Wall clock time and date at job start Tue Mar 9 2021 13:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86293 * 109.47081 * 2 1 4 4 C 1.50694 * 109.46934 * 239.99939 * 2 1 3 5 5 C 1.34851 * 125.89125 * 120.03156 * 4 2 1 6 6 C 1.40892 * 107.41892 * 179.97438 * 5 4 2 7 7 C 1.34847 * 107.41388 * 0.02562 * 6 5 4 8 8 C 1.50709 * 125.88721 * 179.97438 * 7 6 5 9 9 C 1.50691 * 109.47324 * 85.02302 * 8 7 6 10 10 O 1.21289 * 120.00113 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00316 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00122 * 179.97438 * 11 9 8 13 13 H 1.08993 * 112.90929 * 336.25213 * 12 11 9 14 14 C 1.53962 * 113.66387 * 107.55425 * 12 11 9 15 15 C 1.53782 * 87.11063 * 139.88885 * 14 12 11 16 16 H 1.08997 * 113.61225 * 89.18406 * 15 14 12 17 17 C 1.52998 * 113.68747 * 220.07804 * 15 14 12 18 18 N 1.46499 * 109.46882 * 272.53320 * 17 15 14 19 19 C 1.35320 * 125.86393 * 124.72069 * 18 17 15 20 20 C 1.35350 * 106.17498 * 179.90657 * 19 18 17 21 21 N 1.33777 * 106.49340 * 0.34469 * 20 19 18 22 22 N 1.28629 * 108.88499 * 359.78123 * 21 20 19 23 23 C 1.53781 * 87.08260 * 334.63747 * 15 14 12 24 24 N 1.36341 * 108.22344 * 0.25737 * 7 6 5 25 25 H 0.96703 * 113.99632 * 59.99849 * 1 2 3 26 26 H 1.09001 * 109.46509 * 119.99805 * 2 1 3 27 27 H 1.48510 * 110.00351 * 59.99823 * 3 2 1 28 28 H 1.48509 * 110.00147 * 181.31565 * 3 2 1 29 29 H 1.08003 * 126.29013 * 359.97438 * 5 4 2 30 30 H 1.07998 * 126.29159 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47029 * 325.01769 * 8 7 6 32 32 H 1.09005 * 109.46740 * 205.02412 * 8 7 6 33 33 H 0.97002 * 120.00080 * 0.02562 * 11 9 8 34 34 H 1.08997 * 113.53543 * 25.33559 * 14 12 11 35 35 H 1.08998 * 113.73879 * 254.47157 * 14 12 11 36 36 H 1.08995 * 109.47742 * 32.53801 * 17 15 14 37 37 H 1.09003 * 109.47049 * 152.53819 * 17 15 14 38 38 H 1.07995 * 126.91433 * 0.02562 * 19 18 17 39 39 H 1.08001 * 126.75285 * 180.13080 * 20 19 18 40 40 H 1.09002 * 113.61445 * 139.98212 * 23 15 14 41 41 H 1.09002 * 113.61408 * 270.79943 * 23 15 14 42 42 H 0.96998 * 125.63942 * 179.73549 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7103 -0.1729 -2.1910 6 6 2.9456 -1.1750 -3.1531 7 6 2.3009 -2.2865 -2.7440 8 6 2.2749 -3.6090 -3.4662 9 6 3.4925 -4.4120 -3.0878 10 8 4.3021 -3.9553 -2.3087 11 7 3.6819 -5.6378 -3.6151 12 6 4.8660 -6.4183 -3.2476 13 1 5.6924 -5.7978 -2.9012 14 6 4.5583 -7.6090 -2.3214 15 6 5.5765 -8.4137 -3.1464 16 1 6.5976 -8.3397 -2.7722 17 6 5.1457 -9.8567 -3.4163 18 7 5.5798 -10.7113 -2.3084 19 6 4.7825 -11.5162 -1.5685 20 6 5.5897 -12.1187 -0.6645 21 7 6.8239 -11.6532 -0.8876 22 7 6.7842 -10.8214 -1.8679 23 6 5.2754 -7.4532 -4.3090 24 7 1.6715 -2.0057 -1.5676 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5138 0.8900 27 1 1.5615 2.4679 1.2085 28 1 3.5347 1.7703 -0.0320 29 1 3.0850 0.8397 -2.2179 30 1 3.5340 -1.0718 -4.0527 31 1 2.2740 -3.4353 -4.5423 32 1 1.3759 -4.1582 -3.1862 33 1 3.0346 -6.0030 -4.2385 34 1 3.5361 -7.9768 -2.4103 35 1 4.8625 -7.4502 -1.2868 36 1 4.0603 -9.9013 -3.5058 37 1 5.6013 -10.2045 -4.3435 38 1 3.7168 -11.6521 -1.6785 39 1 5.2949 -12.8321 0.0909 40 1 6.1592 -7.1674 -4.8793 41 1 4.4502 -7.7792 -4.9421 42 1 1.1307 -2.6258 -1.0539 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_14644196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:27:13 Heat of formation + Delta-G solvation = 100.950038 kcal Electronic energy + Delta-G solvation = -25350.031648 eV Core-core repulsion = 21528.523196 eV Total energy + Delta-G solvation = -3821.508452 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.18415 -42.34386 -41.12556 -39.53456 -37.70388 -35.79275 -34.35333 -32.97044 -31.96791 -31.93235 -29.89690 -29.01199 -26.79483 -25.57202 -24.43801 -23.59819 -22.51051 -21.75106 -21.37479 -21.13697 -20.54096 -18.96702 -18.64533 -18.11491 -17.65541 -17.13661 -16.62876 -16.49150 -16.28143 -16.22339 -15.81767 -15.29190 -15.12495 -15.03363 -14.67080 -14.60063 -14.34754 -14.06783 -13.86775 -13.66304 -13.56246 -13.49378 -13.09397 -12.73689 -12.66906 -12.38199 -12.10087 -12.02743 -12.01529 -11.84847 -11.59600 -11.05451 -10.88655 -10.65939 -10.34288 -10.07079 -9.80830 -8.96394 -4.98245 0.67673 1.09973 1.25138 1.50253 1.59540 1.61248 1.67688 1.86194 1.94468 2.30662 2.51344 3.31139 3.37737 3.49058 3.51120 3.66174 3.67565 3.72094 3.78042 3.97242 4.00814 4.12120 4.22172 4.30014 4.33256 4.37948 4.38829 4.48002 4.60313 4.64340 4.65291 4.73155 4.78735 4.80223 4.93715 5.00787 5.18911 5.24651 5.26536 5.28266 5.54702 5.70985 5.98936 6.12408 6.53813 6.66434 6.69764 7.27634 7.52666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.052 4.052 3 Si 0.810 3.190 4 C -0.022 4.022 5 C -0.203 4.203 6 C -0.201 4.201 7 C 0.033 3.967 8 C -0.065 4.065 9 C 0.508 3.492 10 O -0.584 6.584 11 N -0.703 5.703 12 C 0.117 3.883 13 H 0.080 0.920 14 C -0.143 4.143 15 C -0.122 4.122 16 H 0.079 0.921 17 C 0.120 3.880 18 N -0.284 5.284 19 C -0.033 4.033 20 C -0.075 4.075 21 N -0.324 5.324 22 N -0.129 5.129 23 C -0.111 4.111 24 N -0.537 5.537 25 H 0.397 0.603 26 H 0.099 0.901 27 H -0.292 1.292 28 H -0.296 1.296 29 H 0.150 0.850 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.131 0.869 33 H 0.423 0.577 34 H 0.115 0.885 35 H 0.039 0.961 36 H 0.150 0.850 37 H 0.116 0.884 38 H 0.237 0.763 39 H 0.209 0.791 40 H 0.082 0.918 41 H 0.131 0.869 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.620 -1.954 -9.242 14.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.162 4.162 3 Si 0.715 3.285 4 C -0.135 4.135 5 C -0.228 4.228 6 C -0.226 4.226 7 C -0.081 4.081 8 C -0.105 4.105 9 C 0.296 3.704 10 O -0.463 6.463 11 N -0.355 5.355 12 C 0.011 3.989 13 H 0.098 0.902 14 C -0.182 4.182 15 C -0.142 4.142 16 H 0.098 0.902 17 C 0.001 3.999 18 N -0.078 5.078 19 C -0.185 4.185 20 C -0.233 4.233 21 N -0.189 5.189 22 N -0.108 5.108 23 C -0.150 4.150 24 N -0.132 5.132 25 H 0.248 0.752 26 H 0.116 0.884 27 H -0.220 1.220 28 H -0.223 1.223 29 H 0.168 0.832 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.149 0.851 33 H 0.261 0.739 34 H 0.133 0.867 35 H 0.058 0.942 36 H 0.168 0.832 37 H 0.134 0.866 38 H 0.253 0.747 39 H 0.226 0.774 40 H 0.101 0.899 41 H 0.149 0.851 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -8.117 -0.969 -7.847 11.332 hybrid contribution -0.828 -1.353 0.805 1.779 sum -8.945 -2.323 -7.042 11.619 Atomic orbital electron populations 1.86440 1.17089 1.82223 1.50737 1.24908 0.85206 1.11225 0.94859 0.93086 0.77259 0.74036 0.84091 1.20958 1.06360 0.86112 1.00108 1.20916 1.04784 1.00783 0.96344 1.20857 1.05768 0.93414 1.02532 1.19972 1.01698 0.96864 0.89614 1.20269 0.96941 0.89996 1.03335 1.21167 0.87634 0.81857 0.79775 1.90772 1.47640 1.71152 1.36777 1.45781 1.25457 1.16417 1.47881 1.22323 0.88668 0.90572 0.97323 0.90228 1.23626 1.00619 0.96035 0.97879 1.22570 0.99928 0.92338 0.99363 0.90213 1.22600 1.03946 0.87256 0.86115 1.47855 1.05680 1.29456 1.24816 1.24417 1.01649 0.96926 0.95465 1.24244 0.89070 1.05715 1.04253 1.75086 1.24069 1.09070 1.10639 1.78219 1.04210 1.18062 1.10329 1.23297 1.03846 0.92423 0.95403 1.41874 1.40936 1.11076 1.19350 0.75215 0.88379 1.22005 1.22318 0.83236 0.84102 0.83481 0.85075 0.73871 0.86671 0.94200 0.83191 0.86558 0.74666 0.77421 0.89944 0.85128 0.74408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.25 12.88 -148.98 -1.92 -2.17 16 2 C -0.05 -0.09 3.08 71.23 0.22 0.13 16 3 Si 0.81 0.00 30.58 68.60 2.10 2.10 16 4 C -0.02 -0.08 6.50 41.08 0.27 0.19 16 5 C -0.20 -0.93 9.37 22.14 0.21 -0.73 16 6 C -0.20 -0.93 10.77 22.14 0.24 -0.69 16 7 C 0.03 0.05 5.66 41.08 0.23 0.29 16 8 C -0.07 0.44 6.24 29.10 0.18 0.62 16 9 C 0.51 -0.10 7.82 87.65 0.69 0.58 16 10 O -0.58 -7.28 15.64 -3.06 -0.05 -7.33 16 11 N -0.70 5.35 5.36 -439.75 -2.36 2.99 16 12 C 0.12 -0.50 4.25 45.58 0.19 -0.30 16 13 H 0.08 0.33 7.47 -2.39 -0.02 0.31 16 14 C -0.14 0.75 7.44 31.18 0.23 0.98 16 15 C -0.12 0.79 3.83 -10.27 -0.04 0.75 16 16 H 0.08 0.06 7.91 -2.39 -0.02 0.04 16 17 C 0.12 -1.19 6.29 86.38 0.54 -0.64 16 18 N -0.28 0.12 3.44 -347.74 -1.20 -1.07 16 19 C -0.03 0.12 11.57 83.49 0.97 1.09 16 20 C -0.07 -0.21 12.05 83.73 1.01 0.79 16 21 N -0.32 -3.93 12.41 -58.25 -0.72 -4.66 16 22 N -0.13 -1.26 12.76 37.02 0.47 -0.79 16 23 C -0.11 1.21 7.39 31.12 0.23 1.44 16 24 N -0.54 -1.14 6.08 -171.12 -1.04 -2.18 16 25 H 0.40 -3.00 8.70 -74.06 -0.64 -3.64 16 26 H 0.10 0.37 7.96 -2.39 -0.02 0.35 16 27 H -0.29 -1.76 7.11 99.48 0.71 -1.05 16 28 H -0.30 -1.99 7.11 99.48 0.71 -1.29 16 29 H 0.15 0.20 6.22 -2.91 -0.02 0.18 16 30 H 0.14 0.34 8.06 -2.91 -0.02 0.32 16 31 H 0.15 -1.83 8.14 -2.39 -0.02 -1.85 16 32 H 0.13 -1.70 8.14 -2.38 -0.02 -1.71 16 33 H 0.42 -6.83 8.73 -92.71 -0.81 -7.64 16 34 H 0.12 -1.25 7.90 -2.39 -0.02 -1.27 16 35 H 0.04 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.15 -2.75 7.78 -2.39 -0.02 -2.77 16 37 H 0.12 -1.37 8.14 -2.39 -0.02 -1.39 16 38 H 0.24 -3.41 8.06 -2.91 -0.02 -3.44 16 39 H 0.21 -0.67 8.06 -2.91 -0.02 -0.70 16 40 H 0.08 -0.76 8.14 -2.39 -0.02 -0.78 16 41 H 0.13 -2.35 8.08 -2.39 -0.02 -2.37 16 42 H 0.42 -0.54 8.96 -92.71 -0.83 -1.38 16 Total: 0.00 -37.91 360.20 -0.71 -38.62 By element: Atomic # 1 Polarization: -28.85 SS G_CDS: -1.17 Total: -30.01 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.17 Total: 4.50 kcal Atomic # 7 Polarization: -0.87 SS G_CDS: -4.84 Total: -5.71 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -1.97 Total: -9.50 kcal Atomic # 14 Polarization: 0.00 SS G_CDS: 2.10 Total: 2.10 kcal Total: -37.91 -0.71 -38.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_14644196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.573 kcal (2) G-P(sol) polarization free energy of solvation -37.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds