Wall clock time and date at job start Tue Mar 9 2021 12:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86302 * 109.46555 * 2 1 4 4 C 1.50698 * 109.47300 * 120.00271 * 2 1 3 5 5 C 1.32770 * 124.71222 * 64.72393 * 4 2 1 6 6 C 1.44427 * 113.08208 * 180.26642 * 5 4 2 7 7 C 1.47189 * 123.46003 * 180.02562 * 6 5 4 8 8 O 1.21634 * 120.00148 * 359.95416 * 7 6 5 9 9 N 1.34774 * 119.99828 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99828 * 180.02562 * 9 7 6 11 11 H 1.08997 * 112.84841 * 334.67054 * 10 9 7 12 12 C 1.53784 * 113.61269 * 105.86572 * 10 9 7 13 13 C 1.53954 * 87.01894 * 139.95183 * 12 10 9 14 14 H 1.09005 * 113.61410 * 89.19907 * 13 12 10 15 15 C 1.52992 * 113.66840 * 220.06721 * 13 12 10 16 16 N 1.46500 * 109.47151 * 272.56187 * 15 13 12 17 17 C 1.35311 * 125.87167 * 125.00011 * 16 15 13 18 18 C 1.35352 * 106.17861 * 179.97438 * 17 16 15 19 19 N 1.33778 * 106.49330 * 0.02562 * 18 17 16 20 20 N 1.28636 * 108.88397 * 359.73012 * 19 18 17 21 21 C 1.53784 * 87.11440 * 334.63840 * 13 12 10 22 22 C 1.36011 * 113.07669 * 0.02562 * 6 5 4 23 23 S 1.70440 * 110.82053 * 0.02562 * 22 6 5 24 24 H 0.96702 * 114.00321 * 60.00263 * 1 2 3 25 25 H 1.08996 * 109.46965 * 240.00527 * 2 1 3 26 26 H 1.48499 * 109.99985 * 60.00318 * 3 2 1 27 27 H 1.48508 * 109.99499 * 181.31679 * 3 2 1 28 28 H 1.08002 * 123.46009 * 0.23965 * 5 4 2 29 29 H 0.96995 * 120.00543 * 0.02562 * 9 7 6 30 30 H 1.09000 * 113.61263 * 254.52738 * 12 10 9 31 31 H 1.08996 * 113.61339 * 25.43187 * 12 10 9 32 32 H 1.09000 * 109.47272 * 32.56086 * 15 13 12 33 33 H 1.09004 * 109.47705 * 152.56086 * 15 13 12 34 34 H 1.08001 * 126.90790 * 0.02562 * 17 16 15 35 35 H 1.08000 * 126.75392 * 180.02562 * 18 17 16 36 36 H 1.09003 * 113.61393 * 270.81491 * 21 13 12 37 37 H 1.08997 * 113.61886 * 139.90707 * 21 13 12 38 38 H 1.08000 * 124.58757 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7441 -1.9992 1.4887 6 6 2.3276 -2.4161 2.7424 7 6 2.2562 -3.7951 3.2521 8 8 1.6821 -4.6525 2.6081 9 7 2.8266 -4.1076 4.4325 10 6 2.7561 -5.4803 4.9395 11 1 1.8994 -6.0312 4.5515 12 6 4.0841 -6.2475 4.8271 13 6 3.7691 -6.8355 6.2146 14 1 3.1903 -7.7584 6.1766 15 6 4.9906 -6.9377 7.1302 16 7 5.6695 -8.2149 6.8978 17 6 6.9736 -8.3720 6.5729 18 6 7.1748 -9.7052 6.4542 19 7 5.9991 -10.2908 6.7084 20 7 5.1293 -9.3807 6.9729 21 6 2.9141 -5.5821 6.4658 22 6 2.9499 -1.4034 3.4036 23 16 2.8373 0.0529 2.5254 24 1 -0.3934 0.4417 -0.7651 25 1 1.7923 -0.5137 -0.8900 26 1 1.5613 2.4679 1.2085 27 1 3.5345 1.7704 -0.0321 28 1 1.2098 -2.6672 0.8293 29 1 3.2839 -3.4237 4.9463 30 1 4.0933 -6.9899 4.0291 31 1 4.9619 -5.6014 4.8158 32 1 5.6756 -6.1176 6.9149 33 1 4.6708 -6.8803 8.1706 34 1 7.7067 -7.5907 6.4366 35 1 8.1019 -10.1991 6.2035 36 1 3.4715 -4.7538 6.9033 37 1 1.9802 -5.7882 6.9887 38 1 3.4478 -1.5080 4.3563 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14928172_6894386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:19 Heat of formation + Delta-G solvation = 100.497387 kcal Electronic energy + Delta-G solvation = -23331.274118 eV Core-core repulsion = 19691.635673 eV Total energy + Delta-G solvation = -3639.638445 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.093 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.15134 -41.43889 -39.96384 -38.60802 -37.18897 -35.85097 -34.38675 -31.97961 -31.91773 -29.64380 -27.03792 -27.02479 -26.23120 -24.27460 -23.57339 -22.41819 -21.84515 -21.06615 -20.30085 -18.96778 -18.61698 -18.43650 -18.18024 -17.59973 -16.80457 -16.64974 -16.23923 -16.05778 -15.85373 -15.66859 -15.12652 -15.01223 -14.81857 -14.37459 -13.98772 -13.91722 -13.85939 -13.76656 -13.72943 -13.15595 -12.76075 -12.69193 -12.47060 -12.34285 -12.16567 -12.10294 -11.81536 -11.76096 -11.03082 -10.89892 -10.53733 -10.30853 -10.21400 -10.04156 -9.58136 -5.35257 -0.44525 0.29553 0.64605 0.66489 0.83964 1.08120 1.32745 1.46716 1.70465 1.77186 2.00423 2.27565 3.05570 3.14129 3.20897 3.29605 3.48967 3.55324 3.57564 3.72515 3.74978 3.82307 3.92587 4.05378 4.13568 4.19223 4.28348 4.31292 4.33281 4.48081 4.53070 4.63733 4.66870 4.78092 4.80142 4.95278 5.03800 5.14885 5.24879 5.37212 5.60008 6.34442 6.47483 7.12559 7.60693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.035 4.035 3 Si 0.671 3.329 4 C -0.197 4.197 5 C -0.049 4.049 6 C -0.155 4.155 7 C 0.581 3.419 8 O -0.528 6.528 9 N -0.717 5.717 10 C 0.128 3.872 11 H 0.121 0.879 12 C -0.149 4.149 13 C -0.124 4.124 14 H 0.115 0.885 15 C 0.127 3.873 16 N -0.289 5.289 17 C -0.052 4.052 18 C -0.051 4.051 19 N -0.271 5.271 20 N -0.083 5.083 21 C -0.134 4.134 22 C -0.204 4.204 23 S 0.177 5.823 24 H 0.385 0.615 25 H 0.085 0.915 26 H -0.234 1.234 27 H -0.239 1.239 28 H 0.159 0.841 29 H 0.399 0.601 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.189 0.811 35 H 0.190 0.810 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 8.892 -0.536 9.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.148 4.148 3 Si 0.570 3.430 4 C -0.313 4.313 5 C -0.078 4.078 6 C -0.173 4.173 7 C 0.367 3.633 8 O -0.405 6.405 9 N -0.368 5.368 10 C 0.023 3.977 11 H 0.139 0.861 12 C -0.187 4.187 13 C -0.143 4.143 14 H 0.133 0.867 15 C 0.006 3.994 16 N -0.083 5.083 17 C -0.203 4.203 18 C -0.208 4.208 19 N -0.137 5.137 20 N -0.064 5.064 21 C -0.173 4.173 22 C -0.342 4.342 23 S 0.443 5.557 24 H 0.234 0.766 25 H 0.103 0.897 26 H -0.157 1.157 27 H -0.162 1.162 28 H 0.176 0.824 29 H 0.234 0.766 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.206 0.794 35 H 0.207 0.793 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.773 9.268 0.524 9.688 hybrid contribution 0.921 -0.905 0.049 1.292 sum 3.694 8.363 0.573 9.161 Atomic orbital electron populations 1.86524 1.16725 1.81864 1.49819 1.23999 0.85979 1.09695 0.95149 0.94658 0.81862 0.78118 0.88372 1.23431 1.09191 0.97265 1.01400 1.21052 0.97334 0.94404 0.95038 1.20232 1.05645 0.94051 0.97397 1.17619 0.78031 0.86901 0.80798 1.90832 1.42714 1.49572 1.57334 1.45794 1.57782 1.11437 1.21827 1.22453 0.99196 0.82464 0.93601 0.86131 1.23639 0.98388 0.99765 0.96943 1.22774 0.95949 1.00124 0.95497 0.86702 1.22172 0.94816 0.80349 1.02080 1.47496 1.08031 1.08339 1.44427 1.23711 0.87579 1.00230 1.08746 1.23687 0.98976 0.91378 1.06785 1.75169 0.99436 1.24026 1.15053 1.78307 1.22182 0.86421 1.19445 1.23360 1.00953 0.97040 0.95956 1.25786 1.05109 0.98374 1.04889 1.83200 1.51174 1.10054 1.11266 0.76646 0.89694 1.15704 1.16231 0.82389 0.76584 0.90419 0.89390 0.87496 0.87812 0.79352 0.79302 0.88976 0.89432 0.81100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.12 12.85 -35.23 -0.45 -0.33 16 2 C -0.04 0.02 2.93 36.00 0.11 0.13 16 3 Si 0.67 -1.38 30.92 -169.99 -5.26 -6.63 16 4 C -0.20 -0.31 5.69 -36.18 -0.21 -0.51 16 5 C -0.05 -0.13 9.95 -39.02 -0.39 -0.52 16 6 C -0.15 -0.28 5.98 -104.63 -0.63 -0.90 16 7 C 0.58 1.56 7.79 -12.63 -0.10 1.47 16 8 O -0.53 -3.56 16.41 5.25 0.09 -3.47 16 9 N -0.72 0.78 5.33 -54.16 -0.29 0.49 16 10 C 0.13 -0.17 4.21 -67.11 -0.28 -0.45 16 11 H 0.12 0.12 7.50 -51.93 -0.39 -0.27 16 12 C -0.15 0.28 7.45 -25.83 -0.19 0.09 16 13 C -0.12 0.34 3.84 -89.72 -0.34 -0.01 16 14 H 0.11 -0.08 7.91 -51.93 -0.41 -0.49 16 15 C 0.13 -0.44 6.29 -4.05 -0.03 -0.47 16 16 N -0.29 -0.11 3.44 -61.26 -0.21 -0.32 16 17 C -0.05 0.04 11.57 -17.05 -0.20 -0.16 16 18 C -0.05 -0.08 12.05 -17.73 -0.21 -0.29 16 19 N -0.27 -1.43 12.41 30.24 0.38 -1.06 16 20 N -0.08 -0.36 12.77 60.35 0.77 0.41 16 21 C -0.13 0.54 7.39 -25.91 -0.19 0.34 16 22 C -0.20 0.14 10.38 29.93 0.31 0.45 16 23 S 0.18 0.05 20.20 -107.50 -2.17 -2.12 16 24 H 0.39 -2.09 8.74 45.56 0.40 -1.69 16 25 H 0.09 -0.20 7.96 -51.93 -0.41 -0.61 16 26 H -0.23 -0.16 7.11 56.52 0.40 0.24 16 27 H -0.24 0.02 7.11 56.52 0.40 0.42 16 28 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 29 H 0.40 -1.64 7.21 -40.82 -0.29 -1.93 16 30 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 31 H 0.09 -0.28 7.90 -51.93 -0.41 -0.69 16 32 H 0.11 -0.66 7.78 -51.93 -0.40 -1.07 16 33 H 0.10 -0.45 8.14 -51.93 -0.42 -0.87 16 34 H 0.19 -0.90 8.06 -52.49 -0.42 -1.32 16 35 H 0.19 -0.28 8.06 -52.49 -0.42 -0.70 16 36 H 0.09 -0.55 8.07 -51.93 -0.42 -0.97 16 37 H 0.09 -0.33 8.14 -51.93 -0.42 -0.75 16 38 H 0.17 -0.72 7.01 -52.49 -0.37 -1.09 16 LS Contribution 342.76 15.07 5.17 5.17 Total: 0.00 -12.03 342.76 -8.78 -20.80 By element: Atomic # 1 Polarization: -7.67 SS G_CDS: -4.45 Total: -12.11 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -2.35 Total: -0.83 kcal Atomic # 7 Polarization: -1.12 SS G_CDS: 0.65 Total: -0.47 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.37 Total: -3.80 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: -5.26 Total: -6.63 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.17 Total: -2.12 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -12.03 -8.78 -20.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_6894386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.302 kcal (2) G-P(sol) polarization free energy of solvation -12.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds