -1.20 -1.10 16 14 C -0.03 0.12 11.57 83.49 0.97 1.09 16 15 C -0.07 -0.20 12.05 83.73 1.01 0.81 16 16 N -0.33 -3.87 12.41 -58.25 -0.72 -4.59 16 17 N -0.12 -1.13 12.88 37.02 0.48 -0.66 16 18 C -0.14 0.12 7.39 31.18 0.23 0.35 16 19 C -0.15 0.13 10.46 23.65 0.25 0.38 16 20 C -0.06 0.03 6.20 24.76 0.15 0.19 16 21 C -0.02 0.08 2.98 71.24 0.21 0.29 16 22 O -0.54 2.31 12.86 -148.98 -1.92 0.39 16 23 Si 0.77 -2.20 32.08 68.60 2.20 0.00 16 24 O -0.17 -0.37 8.89 4.49 0.04 -0.33 16 25 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 26 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.09 0.44 6.49 -2.38 -0.02 0.42 16 28 H 0.42 -3.04 7.90 -92.71 -0.73 -3.77 16 29 H 0.12 -1.82 8.08 -2.39 -0.02 -1.84 16 30 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 31 H 0.11 -1.27 7.88 -2.38 -0.02 -1.29 16 32 H 0.15 -2.56 8.07 -2.39 -0.02 -2.58 16 33 H 0.24 -3.29 8.06 -2.91 -0.02 -3.31 16 34 H 0.21 -0.70 8.06 -2.91 -0.02 -0.72 16 35 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.09 -0.20 7.92 -2.39 -0.02 -0.22 16 37 H 0.18 -1.15 7.74 -2.91 -0.02 -1.17 16 38 H 0.14 -0.72 7.96 -2.39 -0.02 -0.74 16 39 H 0.40 -4.53 8.70 -74.06 -0.64 -5.18 16 40 H -0.28 -0.71 7.11 99.48 0.71 0.00 16 41 H -0.30 -1.30 7.11 99.48 0.71 -0.59 16 Total: 0.00 -30.20 355.30 1.39 -28.81 By element: Atomic # 1 Polarization: -21.81 SS G_CDS: -0.26 Total: -22.07 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 5.19 Total: 8.76 kcal Atomic # 7 Polarization: -4.04 SS G_CDS: -3.81 Total: -7.86 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -1.94 Total: -7.66 kcal Atomic # 14 Polarization: -2.20 SS G_CDS: 2.20 Total: 0.00 kcal Total: -30.20 1.39 -28.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_13308374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.469 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds