Wall clock time and date at job start Tue Mar 9 2021 12:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.46852 * 2 1 4 4 C 1.50696 * 109.47270 * 119.99935 * 2 1 3 5 5 C 1.35452 * 125.56682 * 244.97613 * 4 2 1 6 6 C 1.39830 * 107.87000 * 179.76305 * 5 4 2 7 7 C 1.37874 * 107.08015 * 0.41447 * 6 5 4 8 8 C 1.46678 * 126.22908 * 179.84739 * 7 6 5 9 9 O 1.21697 * 120.00627 * 359.69435 * 8 7 6 10 10 N 1.34782 * 119.99859 * 179.69506 * 8 7 6 11 11 C 1.46504 * 120.00014 * 180.02562 * 10 8 7 12 12 H 1.09004 * 112.90371 * 23.74582 * 11 10 8 13 13 C 1.53778 * 113.61214 * 154.99486 * 11 10 8 14 14 C 1.53787 * 87.08035 * 139.97990 * 13 11 10 15 15 H 1.09004 * 113.61202 * 89.11582 * 14 13 11 16 16 C 1.52992 * 113.61596 * 220.01776 * 14 13 11 17 17 N 1.46503 * 109.47166 * 184.99788 * 16 14 13 18 18 C 1.35308 * 125.86697 * 124.71605 * 17 16 14 19 19 C 1.35355 * 106.17511 * 179.90506 * 18 17 16 20 20 N 1.33767 * 106.49592 * 0.35204 * 19 18 17 21 21 N 1.28638 * 108.88700 * 359.77417 * 20 19 18 22 22 C 1.53778 * 113.61207 * 252.49389 * 11 10 8 23 23 N 1.35528 * 125.56513 * 64.99869 * 4 2 1 24 24 H 0.96708 * 114.00261 * 299.99716 * 1 2 3 25 25 H 1.08998 * 109.46692 * 240.00008 * 2 1 3 26 26 H 1.48501 * 109.99810 * 178.68517 * 3 2 1 27 27 H 1.48502 * 109.99802 * 299.99899 * 3 2 1 28 28 H 1.08008 * 126.06261 * 0.02562 * 5 4 2 29 29 H 1.08002 * 126.46181 * 180.26967 * 6 5 4 30 30 H 0.97001 * 120.00210 * 359.97438 * 10 8 7 31 31 H 1.08998 * 113.61879 * 25.43473 * 13 11 10 32 32 H 1.08997 * 113.69304 * 254.53559 * 13 11 10 33 33 H 1.08996 * 109.47544 * 305.00011 * 16 14 13 34 34 H 1.09007 * 109.47088 * 65.00447 * 16 14 13 35 35 H 1.08000 * 126.91400 * 0.02562 * 18 17 16 36 36 H 1.07999 * 126.74821 * 180.12523 * 19 18 17 37 37 H 1.08993 * 113.61229 * 105.47290 * 22 11 10 38 38 H 1.09000 * 113.61263 * 334.56940 * 22 11 10 39 39 H 0.97004 * 125.68011 * 359.95797 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6334 -0.1394 2.2383 6 6 2.9033 -1.1297 3.1879 7 6 2.3539 -2.3032 2.7166 8 6 2.3949 -3.6088 3.3837 9 8 2.9589 -3.7272 4.4556 10 7 1.8079 -4.6777 2.8095 11 6 1.8484 -5.9817 3.4760 12 1 1.9915 -5.9030 4.5538 13 6 0.6940 -6.9148 3.0744 14 6 1.7224 -8.0582 3.0748 15 1 1.8311 -8.5473 4.0429 16 6 1.5374 -9.0495 1.9242 17 7 2.4819 -10.1587 2.0786 18 6 2.1609 -11.4722 2.1275 19 6 3.3288 -12.1405 2.2740 20 7 4.2936 -11.2149 2.3149 21 7 3.7591 -10.0508 2.1965 22 6 2.7937 -6.9894 2.8010 23 7 1.7549 -2.0249 1.5090 24 1 -0.3934 0.4417 0.7651 25 1 1.7923 -0.5138 -0.8900 26 1 3.5345 1.7704 0.0320 27 1 1.5614 2.4679 -1.2085 28 1 2.9284 0.8978 2.2998 29 1 3.4426 -1.0004 4.1147 30 1 1.3580 -4.5834 1.9553 31 1 0.2811 -6.6994 2.0889 32 1 -0.0734 -7.0176 3.8416 33 1 0.5182 -9.4356 1.9376 34 1 1.7222 -8.5442 0.9761 35 1 1.1721 -11.9013 2.0610 36 1 3.4563 -13.2105 2.3475 37 1 3.7221 -7.1515 3.3484 38 1 2.9548 -6.7943 1.7407 39 1 1.2844 -2.6634 0.9505 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_6580494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:09 Heat of formation + Delta-G solvation = 104.470122 kcal Electronic energy + Delta-G solvation = -23732.001032 eV Core-core repulsion = 20066.182841 eV Total energy + Delta-G solvation = -3665.818191 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.17568 -42.55203 -41.03823 -39.45045 -37.66021 -35.86958 -34.46302 -32.17516 -31.94815 -31.40292 -29.56272 -27.03547 -26.79461 -24.88027 -23.59248 -23.17650 -22.16589 -21.48509 -21.43479 -20.81058 -19.70375 -18.67190 -18.07903 -17.56892 -17.03514 -16.68994 -16.30244 -16.25658 -16.01790 -15.75778 -15.30274 -15.24076 -15.14333 -14.62870 -14.42934 -14.24690 -13.96877 -13.86830 -13.66439 -13.52271 -13.19637 -12.64514 -12.38349 -12.22035 -12.07287 -12.04503 -11.95282 -11.49209 -11.31174 -11.02797 -10.65965 -10.33252 -10.26865 -10.08584 -9.29476 -4.91244 0.26854 0.68117 1.22923 1.49759 1.52712 1.62231 1.72478 1.90241 2.00185 2.20945 2.23420 3.24957 3.37405 3.47673 3.53317 3.59526 3.61218 3.70590 3.78535 3.98731 4.12171 4.21843 4.24392 4.30168 4.32354 4.34325 4.44434 4.62723 4.63575 4.72835 4.81873 4.90017 4.94726 4.99931 5.07011 5.11029 5.26740 5.41769 5.58004 5.71406 5.77519 6.26410 6.44151 6.68639 7.01008 7.53979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.052 4.052 3 Si 0.802 3.198 4 C 0.030 3.970 5 C -0.205 4.205 6 C -0.120 4.120 7 C -0.065 4.065 8 C 0.587 3.413 9 O -0.574 6.574 10 N -0.704 5.704 11 C 0.115 3.885 12 H 0.094 0.906 13 C -0.109 4.109 14 C -0.113 4.113 15 H 0.089 0.911 16 C 0.119 3.881 17 N -0.287 5.287 18 C -0.034 4.034 19 C -0.074 4.074 20 N -0.325 5.325 21 N -0.122 5.122 22 C -0.143 4.143 23 N -0.511 5.511 24 H 0.399 0.601 25 H 0.117 0.883 26 H -0.289 1.289 27 H -0.295 1.295 28 H 0.170 0.830 29 H 0.144 0.856 30 H 0.412 0.588 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.151 0.849 34 H 0.113 0.887 35 H 0.237 0.763 36 H 0.209 0.791 37 H 0.046 0.954 38 H 0.095 0.905 39 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.862 0.624 -3.641 11.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.162 4.162 3 Si 0.706 3.294 4 C -0.089 4.089 5 C -0.229 4.229 6 C -0.146 4.146 7 C -0.179 4.179 8 C 0.376 3.624 9 O -0.453 6.453 10 N -0.355 5.355 11 C 0.010 3.990 12 H 0.112 0.888 13 C -0.147 4.147 14 C -0.133 4.133 15 H 0.107 0.893 16 C 0.000 4.000 17 N -0.081 5.081 18 C -0.185 4.185 19 C -0.232 4.232 20 N -0.190 5.190 21 N -0.101 5.101 22 C -0.182 4.182 23 N -0.108 5.108 24 H 0.250 0.750 25 H 0.134 0.866 26 H -0.216 1.216 27 H -0.222 1.222 28 H 0.187 0.813 29 H 0.162 0.838 30 H 0.248 0.752 31 H 0.140 0.860 32 H 0.114 0.886 33 H 0.169 0.831 34 H 0.131 0.869 35 H 0.253 0.747 36 H 0.226 0.774 37 H 0.065 0.935 38 H 0.114 0.886 39 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -8.809 1.652 -3.867 9.761 hybrid contribution -0.600 -1.717 -0.535 1.896 sum -9.409 -0.065 -4.402 10.388 Atomic orbital electron populations 1.86476 1.16682 1.82143 1.50808 1.24994 0.85477 1.11020 0.94710 0.92992 0.77744 0.73982 0.84637 1.21354 1.03879 0.84230 0.99480 1.20956 1.06137 1.00884 0.94903 1.21504 1.01377 0.91153 1.00613 1.20290 1.10935 0.95333 0.91308 1.17323 0.77905 0.83123 0.84037 1.90851 1.45959 1.85264 1.23242 1.45706 1.56681 1.08294 1.24776 1.22547 0.98423 0.80220 0.97833 0.88784 1.23293 0.95458 0.90985 1.04984 1.22516 0.98094 0.94116 0.98595 0.89288 1.22585 0.92287 0.84681 1.00484 1.47878 1.06651 1.08688 1.44895 1.24440 1.03843 0.82985 1.07276 1.24240 0.89091 1.02357 1.07503 1.75097 1.29539 0.96219 1.18191 1.78281 0.91751 1.19132 1.20983 1.23522 0.97593 0.95229 1.01812 1.41864 1.42494 1.09619 1.16844 0.74994 0.86584 1.21572 1.22245 0.81303 0.83846 0.75154 0.85956 0.88593 0.83078 0.86856 0.74677 0.77404 0.93538 0.88642 0.73199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.10 12.88 -148.98 -1.92 1.18 16 2 C -0.05 0.29 3.08 71.23 0.22 0.51 16 3 Si 0.80 -4.44 30.56 68.60 2.10 -2.34 16 4 C 0.03 -0.09 6.46 41.34 0.27 0.18 16 5 C -0.20 0.20 9.32 22.01 0.21 0.40 16 6 C -0.12 -0.49 10.65 22.57 0.24 -0.25 16 7 C -0.06 -0.19 7.06 40.35 0.28 0.10 16 8 C 0.59 3.43 7.79 86.45 0.67 4.10 16 9 O -0.57 -8.85 16.48 -4.34 -0.07 -8.92 16 10 N -0.70 1.86 5.35 -443.98 -2.38 -0.52 16 11 C 0.11 -0.27 4.24 45.51 0.19 -0.08 16 12 H 0.09 0.34 7.46 -2.38 -0.02 0.32 16 13 C -0.11 1.20 7.39 31.12 0.23 1.43 16 14 C -0.11 0.78 3.76 -10.27 -0.04 0.74 16 15 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 16 C 0.12 -1.17 6.29 86.38 0.54 -0.62 16 17 N -0.29 0.15 3.44 -347.74 -1.20 -1.04 16 18 C -0.03 0.13 11.57 83.49 0.97 1.09 16 19 C -0.07 -0.20 12.05 83.73 1.01 0.81 16 20 N -0.33 -3.90 12.41 -58.26 -0.72 -4.62 16 21 N -0.12 -1.15 12.93 37.02 0.48 -0.68 16 22 C -0.14 0.18 7.43 31.12 0.23 0.41 16 23 N -0.51 1.77 5.99 -171.94 -1.03 0.74 16 24 H 0.40 -5.07 8.70 -74.05 -0.64 -5.71 16 25 H 0.12 -0.65 7.96 -2.39 -0.02 -0.67 16 26 H -0.29 -0.19 7.11 99.48 0.71 0.51 16 27 H -0.29 -0.46 7.11 99.48 0.71 0.25 16 28 H 0.17 -0.94 6.19 -2.91 -0.02 -0.96 16 29 H 0.14 0.74 8.06 -2.91 -0.02 0.71 16 30 H 0.41 -4.08 7.86 -92.71 -0.73 -4.80 16 31 H 0.12 -2.03 8.08 -2.39 -0.02 -2.05 16 32 H 0.10 -1.14 8.14 -2.39 -0.02 -1.16 16 33 H 0.15 -2.69 8.07 -2.39 -0.02 -2.71 16 34 H 0.11 -1.33 7.84 -2.38 -0.02 -1.35 16 35 H 0.24 -3.37 8.06 -2.91 -0.02 -3.40 16 36 H 0.21 -0.71 8.06 -2.91 -0.02 -0.73 16 37 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.10 -0.28 7.90 -2.39 -0.02 -0.30 16 39 H 0.43 -3.95 8.19 -92.71 -0.76 -4.71 16 Total: 0.00 -33.46 338.20 -0.69 -34.16 By element: Atomic # 1 Polarization: -25.80 SS G_CDS: -0.98 Total: -26.78 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 5.02 Total: 8.82 kcal Atomic # 7 Polarization: -1.27 SS G_CDS: -4.85 Total: -6.12 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -1.99 Total: -7.74 kcal Atomic # 14 Polarization: -4.44 SS G_CDS: 2.10 Total: -2.34 kcal Total: -33.46 -0.69 -34.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_6580494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.628 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds