Wall clock time and date at job start Tue Mar 9 2021 13:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.46922 * 2 1 4 4 C 1.50701 * 109.46980 * 239.99999 * 2 1 3 5 5 C 1.38243 * 119.96851 * 120.25500 * 4 2 1 6 6 C 1.38288 * 120.10724 * 180.25848 * 5 4 2 7 7 C 1.38126 * 120.05386 * 359.48327 * 6 5 4 8 8 C 1.38746 * 119.94576 * 0.26200 * 7 6 5 9 9 O 1.35908 * 120.05602 * 179.97438 * 8 7 6 10 10 C 1.42892 * 116.99907 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.47378 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47463 * 180.02562 * 11 10 9 13 13 O 1.21276 * 120.00270 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00027 * 180.02562 * 12 11 10 15 15 C 1.46505 * 120.00022 * 180.02562 * 14 12 11 16 16 H 1.08998 * 112.84680 * 23.79678 * 15 14 12 17 17 C 1.53776 * 113.61313 * 154.99973 * 15 14 12 18 18 C 1.53780 * 87.07909 * 139.98082 * 17 15 14 19 19 H 1.08996 * 113.62004 * 89.11993 * 18 17 15 20 20 C 1.53010 * 113.61324 * 219.93516 * 18 17 15 21 21 N 1.46499 * 109.47159 * 185.00105 * 20 18 17 22 22 C 1.35311 * 125.87134 * 124.99865 * 21 20 18 23 23 C 1.35353 * 106.17725 * 179.97438 * 22 21 20 24 24 N 1.33769 * 106.49493 * 0.02562 * 23 22 21 25 25 N 1.28636 * 108.88606 * 359.72801 * 24 23 22 26 26 C 1.53778 * 113.61036 * 252.49722 * 15 14 12 27 27 C 1.38166 * 119.97212 * 299.99951 * 4 2 1 28 28 H 0.96705 * 114.00185 * 299.99973 * 1 2 3 29 29 H 1.08997 * 109.47022 * 119.99963 * 2 1 3 30 30 H 1.48503 * 109.99885 * 178.68112 * 3 2 1 31 31 H 1.48496 * 110.00198 * 300.00080 * 3 2 1 32 32 H 1.07993 * 119.94940 * 359.97438 * 5 4 2 33 33 H 1.08002 * 119.97454 * 179.76977 * 6 5 4 34 34 H 1.07999 * 120.02656 * 180.27809 * 7 6 5 35 35 H 1.08998 * 109.47662 * 300.00790 * 10 9 8 36 36 H 1.09009 * 109.47105 * 60.00844 * 10 9 8 37 37 H 1.09006 * 109.47089 * 300.00606 * 11 10 9 38 38 H 1.09000 * 109.47040 * 60.00307 * 11 10 9 39 39 H 0.96999 * 119.99985 * 0.02562 * 14 12 11 40 40 H 1.09000 * 113.61335 * 254.52496 * 17 15 14 41 41 H 1.08996 * 113.61814 * 25.34765 * 17 15 14 42 42 H 1.08999 * 109.46711 * 304.99815 * 20 18 17 43 43 H 1.08992 * 109.47134 * 64.99638 * 20 18 17 44 44 H 1.08004 * 126.91002 * 0.02562 * 22 21 20 45 45 H 1.08000 * 126.75191 * 180.02562 * 23 22 21 46 46 H 1.09001 * 113.61726 * 334.56664 * 26 15 14 47 47 H 1.08998 * 113.61851 * 105.46780 * 26 15 14 48 48 H 1.08006 * 120.02853 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7304 -0.0395 -2.1374 6 6 3.1885 -0.6870 -3.2702 7 6 2.8573 -2.0094 -3.4927 8 6 2.0598 -2.6865 -2.5813 9 8 1.7321 -3.9875 -2.7983 10 6 2.2431 -4.5957 -3.9860 11 6 1.7719 -6.0495 -4.0579 12 6 2.3113 -6.6912 -5.3102 13 8 3.0048 -6.0492 -6.0702 14 7 2.0230 -7.9787 -5.5856 15 6 2.5479 -8.6027 -6.8028 16 1 3.4473 -8.1126 -7.1756 17 6 2.6748 -10.1321 -6.7054 18 6 2.1661 -10.1879 -8.1555 19 1 2.9607 -10.1316 -8.8995 20 6 1.1869 -11.3340 -8.4178 21 7 0.8545 -11.3755 -9.8440 22 6 0.9882 -12.4479 -10.6584 23 6 0.5682 -12.0475 -11.8812 24 7 0.2034 -10.7665 -11.7568 25 7 0.3801 -10.3998 -10.5366 26 6 1.4798 -8.8389 -7.8836 27 6 1.5972 -2.0332 -1.4485 28 1 -0.3934 0.4417 0.7651 29 1 1.7923 -0.5138 0.8900 30 1 3.5346 1.7703 0.0321 31 1 1.5614 2.4679 -1.2084 32 1 2.9935 0.9933 -1.9633 33 1 3.8096 -0.1597 -3.9791 34 1 3.2190 -2.5160 -4.3752 35 1 1.8790 -4.0526 -4.8581 36 1 3.3327 -4.5671 -3.9690 37 1 2.1357 -6.5930 -3.1858 38 1 0.6824 -6.0779 -4.0751 39 1 1.4680 -8.4921 -4.9780 40 1 3.7018 -10.4784 -6.5893 41 1 1.9924 -10.5819 -5.9842 42 1 1.6455 -12.2781 -8.1240 43 1 0.2781 -11.1753 -7.8374 44 1 1.3554 -13.4266 -10.3870 45 1 0.5342 -12.6447 -12.7804 46 1 0.4696 -8.9352 -7.4856 47 1 1.5419 -8.1412 -8.7188 48 1 0.9759 -2.5580 -0.7378 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_4549614.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:27:39 Heat of formation + Delta-G solvation = 48.938785 kcal Electronic energy + Delta-G solvation = -29851.475808 eV Core-core repulsion = 25490.691938 eV Total energy + Delta-G solvation = -4360.783870 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.16500 -41.57087 -41.18712 -39.78164 -39.06716 -37.34586 -35.81993 -34.41100 -33.25709 -32.71150 -31.93915 -31.02322 -29.50781 -27.13970 -26.76608 -25.90468 -24.24487 -23.84496 -23.51616 -22.42109 -21.91940 -21.56912 -20.70168 -19.23351 -18.67168 -18.41057 -18.03868 -17.61028 -17.53235 -17.40193 -17.15952 -16.82211 -16.27061 -16.12464 -15.91815 -15.78088 -15.41964 -15.29247 -14.94014 -14.66984 -14.53159 -14.48914 -14.21553 -14.03545 -13.74883 -13.48579 -13.46433 -13.22900 -12.98854 -12.89368 -12.63152 -12.43442 -12.31273 -12.17669 -12.01267 -11.93980 -11.92262 -11.82893 -11.44266 -11.10034 -10.98411 -10.44351 -10.32345 -10.12545 -9.99060 -9.43985 -4.94775 0.03691 0.19856 0.69222 1.27177 1.44998 1.51491 1.62962 1.64363 1.65301 1.97816 2.42841 2.48096 3.28305 3.35281 3.41229 3.48111 3.56637 3.63282 3.68001 3.73076 3.76334 3.79824 3.83333 3.93557 4.01644 4.11681 4.13493 4.15423 4.24390 4.30438 4.33704 4.35194 4.37410 4.52980 4.61958 4.66078 4.68064 4.68983 4.76936 4.82328 4.83535 4.94155 5.02700 5.07006 5.14952 5.18370 5.26014 5.27641 5.50228 5.51261 5.72740 6.19135 6.43391 6.90083 7.12983 7.54888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.082 4.082 3 Si 0.783 3.217 4 C -0.051 4.051 5 C -0.181 4.181 6 C -0.077 4.077 7 C -0.212 4.212 8 C 0.124 3.876 9 O -0.317 6.317 10 C 0.071 3.929 11 C -0.131 4.131 12 C 0.518 3.482 13 O -0.588 6.588 14 N -0.702 5.702 15 C 0.113 3.887 16 H 0.089 0.911 17 C -0.108 4.108 18 C -0.116 4.116 19 H 0.085 0.915 20 C 0.118 3.882 21 N -0.286 5.286 22 C -0.035 4.035 23 C -0.074 4.074 24 N -0.326 5.326 25 N -0.122 5.122 26 C -0.142 4.142 27 C -0.135 4.135 28 H 0.405 0.595 29 H 0.099 0.901 30 H -0.287 1.287 31 H -0.299 1.299 32 H 0.121 0.879 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.422 0.578 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.151 0.849 43 H 0.115 0.885 44 H 0.237 0.763 45 H 0.209 0.791 46 H 0.098 0.902 47 H 0.043 0.957 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.329 -8.298 9.097 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.191 4.191 3 Si 0.689 3.311 4 C -0.051 4.051 5 C -0.199 4.199 6 C -0.095 4.095 7 C -0.231 4.231 8 C 0.078 3.922 9 O -0.231 6.231 10 C -0.004 4.004 11 C -0.171 4.171 12 C 0.306 3.694 13 O -0.469 6.469 14 N -0.353 5.353 15 C 0.008 3.992 16 H 0.107 0.893 17 C -0.147 4.147 18 C -0.136 4.136 19 H 0.104 0.896 20 C -0.001 4.001 21 N -0.081 5.081 22 C -0.186 4.186 23 C -0.232 4.232 24 N -0.191 5.191 25 N -0.101 5.101 26 C -0.181 4.181 27 C -0.153 4.153 28 H 0.256 0.744 29 H 0.117 0.883 30 H -0.214 1.214 31 H -0.227 1.227 32 H 0.139 0.861 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.260 0.740 40 H 0.111 0.889 41 H 0.143 0.857 42 H 0.168 0.832 43 H 0.133 0.867 44 H 0.253 0.747 45 H 0.226 0.774 46 H 0.117 0.883 47 H 0.062 0.938 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.799 -6.230 7.784 10.002 hybrid contribution 0.424 -1.403 -0.838 1.688 sum 1.222 -7.633 6.946 10.392 Atomic orbital electron populations 1.86447 1.16977 1.82469 1.51462 1.24898 0.86101 1.11246 0.96862 0.94435 0.77171 0.74907 0.84582 1.19540 0.96276 0.93416 0.95911 1.20978 1.02704 0.99699 0.96491 1.21153 0.97798 0.93934 0.96573 1.21522 1.03434 0.96598 1.01503 1.19131 0.94651 0.83701 0.94674 1.85956 1.71260 1.22295 1.43625 1.22483 0.99038 0.93563 0.85345 1.21442 1.04948 0.93587 0.97108 1.20693 0.79318 0.82503 0.86889 1.90743 1.40443 1.63803 1.51867 1.45789 1.52992 1.11435 1.25111 1.22473 0.97245 0.94422 0.85036 0.89283 1.23282 1.04146 0.92644 0.94610 1.22525 0.98006 0.94065 0.98960 0.89650 1.22600 1.01212 1.03060 0.73211 1.47883 1.39849 1.08022 1.12301 1.24441 1.06971 0.96666 0.90539 1.24230 1.05210 0.92855 1.00885 1.75095 1.19812 1.14396 1.09822 1.78272 1.17403 1.15330 0.99111 1.23518 0.99563 0.96813 0.98232 1.20371 1.03196 0.94239 0.97505 0.74356 0.88325 1.21437 1.22729 0.86137 0.83426 0.84135 0.92098 0.91558 0.85002 0.85520 0.73972 0.88942 0.85694 0.83156 0.86682 0.74686 0.77448 0.88329 0.93832 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.59 12.74 -148.98 -1.90 -2.49 16 2 C -0.08 -0.08 2.81 71.24 0.20 0.12 16 3 Si 0.78 -0.72 29.79 68.60 2.04 1.32 16 4 C -0.05 -0.38 5.42 -19.88 -0.11 -0.49 16 5 C -0.18 -1.46 8.67 22.28 0.19 -1.26 16 6 C -0.08 -0.53 10.04 22.26 0.22 -0.30 16 7 C -0.21 -1.59 9.04 22.36 0.20 -1.38 16 8 C 0.12 1.05 6.69 22.50 0.15 1.20 16 9 O -0.32 -1.95 10.14 -92.51 -0.94 -2.88 16 10 C 0.07 0.21 4.03 71.98 0.29 0.50 16 11 C -0.13 0.48 6.07 29.85 0.18 0.66 16 12 C 0.52 0.55 7.83 87.66 0.69 1.24 16 13 O -0.59 -6.67 15.58 -3.02 -0.05 -6.71 16 14 N -0.70 3.90 5.35 -440.05 -2.36 1.54 16 15 C 0.11 -0.42 4.24 45.51 0.19 -0.22 16 16 H 0.09 0.24 7.46 -2.39 -0.02 0.22 16 17 C -0.11 1.27 7.39 31.12 0.23 1.50 16 18 C -0.12 0.83 3.76 -10.26 -0.04 0.79 16 19 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 20 C 0.12 -1.19 6.30 86.38 0.54 -0.65 16 21 N -0.29 0.20 3.44 -347.72 -1.20 -0.99 16 22 C -0.03 0.13 11.57 83.49 0.97 1.10 16 23 C -0.07 -0.20 12.05 83.73 1.01 0.81 16 24 N -0.33 -3.87 12.41 -58.26 -0.72 -4.60 16 25 N -0.12 -1.13 12.94 37.02 0.48 -0.65 16 26 C -0.14 0.30 7.43 31.12 0.23 0.53 16 27 C -0.13 -1.10 9.55 22.36 0.21 -0.89 16 28 H 0.40 -4.08 8.74 -74.05 -0.65 -4.73 16 29 H 0.10 -0.34 7.96 -2.39 -0.02 -0.36 16 30 H -0.29 -1.21 7.11 99.48 0.71 -0.51 16 31 H -0.30 -2.12 7.11 99.48 0.71 -1.41 16 32 H 0.12 0.80 4.87 -2.91 -0.01 0.79 16 33 H 0.15 0.32 8.06 -2.91 -0.02 0.30 16 34 H 0.14 0.74 6.30 -2.91 -0.02 0.72 16 35 H 0.06 0.32 7.62 -2.39 -0.02 0.30 16 36 H 0.07 0.27 7.62 -2.38 -0.02 0.25 16 37 H 0.13 -1.09 8.14 -2.38 -0.02 -1.11 16 38 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 39 H 0.42 -5.51 8.73 -92.71 -0.81 -6.32 16 40 H 0.09 -1.12 8.14 -2.39 -0.02 -1.14 16 41 H 0.12 -2.17 8.08 -2.39 -0.02 -2.19 16 42 H 0.15 -2.70 8.07 -2.39 -0.02 -2.71 16 43 H 0.12 -1.40 7.85 -2.39 -0.02 -1.42 16 44 H 0.24 -3.38 8.06 -2.91 -0.02 -3.41 16 45 H 0.21 -0.71 8.06 -2.91 -0.02 -0.73 16 46 H 0.10 -0.41 7.90 -2.39 -0.02 -0.43 16 47 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 48 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 Total: 0.00 -36.55 403.64 0.32 -36.23 By element: Atomic # 1 Polarization: -23.61 SS G_CDS: -0.42 Total: -24.02 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.37 Total: 3.25 kcal Atomic # 7 Polarization: -0.90 SS G_CDS: -3.80 Total: -4.69 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -2.88 Total: -12.09 kcal Atomic # 14 Polarization: -0.72 SS G_CDS: 2.04 Total: 1.32 kcal Total: -36.55 0.32 -36.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_4549614.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.170 kcal (2) G-P(sol) polarization free energy of solvation -36.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds